Wall clock time and date at job start Tue Mar 31 2020 18:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35308 * 126.13198 * 2 1 4 4 C 1.39865 * 107.92579 * 180.14932 * 3 2 1 5 5 C 1.50700 * 125.90414 * 179.86719 * 4 3 2 6 6 C 1.52997 * 109.47484 * 124.71648 * 5 4 3 7 7 H 1.09001 * 109.46950 * 54.99732 * 6 5 4 8 8 C 1.52994 * 109.47210 * 175.00047 * 6 5 4 9 9 N 1.46505 * 109.47070 * 295.00126 * 6 5 4 10 10 C 1.34768 * 120.00082 * 154.99718 * 9 6 5 11 11 O 1.21345 * 120.00101 * 0.02562 * 10 9 6 12 12 C 1.49453 * 120.00060 * 179.97438 * 10 9 6 13 13 O 1.21347 * 119.99738 * 5.09600 * 12 10 9 14 14 N 1.34782 * 120.00141 * 185.08842 * 12 10 9 15 15 C 1.46497 * 119.99894 * 185.03768 * 14 12 10 16 16 C 1.53005 * 109.46780 * 184.77988 * 15 14 12 17 17 C 1.50694 * 115.55017 * 294.81935 * 16 15 14 18 18 H 1.08003 * 119.99667 * 95.20821 * 17 16 15 19 19 C 1.37878 * 120.00569 * 274.92361 * 17 16 15 20 20 N 1.31513 * 119.99163 * 355.42361 * 19 17 16 21 21 Si 1.86794 * 120.00501 * 175.42139 * 19 17 16 22 22 H 1.48506 * 109.47138 * 59.99993 * 21 19 17 23 23 H 1.48497 * 109.47408 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47174 * 300.00591 * 21 19 17 25 25 C 1.53002 * 117.49623 * 80.49302 * 16 15 14 26 26 C 1.53002 * 117.49534 * 149.14978 * 16 15 14 27 27 N 1.30838 * 108.19973 * 359.60260 * 4 3 2 28 28 N 1.34952 * 126.12297 * 179.71255 * 2 1 3 29 29 H 0.97001 * 126.03835 * 359.97438 * 28 2 1 30 30 H 1.09006 * 109.46534 * 270.26228 * 1 2 3 31 31 H 1.08995 * 109.47410 * 30.25837 * 1 2 3 32 32 H 1.09001 * 109.47475 * 150.26444 * 1 2 3 33 33 H 1.08009 * 126.03912 * 0.03507 * 3 2 1 34 34 H 1.08997 * 109.46905 * 4.71323 * 5 4 3 35 35 H 1.09003 * 109.46985 * 244.72132 * 5 4 3 36 36 H 1.08998 * 109.47313 * 179.97438 * 8 6 5 37 37 H 1.08998 * 109.47527 * 299.99898 * 8 6 5 38 38 H 1.09009 * 109.47215 * 60.00285 * 8 6 5 39 39 H 0.97003 * 120.00007 * 335.00249 * 9 6 5 40 40 H 0.97004 * 119.99403 * 5.04265 * 14 12 10 41 41 H 1.09003 * 109.46616 * 64.78885 * 15 14 12 42 42 H 1.08993 * 109.47729 * 304.78355 * 15 14 12 43 43 H 0.97009 * 119.99393 * 184.99658 * 20 19 17 44 44 H 1.08995 * 117.49715 * 214.99983 * 25 16 15 45 45 H 1.09003 * 117.49834 * 0.02562 * 25 16 15 46 46 H 1.09005 * 117.49794 * 359.97438 * 26 16 15 47 47 H 1.08999 * 117.49412 * 144.97246 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0928 0.0000 4 6 3.6335 0.6558 -0.0035 5 6 4.8544 1.5393 -0.0075 6 6 5.7525 1.1736 1.1758 7 1 5.9859 0.1095 1.1396 8 6 7.0488 1.9829 1.1015 9 7 5.0576 1.4786 2.4290 10 6 5.3827 0.8182 3.5579 11 8 6.2514 -0.0288 3.5365 12 6 4.6741 1.1298 4.8363 13 8 3.7443 1.9095 4.8402 14 7 5.0677 0.5446 5.9849 15 6 4.3060 0.7635 7.2170 16 6 5.0254 0.0906 8.3877 17 6 5.1069 -1.4128 8.3230 18 1 5.9857 -1.8888 7.9137 19 6 4.0620 -2.1807 8.7915 20 7 3.0342 -1.6055 9.3766 21 14 4.1062 -4.0378 8.5953 22 1 5.2952 -4.5818 9.2996 23 1 2.8734 -4.6266 9.1771 24 1 4.1853 -4.3814 7.1528 25 6 6.2060 0.8358 9.0138 26 6 4.8788 0.7314 9.7693 27 7 3.6334 -0.6525 0.0031 28 7 2.3026 -1.0901 0.0055 29 1 2.0054 -2.0134 0.0105 30 1 -0.3632 0.0047 1.0277 31 1 -0.3634 0.8876 -0.5178 32 1 -0.3634 -0.8923 -0.5097 33 1 1.9741 2.1211 0.0005 34 1 4.5485 2.5820 0.0771 35 1 5.4033 1.3961 -0.9383 36 1 7.6885 1.7227 1.9448 37 1 7.5659 1.7560 0.1692 38 1 6.8153 3.0470 1.1378 39 1 4.3633 2.1559 2.4461 40 1 5.8554 -0.0215 5.9957 41 1 3.3093 0.3356 7.1088 42 1 4.2233 1.8334 7.4079 43 1 2.3338 -2.1490 9.7706 44 1 7.0415 0.2387 9.3788 45 1 6.4698 1.8056 8.5919 46 1 4.2701 1.6325 9.8441 47 1 4.8408 0.0654 10.6314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117688126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:16 Heat of formation + Delta-G solvation = -10.674574 kcal Electronic energy + Delta-G solvation = -28685.153296 eV Core-core repulsion = 24675.955340 eV Total energy + Delta-G solvation = -4009.197956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.23775 -41.62516 -39.80835 -38.47628 -37.46192 -35.13771 -34.00483 -33.91082 -32.59354 -31.69523 -28.75580 -28.19183 -27.82583 -27.43881 -25.25165 -22.97674 -22.52930 -21.51541 -21.38169 -21.21812 -20.71448 -19.43437 -18.33944 -18.05703 -17.85722 -17.01304 -16.68946 -16.61575 -16.20310 -15.98838 -15.69270 -15.37712 -14.99972 -14.86613 -14.67123 -14.44633 -14.23390 -14.13370 -13.70545 -13.55962 -13.51006 -13.39038 -13.11628 -13.06722 -12.97777 -12.85958 -12.71216 -12.50500 -12.41793 -12.06435 -12.02435 -11.44993 -11.39200 -10.99108 -10.74644 -10.47504 -10.38156 -10.20311 -10.10502 -9.97520 -9.53009 -8.13176 -6.26590 0.39406 0.93616 1.38536 1.39994 1.41295 1.47019 1.80698 1.97988 2.18748 2.38937 2.72844 3.14286 3.43051 3.58491 3.62105 3.71609 3.95774 4.16469 4.18300 4.29807 4.35313 4.49721 4.59352 4.60884 4.66947 4.70111 4.71523 4.83394 4.83883 4.90281 4.91109 5.01127 5.05412 5.08215 5.24578 5.27027 5.31061 5.34111 5.40661 5.51255 5.67437 5.73831 5.74603 6.03493 6.33848 6.42367 6.47047 6.74603 6.78661 6.82398 7.00789 7.42837 8.93312 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.003147 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.301249 B = 8894.244165 C =10054.330341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.084 3.916 3 C -0.287 4.287 4 C 0.069 3.931 5 C -0.040 4.040 6 C 0.143 3.857 7 H 0.068 0.932 8 C -0.158 4.158 9 N -0.678 5.678 10 C 0.512 3.488 11 O -0.545 6.545 12 C 0.495 3.505 13 O -0.554 6.554 14 N -0.671 5.671 15 C 0.176 3.824 16 C -0.003 4.003 17 C -0.510 4.510 18 H 0.055 0.945 19 C 0.031 3.969 20 N -0.902 5.902 21 Si 0.943 3.057 22 H -0.269 1.269 23 H -0.284 1.284 24 H -0.280 1.280 25 C -0.181 4.181 26 C -0.143 4.143 27 N -0.333 5.333 28 N -0.481 5.481 29 H 0.443 0.557 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.167 0.833 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.041 0.959 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.417 0.583 40 H 0.413 0.587 41 H 0.038 0.962 42 H 0.057 0.943 43 H 0.261 0.739 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.302 8.829 -21.870 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 C -0.316 4.316 4 C -0.097 4.097 5 C -0.080 4.080 6 C 0.039 3.961 7 H 0.086 0.914 8 C -0.216 4.216 9 N -0.331 5.331 10 C 0.292 3.708 11 O -0.422 6.422 12 C 0.275 3.725 13 O -0.434 6.434 14 N -0.321 5.321 15 C 0.052 3.948 16 C -0.004 4.004 17 C -0.548 4.548 18 H 0.074 0.926 19 C -0.171 4.171 20 N -0.539 5.539 21 Si 0.770 3.230 22 H -0.194 1.194 23 H -0.210 1.210 24 H -0.206 1.206 25 C -0.218 4.218 26 C -0.182 4.182 27 N -0.156 5.156 28 N -0.191 5.191 29 H 0.288 0.712 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.185 0.815 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.255 0.745 40 H 0.250 0.750 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.109 0.891 46 H 0.095 0.905 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.847 7.683 -21.849 23.176 hybrid contribution -0.934 -1.230 0.522 1.630 sum -1.781 6.452 -21.327 22.353 Atomic orbital electron populations 1.20589 0.84844 1.05462 1.04107 1.21762 0.96236 0.87388 0.99064 1.21519 0.91316 1.00404 1.18321 1.22614 0.96854 0.91503 0.98724 1.20512 0.90264 0.98703 0.98478 1.21192 0.92778 1.00634 0.81457 0.91400 1.22151 0.95306 1.00953 1.03145 1.45807 1.39963 1.39913 1.07423 1.20018 0.83110 0.82083 0.85549 1.90740 1.32283 1.33092 1.86127 1.20415 0.84606 0.81810 0.85638 1.90680 1.30229 1.35690 1.86808 1.45817 1.30599 1.47784 1.07852 1.20824 0.93756 0.97591 0.82595 1.19044 0.97768 0.92962 0.90587 1.20627 1.02232 0.89988 1.41954 0.92646 1.25597 0.94929 1.01903 0.94637 1.70076 1.10618 1.36417 1.36790 0.85846 0.77560 0.81488 0.78142 1.19396 1.20956 1.20603 1.23023 0.92016 1.00939 1.05834 1.22395 0.98862 1.00488 0.96421 1.77237 0.97787 1.13837 1.26783 1.46390 1.03747 1.09096 1.59862 0.71232 0.89998 0.87733 0.89646 0.81507 0.86148 0.86141 0.93997 0.88889 0.90037 0.74542 0.75040 0.94407 0.92517 0.93012 0.89962 0.89136 0.90536 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 10.43 71.24 0.74 -0.26 16 2 C 0.08 1.58 7.21 41.40 0.30 1.88 16 3 C -0.29 -5.54 10.63 21.99 0.23 -5.31 16 4 C 0.07 1.51 6.22 43.10 0.27 1.78 16 5 C -0.04 -0.60 5.34 29.85 0.16 -0.44 16 6 C 0.14 3.00 2.55 44.99 0.11 3.12 16 7 H 0.07 1.89 7.52 -2.39 -0.02 1.87 16 8 C -0.16 -2.56 9.48 71.98 0.68 -1.88 16 9 N -0.68 -17.56 4.78 -443.88 -2.12 -19.68 16 10 C 0.51 17.77 7.85 87.27 0.69 18.45 16 11 O -0.54 -21.50 16.16 -3.23 -0.05 -21.55 16 12 C 0.49 19.37 7.88 87.27 0.69 20.05 16 13 O -0.55 -22.93 16.47 -3.24 -0.05 -22.98 16 14 N -0.67 -28.02 5.46 -464.41 -2.54 -30.56 16 15 C 0.18 8.03 5.53 86.38 0.48 8.51 16 16 C 0.00 -0.14 1.47 -52.93 -0.08 -0.21 16 17 C -0.51 -27.13 8.59 25.60 0.22 -26.91 16 18 H 0.06 2.94 7.82 -2.91 -0.02 2.92 16 19 C 0.03 1.66 5.43 84.66 0.46 2.12 16 20 N -0.90 -50.81 12.65 21.45 0.27 -50.54 16 21 Si 0.94 43.70 29.54 68.60 2.03 45.72 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 C -0.18 -7.40 9.96 30.62 0.30 -7.09 16 26 C -0.14 -6.52 9.14 30.62 0.28 -6.24 16 27 N -0.33 -8.91 12.61 -47.39 -0.60 -9.51 16 28 N -0.48 -10.57 7.36 -48.00 -0.35 -10.92 16 29 H 0.44 7.60 8.96 -213.33 -1.91 5.68 16 30 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.12 1.10 8.12 -2.39 -0.02 1.08 16 35 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.42 9.63 8.08 -92.71 -0.75 8.88 16 40 H 0.41 17.26 7.84 -92.71 -0.73 16.53 16 41 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.06 2.46 8.05 -2.39 -0.02 2.44 16 43 H 0.26 14.15 8.32 -92.70 -0.77 13.38 16 44 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 45 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 46 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 47 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -71.51 404.55 -0.26 -71.76 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: -2.37 Total: 40.69 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 5.54 Total: 7.56 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -5.34 Total: -121.21 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -0.11 Total: -44.53 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -71.51 -0.26 -71.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117688126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.089 kcal (2) G-P(sol) polarization free energy of solvation -71.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds