Wall clock time and date at job start Tue Mar 31 2020 18:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35316 * 126.12452 * 2 1 4 4 C 1.39871 * 107.92161 * 180.02562 * 3 2 1 5 5 C 1.50696 * 125.89935 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47168 * 124.99432 * 5 4 3 7 7 H 1.09001 * 109.47761 * 304.99901 * 6 5 4 8 8 C 1.53005 * 109.47155 * 184.99545 * 6 5 4 9 9 N 1.46499 * 109.47057 * 65.00138 * 6 5 4 10 10 C 1.34780 * 120.00143 * 205.27286 * 9 6 5 11 11 O 1.21355 * 119.99856 * 359.72963 * 10 9 6 12 12 C 1.49450 * 120.00256 * 179.71970 * 10 9 6 13 13 O 1.21348 * 119.99963 * 355.01354 * 12 10 9 14 14 N 1.34780 * 120.00248 * 175.01265 * 12 10 9 15 15 C 1.46494 * 119.99993 * 185.78229 * 14 12 10 16 16 C 1.53007 * 109.46646 * 183.69231 * 15 14 12 17 17 C 1.50696 * 115.54990 * 306.41252 * 16 15 14 18 18 H 1.08004 * 119.99691 * 145.11428 * 17 16 15 19 19 C 1.37876 * 120.00283 * 325.11005 * 17 16 15 20 20 N 1.31515 * 120.00013 * 349.45035 * 19 17 16 21 21 Si 1.86800 * 119.99971 * 169.44243 * 19 17 16 22 22 H 1.48503 * 109.47037 * 60.00606 * 21 19 17 23 23 H 1.48507 * 109.46978 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47245 * 300.00399 * 21 19 17 25 25 C 1.52999 * 117.49497 * 160.74270 * 16 15 14 26 26 C 1.53000 * 117.49868 * 92.08599 * 16 15 14 27 27 N 1.30837 * 108.20073 * 0.25775 * 4 3 2 28 28 N 1.34945 * 126.13097 * 180.02562 * 2 1 3 29 29 H 0.97000 * 126.03489 * 359.96637 * 28 2 1 30 30 H 1.08998 * 109.46678 * 90.00744 * 1 2 3 31 31 H 1.09000 * 109.46933 * 210.00393 * 1 2 3 32 32 H 1.08992 * 109.47534 * 330.00848 * 1 2 3 33 33 H 1.08005 * 126.04279 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.47486 * 4.99416 * 5 4 3 35 35 H 1.09003 * 109.47268 * 244.99190 * 5 4 3 36 36 H 1.09004 * 109.46780 * 60.00404 * 8 6 5 37 37 H 1.09004 * 109.47061 * 179.97438 * 8 6 5 38 38 H 1.08997 * 109.47097 * 300.00248 * 8 6 5 39 39 H 0.97001 * 120.00613 * 24.99904 * 9 6 5 40 40 H 0.97003 * 119.99691 * 5.77764 * 14 12 10 41 41 H 1.08998 * 109.47356 * 303.68657 * 15 14 12 42 42 H 1.08998 * 109.47666 * 63.69313 * 15 14 12 43 43 H 0.96999 * 120.00277 * 185.02930 * 20 19 17 44 44 H 1.09007 * 117.50384 * 0.02562 * 25 16 15 45 45 H 1.09005 * 117.49499 * 145.01642 * 25 16 15 46 46 H 1.08998 * 117.49759 * 214.97404 * 26 16 15 47 47 H 1.09003 * 117.49977 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6561 -0.0006 5 6 4.8542 1.5397 -0.0013 6 6 5.7530 1.1688 1.1800 7 1 5.1784 1.2223 2.1047 8 6 6.9285 2.1454 1.2527 9 7 6.2605 -0.1935 0.9986 10 6 6.6270 -0.9244 2.0700 11 8 6.5412 -0.4522 3.1847 12 6 7.1388 -2.3163 1.8855 13 8 7.1397 -2.8211 0.7820 14 7 7.5994 -3.0110 2.9446 15 6 8.2173 -4.3244 2.7466 16 6 8.5668 -4.9337 4.1059 17 6 9.4063 -4.0679 5.0097 18 1 9.2528 -4.0949 6.0784 19 6 10.3703 -3.2416 4.4723 20 7 10.7023 -3.3560 3.2049 21 14 11.2046 -1.9593 5.5443 22 1 11.8973 -2.6321 6.6725 23 1 12.1945 -1.2050 4.7341 24 1 10.1848 -1.0211 6.0783 25 6 8.7941 -6.4455 4.1649 26 6 7.5231 -5.8384 4.7640 27 7 3.6334 -0.6523 -0.0065 28 7 2.3027 -1.0899 -0.0005 29 1 2.0056 -2.0133 -0.0004 30 1 -0.3632 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5136 33 1 1.9740 2.1212 0.0004 34 1 4.5484 2.5820 0.0881 35 1 5.4028 1.4006 -0.9329 36 1 6.5509 3.1590 1.3877 37 1 7.5686 1.8814 2.0946 38 1 7.5032 2.0918 0.3281 39 1 6.3290 -0.5710 0.1076 40 1 7.5219 -2.6412 3.8380 41 1 7.5199 -4.9789 2.2237 42 1 9.1253 -4.2133 2.1540 43 1 11.4303 -2.8260 2.8445 44 1 8.6951 -7.0061 3.2353 45 1 9.5507 -6.8140 4.8578 46 1 7.4439 -5.8077 5.8507 47 1 6.5873 -5.9992 4.2288 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117688125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:12 Heat of formation + Delta-G solvation = -5.200528 kcal Electronic energy + Delta-G solvation = -29032.470166 eV Core-core repulsion = 25023.509582 eV Total energy + Delta-G solvation = -4008.960584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.20545 -41.51671 -39.72576 -38.45029 -37.42431 -34.95542 -34.17550 -33.81151 -32.63839 -31.62607 -28.50497 -28.20624 -27.76258 -27.50006 -25.17409 -23.00081 -22.45559 -21.47613 -21.26385 -21.15475 -20.68850 -19.43359 -18.23711 -18.06822 -17.87487 -16.96337 -16.71620 -16.57085 -16.20008 -15.83256 -15.56315 -15.27308 -15.11809 -14.77650 -14.60776 -14.38250 -14.14726 -14.05674 -13.64921 -13.52693 -13.44782 -13.33394 -13.21574 -12.94231 -12.88585 -12.73591 -12.66584 -12.44789 -12.33526 -12.08284 -12.08003 -11.46361 -11.41498 -11.11346 -10.71041 -10.55176 -10.29276 -10.16643 -10.15094 -9.82875 -9.49472 -8.07379 -6.21642 0.50286 0.98256 1.39262 1.44794 1.49189 1.53970 1.83415 2.01802 2.30209 2.38786 2.80661 3.05196 3.56017 3.63195 3.69172 3.76306 3.95167 4.16147 4.19660 4.26838 4.37056 4.47239 4.58336 4.68239 4.73446 4.73798 4.75647 4.80600 4.86381 4.90948 4.93805 5.03192 5.05161 5.10991 5.24234 5.26358 5.32445 5.40974 5.46198 5.55124 5.57913 5.75720 5.86807 6.12035 6.33273 6.46276 6.56327 6.79058 6.80088 6.90825 7.14138 7.41140 8.87801 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014071 B = 0.003162 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.360279 B = 8853.105571 C =10112.253897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.084 3.916 3 C -0.284 4.284 4 C 0.061 3.939 5 C -0.039 4.039 6 C 0.143 3.857 7 H 0.072 0.928 8 C -0.159 4.159 9 N -0.672 5.672 10 C 0.513 3.487 11 O -0.553 6.553 12 C 0.490 3.510 13 O -0.562 6.562 14 N -0.657 5.657 15 C 0.172 3.828 16 C 0.006 3.994 17 C -0.511 4.511 18 H 0.058 0.942 19 C 0.039 3.961 20 N -0.892 5.892 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.189 4.189 26 C -0.189 4.189 27 N -0.326 5.326 28 N -0.482 5.482 29 H 0.442 0.558 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.170 0.830 34 H 0.138 0.862 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.034 0.966 38 H 0.072 0.928 39 H 0.414 0.586 40 H 0.408 0.592 41 H 0.035 0.965 42 H 0.084 0.916 43 H 0.261 0.739 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.832 12.354 -9.046 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.045 4.045 3 C -0.313 4.313 4 C -0.106 4.106 5 C -0.078 4.078 6 C 0.039 3.961 7 H 0.090 0.910 8 C -0.217 4.217 9 N -0.324 5.324 10 C 0.294 3.706 11 O -0.431 6.431 12 C 0.271 3.729 13 O -0.443 6.443 14 N -0.305 5.305 15 C 0.049 3.951 16 C 0.005 3.995 17 C -0.548 4.548 18 H 0.076 0.924 19 C -0.163 4.163 20 N -0.529 5.529 21 Si 0.767 3.233 22 H -0.195 1.195 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.227 4.227 26 C -0.227 4.227 27 N -0.149 5.149 28 N -0.191 5.191 29 H 0.286 0.714 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.188 0.812 34 H 0.156 0.844 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.251 0.749 40 H 0.244 0.756 41 H 0.053 0.947 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.066 11.438 -9.196 23.277 hybrid contribution 0.237 0.234 0.667 0.746 sum -17.829 11.673 -8.529 22.954 Atomic orbital electron populations 1.20581 0.84502 1.05085 1.04580 1.21804 0.96313 0.87174 0.99182 1.21494 0.90924 1.00476 1.18414 1.22643 0.96973 0.91599 0.99375 1.20507 0.89796 0.99363 0.98139 1.21195 0.95328 0.79828 0.99718 0.90960 1.22170 0.97422 0.99889 1.02254 1.45761 1.62197 1.15268 1.09160 1.20070 0.78702 0.86388 0.85457 1.90702 1.54733 1.72599 1.25116 1.20342 0.80100 0.87355 0.85126 1.90646 1.57338 1.71041 1.25245 1.45664 1.55519 1.19682 1.09634 1.20891 0.96013 0.80866 0.97371 1.19213 0.97526 0.89357 0.93407 1.20668 1.18754 1.22748 0.92619 0.92427 1.25512 0.96997 0.97967 0.95804 1.69950 1.28101 1.40879 1.13933 0.85862 0.78336 0.79888 0.79177 1.19486 1.21255 1.19981 1.22929 0.99396 0.98900 1.01493 1.22973 0.92674 1.07484 0.99526 1.77396 0.97711 1.13726 1.26087 1.46454 1.03812 1.09149 1.59702 0.71359 0.88716 0.90266 0.88159 0.81246 0.84413 0.88208 0.87996 0.94703 0.90906 0.74928 0.75582 0.94678 0.89834 0.92965 0.90209 0.90339 0.89823 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 10.43 71.24 0.74 0.05 16 2 C 0.08 1.41 7.21 41.41 0.30 1.71 16 3 C -0.28 -5.07 10.64 21.99 0.23 -4.84 16 4 C 0.06 1.35 6.46 43.10 0.28 1.62 16 5 C -0.04 -0.65 5.34 29.85 0.16 -0.49 16 6 C 0.14 3.41 2.57 44.99 0.12 3.52 16 7 H 0.07 2.02 7.57 -2.39 -0.02 2.00 16 8 C -0.16 -3.26 9.49 71.98 0.68 -2.58 16 9 N -0.67 -21.15 4.11 -443.85 -1.82 -22.97 16 10 C 0.51 20.72 7.85 87.27 0.69 21.41 16 11 O -0.55 -24.43 16.15 -3.26 -0.05 -24.48 16 12 C 0.49 22.33 7.88 87.27 0.69 23.02 16 13 O -0.56 -26.97 16.48 -3.24 -0.05 -27.03 16 14 N -0.66 -31.27 5.27 -464.41 -2.45 -33.72 16 15 C 0.17 8.46 4.75 86.38 0.41 8.87 16 16 C 0.01 0.27 2.00 -52.93 -0.11 0.17 16 17 C -0.51 -26.99 8.27 25.60 0.21 -26.78 16 18 H 0.06 3.03 7.84 -2.91 -0.02 3.01 16 19 C 0.04 2.10 5.13 84.65 0.43 2.53 16 20 N -0.89 -49.47 10.75 21.45 0.23 -49.24 16 21 Si 0.94 43.35 29.55 68.60 2.03 45.37 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 25 C -0.19 -8.24 9.96 30.62 0.30 -7.94 16 26 C -0.19 -7.89 9.92 30.62 0.30 -7.58 16 27 N -0.33 -8.98 11.74 -47.39 -0.56 -9.54 16 28 N -0.48 -10.38 7.36 -48.00 -0.35 -10.74 16 29 H 0.44 7.66 8.96 -213.33 -1.91 5.75 16 30 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.14 1.27 8.12 -2.39 -0.02 1.25 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.03 0.94 8.14 -2.38 -0.02 0.93 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.41 12.82 7.99 -92.71 -0.74 12.08 16 40 H 0.41 19.89 7.41 -92.71 -0.69 19.21 16 41 H 0.04 1.67 8.06 -2.39 -0.02 1.65 16 42 H 0.08 4.65 6.04 -2.39 -0.01 4.63 16 43 H 0.26 14.12 8.32 -92.71 -0.77 13.35 16 44 H 0.08 3.25 8.14 -2.38 -0.02 3.23 16 45 H 0.08 3.44 8.14 -2.38 -0.02 3.42 16 46 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 47 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -70.85 398.54 0.09 -70.75 By element: Atomic # 1 Polarization: 51.22 SS G_CDS: -2.32 Total: 48.90 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 5.44 Total: 12.69 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -4.95 Total: -126.21 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -0.11 Total: -51.51 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -70.85 0.09 -70.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117688125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.552 kcal (2) G-P(sol) polarization free energy of solvation -70.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds