Wall clock time and date at job start Tue Mar 31 2020 18:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35308 * 126.13198 * 2 1 4 4 C 1.39865 * 107.92579 * 180.14932 * 3 2 1 5 5 C 1.50700 * 125.90414 * 179.86719 * 4 3 2 6 6 C 1.52997 * 109.47484 * 124.71648 * 5 4 3 7 7 H 1.09001 * 109.46950 * 54.99732 * 6 5 4 8 8 C 1.52994 * 109.47210 * 175.00047 * 6 5 4 9 9 N 1.46505 * 109.47070 * 295.00126 * 6 5 4 10 10 C 1.34768 * 120.00082 * 154.99718 * 9 6 5 11 11 O 1.21345 * 120.00101 * 0.02562 * 10 9 6 12 12 C 1.49453 * 120.00060 * 179.97438 * 10 9 6 13 13 O 1.21347 * 119.99738 * 5.09600 * 12 10 9 14 14 N 1.34782 * 120.00141 * 185.08842 * 12 10 9 15 15 C 1.46497 * 119.99894 * 185.03768 * 14 12 10 16 16 C 1.53005 * 109.46780 * 184.77988 * 15 14 12 17 17 C 1.50694 * 115.55017 * 294.81935 * 16 15 14 18 18 H 1.08003 * 119.99667 * 95.20821 * 17 16 15 19 19 C 1.37878 * 120.00569 * 274.92361 * 17 16 15 20 20 N 1.31513 * 119.99163 * 355.42361 * 19 17 16 21 21 Si 1.86794 * 120.00501 * 175.42139 * 19 17 16 22 22 H 1.48506 * 109.47138 * 59.99993 * 21 19 17 23 23 H 1.48497 * 109.47408 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47174 * 300.00591 * 21 19 17 25 25 C 1.53002 * 117.49623 * 80.49302 * 16 15 14 26 26 C 1.53002 * 117.49534 * 149.14978 * 16 15 14 27 27 N 1.30838 * 108.19973 * 359.60260 * 4 3 2 28 28 N 1.34952 * 126.12297 * 179.71255 * 2 1 3 29 29 H 0.97001 * 126.03835 * 359.97438 * 28 2 1 30 30 H 1.09006 * 109.46534 * 270.26228 * 1 2 3 31 31 H 1.08995 * 109.47410 * 30.25837 * 1 2 3 32 32 H 1.09001 * 109.47475 * 150.26444 * 1 2 3 33 33 H 1.08009 * 126.03912 * 0.03507 * 3 2 1 34 34 H 1.08997 * 109.46905 * 4.71323 * 5 4 3 35 35 H 1.09003 * 109.46985 * 244.72132 * 5 4 3 36 36 H 1.08998 * 109.47313 * 179.97438 * 8 6 5 37 37 H 1.08998 * 109.47527 * 299.99898 * 8 6 5 38 38 H 1.09009 * 109.47215 * 60.00285 * 8 6 5 39 39 H 0.97003 * 120.00007 * 335.00249 * 9 6 5 40 40 H 0.97004 * 119.99403 * 5.04265 * 14 12 10 41 41 H 1.09003 * 109.46616 * 64.78885 * 15 14 12 42 42 H 1.08993 * 109.47729 * 304.78355 * 15 14 12 43 43 H 0.97009 * 119.99393 * 184.99658 * 20 19 17 44 44 H 1.08995 * 117.49715 * 214.99983 * 25 16 15 45 45 H 1.09003 * 117.49834 * 0.02562 * 25 16 15 46 46 H 1.09005 * 117.49794 * 359.97438 * 26 16 15 47 47 H 1.08999 * 117.49412 * 144.97246 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0928 0.0000 4 6 3.6335 0.6558 -0.0035 5 6 4.8544 1.5393 -0.0075 6 6 5.7525 1.1736 1.1758 7 1 5.9859 0.1095 1.1396 8 6 7.0488 1.9829 1.1015 9 7 5.0576 1.4786 2.4290 10 6 5.3827 0.8182 3.5579 11 8 6.2514 -0.0288 3.5365 12 6 4.6741 1.1298 4.8363 13 8 3.7443 1.9095 4.8402 14 7 5.0677 0.5446 5.9849 15 6 4.3060 0.7635 7.2170 16 6 5.0254 0.0906 8.3877 17 6 5.1069 -1.4128 8.3230 18 1 5.9857 -1.8888 7.9137 19 6 4.0620 -2.1807 8.7915 20 7 3.0342 -1.6055 9.3766 21 14 4.1062 -4.0378 8.5953 22 1 5.2952 -4.5818 9.2996 23 1 2.8734 -4.6266 9.1771 24 1 4.1853 -4.3814 7.1528 25 6 6.2060 0.8358 9.0138 26 6 4.8788 0.7314 9.7693 27 7 3.6334 -0.6525 0.0031 28 7 2.3026 -1.0901 0.0055 29 1 2.0054 -2.0134 0.0105 30 1 -0.3632 0.0047 1.0277 31 1 -0.3634 0.8876 -0.5178 32 1 -0.3634 -0.8923 -0.5097 33 1 1.9741 2.1211 0.0005 34 1 4.5485 2.5820 0.0771 35 1 5.4033 1.3961 -0.9383 36 1 7.6885 1.7227 1.9448 37 1 7.5659 1.7560 0.1692 38 1 6.8153 3.0470 1.1378 39 1 4.3633 2.1559 2.4461 40 1 5.8554 -0.0215 5.9957 41 1 3.3093 0.3356 7.1088 42 1 4.2233 1.8334 7.4079 43 1 2.3338 -2.1490 9.7706 44 1 7.0415 0.2387 9.3788 45 1 6.4698 1.8056 8.5919 46 1 4.2701 1.6325 9.8441 47 1 4.8408 0.0654 10.6314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117688126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:17 Heat of formation + Delta-G solvation = 12.508400 kcal Electronic energy + Delta-G solvation = -28684.148007 eV Core-core repulsion = 24675.955340 eV Total energy + Delta-G solvation = -4008.192667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.42925 -40.19762 -38.31172 -36.68631 -36.35564 -33.55220 -32.96079 -31.96123 -31.75736 -30.78664 -27.49313 -27.11597 -27.03593 -25.45702 -23.81719 -21.59852 -21.12787 -20.61065 -20.05171 -19.76432 -19.44199 -17.91462 -17.53142 -16.58110 -16.12110 -15.54306 -15.34771 -15.17699 -14.76156 -14.62874 -14.34637 -14.05321 -13.98918 -13.67044 -13.47701 -13.35667 -13.18866 -12.89699 -12.71799 -12.65961 -12.41632 -12.32899 -11.86554 -11.72996 -11.60914 -11.27527 -11.15687 -10.96916 -10.94393 -10.59599 -10.53660 -10.23646 -9.60304 -9.46684 -9.16799 -9.09093 -9.06648 -8.74647 -8.50973 -8.36000 -8.16062 -6.07835 -4.17208 1.72121 1.88522 2.59416 2.69382 2.78527 3.29048 3.33522 3.37571 3.68701 4.11366 4.31058 4.36837 4.46593 4.65414 4.81376 4.95477 5.00943 5.12778 5.18849 5.19905 5.29186 5.36467 5.43967 5.51236 5.55541 5.57234 5.61048 5.89074 5.96359 5.98025 6.10281 6.30310 6.41882 6.43128 6.48384 6.49764 6.68848 6.77327 7.04575 7.09706 7.13116 7.31503 7.36956 7.52013 7.55137 7.82156 7.95465 8.23509 8.33143 8.58189 8.84741 9.50262 10.99230 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.003147 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.301249 B = 8894.244165 C =10054.330341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.087 3.913 3 C -0.269 4.269 4 C 0.078 3.922 5 C -0.047 4.047 6 C 0.145 3.855 7 H 0.098 0.902 8 C -0.164 4.164 9 N -0.699 5.699 10 C 0.510 3.490 11 O -0.519 6.519 12 C 0.495 3.505 13 O -0.542 6.542 14 N -0.668 5.668 15 C 0.160 3.840 16 C 0.022 3.978 17 C -0.501 4.501 18 H 0.061 0.939 19 C 0.074 3.926 20 N -0.876 5.876 21 Si 0.890 3.110 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.210 4.210 26 C -0.139 4.139 27 N -0.285 5.285 28 N -0.474 5.474 29 H 0.437 0.563 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.147 0.853 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.410 0.590 40 H 0.413 0.587 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.262 0.738 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.472 7.465 -20.205 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.298 4.298 4 C -0.089 4.089 5 C -0.086 4.086 6 C 0.040 3.960 7 H 0.116 0.884 8 C -0.222 4.222 9 N -0.353 5.353 10 C 0.291 3.709 11 O -0.394 6.394 12 C 0.274 3.726 13 O -0.421 6.421 14 N -0.317 5.317 15 C 0.037 3.963 16 C 0.021 3.979 17 C -0.538 4.538 18 H 0.079 0.921 19 C -0.130 4.130 20 N -0.512 5.512 21 Si 0.718 3.282 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.247 4.247 26 C -0.178 4.178 27 N -0.108 5.108 28 N -0.183 5.183 29 H 0.280 0.720 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.165 0.835 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.246 0.754 40 H 0.249 0.751 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.018 6.301 -20.149 21.136 hybrid contribution -0.846 -0.836 0.072 1.191 sum -1.864 5.465 -20.078 20.891 Atomic orbital electron populations 1.20477 0.87275 1.03755 1.03782 1.21133 0.94661 0.87806 1.00529 1.21129 0.91556 0.99183 1.17911 1.22114 0.95441 0.91734 0.99582 1.20385 0.91472 0.97746 0.99005 1.21021 0.91313 1.01812 0.81896 0.88414 1.22195 0.96932 1.00202 1.02919 1.45775 1.40535 1.41194 1.07759 1.20428 0.83309 0.81746 0.85442 1.90746 1.31029 1.31686 1.85891 1.19999 0.84885 0.82555 0.85143 1.90698 1.29690 1.35199 1.86476 1.45885 1.30658 1.47324 1.07845 1.21190 0.95402 0.97641 0.82028 1.19017 0.95337 0.93733 0.89815 1.20355 1.02575 0.88284 1.42605 0.92068 1.24973 0.95009 0.98418 0.94592 1.69984 1.10094 1.35344 1.35800 0.86689 0.77372 0.85510 0.78666 1.20146 1.21271 1.20099 1.23033 0.93087 1.00415 1.08170 1.22473 0.97098 1.00522 0.97659 1.77303 0.96262 1.12466 1.24741 1.46292 1.04042 1.08280 1.59667 0.71950 0.89825 0.89534 0.91184 0.83546 0.89085 0.88369 0.91556 0.91301 0.92106 0.75425 0.75059 0.90958 0.93446 0.92837 0.90224 0.91635 0.91750 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.43 36.01 0.38 -0.23 16 2 C 0.09 0.87 7.21 -82.26 -0.59 0.28 16 3 C -0.27 -2.83 10.63 -40.02 -0.43 -3.25 16 4 C 0.08 0.90 6.22 -82.41 -0.51 0.39 16 5 C -0.05 -0.41 5.34 -27.88 -0.15 -0.55 16 6 C 0.14 1.62 2.55 -67.93 -0.17 1.44 16 7 H 0.10 1.36 7.52 -51.93 -0.39 0.97 16 8 C -0.16 -1.52 9.48 37.15 0.35 -1.17 16 9 N -0.70 -9.44 4.78 -54.24 -0.26 -9.70 16 10 C 0.51 8.89 7.85 -11.59 -0.09 8.80 16 11 O -0.52 -10.12 16.16 5.50 0.09 -10.03 16 12 C 0.49 9.71 7.88 -11.58 -0.09 9.62 16 13 O -0.54 -11.33 16.47 5.50 0.09 -11.24 16 14 N -0.67 -13.88 5.46 -60.73 -0.33 -14.22 16 15 C 0.16 3.64 5.53 -4.04 -0.02 3.62 16 16 C 0.02 0.52 1.47 -155.66 -0.23 0.29 16 17 C -0.50 -13.20 8.59 -34.44 -0.30 -13.50 16 18 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 19 C 0.07 1.99 5.43 -17.82 -0.10 1.90 16 20 N -0.88 -24.32 12.65 55.43 0.70 -23.62 16 21 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C -0.21 -4.44 9.96 -26.69 -0.27 -4.71 16 26 C -0.14 -3.19 9.14 -26.69 -0.24 -3.43 16 27 N -0.28 -3.83 12.61 33.67 0.42 -3.40 16 28 N -0.47 -5.25 7.36 33.48 0.25 -5.01 16 29 H 0.44 3.69 8.96 -182.61 -1.64 2.06 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.09 0.59 8.12 -51.93 -0.42 0.17 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.41 5.09 8.08 -40.82 -0.33 4.76 16 40 H 0.41 8.56 7.84 -40.82 -0.32 8.24 16 41 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 42 H 0.05 1.04 8.05 -51.93 -0.42 0.62 16 43 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 44 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 46 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 LS Contribution 404.55 15.07 6.10 6.10 Total: -1.00 -32.70 404.55 -8.99 -41.69 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -8.56 Total: 13.87 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -2.46 Total: -0.51 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.78 Total: -55.94 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: 0.18 Total: -21.27 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.70 -8.99 -41.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117688126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.195 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds