Wall clock time and date at job start Tue Mar 31 2020 19:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38221 * 120.41773 * 2 1 4 4 N 1.31862 * 120.76221 * 180.25125 * 3 2 1 5 5 C 1.31881 * 121.72315 * 0.04192 * 4 3 2 6 6 C 1.38185 * 120.76978 * 359.96041 * 5 4 3 7 7 C 1.38635 * 120.41887 * 180.27454 * 2 1 3 8 8 C 1.50701 * 120.78677 * 359.70635 * 7 2 1 9 9 C 1.50692 * 109.47149 * 85.00080 * 8 7 2 10 10 O 1.21287 * 120.00216 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00262 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00559 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47519 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47358 * 180.02562 * 13 12 11 15 15 N 1.46904 * 109.47196 * 180.02562 * 14 13 12 16 16 C 1.46890 * 110.99858 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.47095 * 180.02562 * 16 15 14 18 18 O 1.21286 * 119.99874 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99930 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00013 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00018 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00284 * 180.02562 * 20 19 17 23 23 N 1.31408 * 119.99664 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99963 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47538 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47536 * 119.99763 * 24 22 20 27 27 H 1.48498 * 109.46940 * 239.99477 * 24 22 20 28 28 H 1.08999 * 109.47245 * 269.72372 * 1 2 3 29 29 H 1.08991 * 109.46674 * 29.72400 * 1 2 3 30 30 H 1.09007 * 109.46846 * 149.72305 * 1 2 3 31 31 H 1.07993 * 119.62150 * 0.27487 * 3 2 1 32 32 H 1.08011 * 119.61586 * 179.97438 * 5 4 3 33 33 H 1.07998 * 120.41936 * 180.02562 * 6 5 4 34 34 H 1.09005 * 109.46822 * 205.00093 * 8 7 2 35 35 H 1.08995 * 109.47233 * 324.99475 * 8 7 2 36 36 H 0.97008 * 119.99915 * 0.02562 * 11 9 8 37 37 H 1.08992 * 109.47168 * 300.00180 * 12 11 9 38 38 H 1.09007 * 109.46777 * 60.00305 * 12 11 9 39 39 H 1.09005 * 109.47122 * 300.00576 * 13 12 11 40 40 H 1.09002 * 109.47208 * 60.00085 * 13 12 11 41 41 H 1.09001 * 109.46808 * 300.00038 * 14 13 12 42 42 H 1.09001 * 109.46654 * 60.00382 * 14 13 12 43 43 H 1.00896 * 110.99868 * 56.04290 * 15 14 13 44 44 H 1.09006 * 109.47677 * 299.99784 * 16 15 14 45 45 H 1.08997 * 109.47427 * 60.00074 * 16 15 14 46 46 H 0.96999 * 120.00584 * 0.02562 * 19 17 16 47 47 H 0.97008 * 119.99613 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0050 5 6 4.2256 0.0823 -0.0109 6 6 3.5948 -1.1471 -0.0113 7 6 2.2090 -1.1955 -0.0057 8 6 1.4831 -2.5162 -0.0054 9 6 1.1264 -2.8937 -1.4200 10 8 1.4311 -2.1620 -2.3381 11 7 0.4687 -4.0442 -1.6651 12 6 0.1214 -4.4110 -3.0402 13 6 -0.6142 -5.7525 -3.0401 14 6 -0.9764 -6.1358 -4.4763 15 7 -1.6833 -7.4235 -4.4761 16 6 -2.0481 -7.8240 -5.8414 17 6 -2.7703 -9.1461 -5.8011 18 8 -2.9618 -9.7004 -4.7394 19 7 -3.2025 -9.7131 -6.9449 20 6 -3.8590 -10.9160 -6.9083 21 1 -4.0303 -11.4092 -5.9628 22 6 -4.3042 -11.5008 -8.0876 23 7 -4.0962 -10.9005 -9.2379 24 14 -5.1994 -13.1396 -8.0375 25 1 -5.3056 -13.6029 -6.6306 26 1 -6.5601 -12.9781 -8.6100 27 1 -4.4437 -14.1408 -8.8322 28 1 -0.3634 -0.0050 1.0276 29 1 -0.3632 0.8924 -0.5095 30 1 -0.3633 -0.8876 -0.5182 31 1 1.6675 2.1276 0.0045 32 1 5.3047 0.1285 -0.0153 33 1 4.1737 -2.0588 -0.0158 34 1 2.1263 -3.2841 0.4244 35 1 0.5731 -2.4305 0.5883 36 1 0.2247 -4.6293 -0.9308 37 1 -0.5222 -3.6433 -3.4695 38 1 1.0314 -4.4962 -3.6344 39 1 0.0298 -6.5201 -2.6109 40 1 -1.5241 -5.6678 -2.4459 41 1 -1.6203 -5.3683 -4.9058 42 1 -0.0662 -6.2206 -5.0701 43 1 -2.4967 -7.3894 -3.8801 44 1 -2.6993 -7.0680 -6.2802 45 1 -1.1457 -7.9209 -6.4451 46 1 -3.0484 -9.2704 -7.7941 47 1 -4.4073 -11.3086 -10.0611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158111174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:57 Heat of formation + Delta-G solvation = -51.714895 kcal Electronic energy + Delta-G solvation = -26427.385782 eV Core-core repulsion = 22416.408184 eV Total energy + Delta-G solvation = -4010.977598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.98977 -39.71409 -38.34899 -36.65853 -35.01062 -34.71032 -33.87158 -32.85521 -31.65472 -31.17456 -29.33275 -27.61891 -26.94088 -24.87830 -23.53898 -23.00306 -22.12695 -21.79492 -20.61951 -19.24898 -17.91733 -17.47713 -17.22566 -17.12555 -16.42331 -16.14007 -15.74773 -15.51630 -15.42861 -14.78090 -14.69796 -14.45406 -14.33651 -13.90729 -13.77766 -13.52655 -13.45911 -13.31966 -13.14851 -13.06183 -12.81840 -12.48900 -12.09841 -11.88901 -11.85367 -11.77145 -11.49720 -11.46861 -11.12817 -10.99264 -10.42679 -10.35966 -10.24396 -9.82766 -9.81394 -9.54160 -9.44574 -9.25376 -8.50390 -8.11131 -7.98287 -6.43780 -3.84695 0.77084 0.83029 2.23210 2.76364 3.14832 3.25573 3.32683 3.45177 3.88315 3.98459 4.05577 4.12819 4.25444 4.27016 4.43374 4.51208 4.56236 4.74770 4.83730 4.87330 4.91225 4.99220 5.03051 5.13607 5.14215 5.22982 5.23748 5.37200 5.39794 5.44340 5.54930 5.57344 5.67361 5.75735 5.90200 5.91673 5.94650 5.97371 6.07711 6.24136 6.34419 7.07739 7.15040 7.53439 7.60231 7.62837 7.82031 8.04350 8.58954 9.15811 9.52142 10.03301 10.73990 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.044117 B = 0.001286 C = 0.001284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.524795 B =21770.245613 C =21807.607120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.121 4.121 3 C 0.098 3.902 4 N -0.484 5.484 5 C 0.092 3.908 6 C -0.157 4.157 7 C -0.024 4.024 8 C -0.107 4.107 9 C 0.514 3.486 10 O -0.530 6.530 11 N -0.729 5.729 12 C 0.121 3.879 13 C -0.129 4.129 14 C 0.062 3.938 15 N -0.669 5.669 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.134 0.866 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.403 0.597 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.349 0.651 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.697 21.514 18.711 30.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.123 4.123 3 C -0.059 4.059 4 N -0.192 5.192 5 C -0.065 4.065 6 C -0.176 4.176 7 C -0.033 4.033 8 C -0.147 4.147 9 C 0.299 3.701 10 O -0.405 6.405 11 N -0.381 5.381 12 C -0.003 4.003 13 C -0.167 4.167 14 C -0.068 4.068 15 N -0.302 5.302 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.122 0.878 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.172 0.828 32 H 0.173 0.827 33 H 0.152 0.848 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.237 0.763 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.048 0.952 42 H 0.092 0.908 43 H 0.168 0.832 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.226 0.774 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.753 22.028 18.548 31.494 hybrid contribution -1.591 -1.123 -0.594 2.036 sum 11.162 20.906 17.954 29.731 Atomic orbital electron populations 1.20754 0.90301 1.03530 1.02371 1.20746 0.97502 0.93602 1.00456 1.22636 0.89930 0.97320 0.96024 1.67648 1.08356 1.31506 1.11690 1.22692 1.00344 0.87561 0.95885 1.22000 0.94308 0.99889 1.01443 1.19524 0.93535 0.93655 0.96549 1.20714 1.02634 0.95831 0.95515 1.20369 0.77824 0.81069 0.90824 1.90767 1.52823 1.50811 1.46147 1.46015 1.59209 1.22884 1.10037 1.21342 1.00000 0.96500 0.82494 1.21743 1.00992 0.95761 0.98210 1.21829 0.99056 0.90244 0.95676 1.60055 1.31398 1.28551 1.10171 1.21673 0.99776 0.96209 0.90565 1.19804 0.84881 0.87685 0.85067 1.90516 1.61249 1.65173 1.29913 1.41872 1.50403 1.20445 1.07277 1.19761 1.31597 0.96568 0.95032 0.87850 1.25268 0.98118 0.99894 0.94650 1.69623 1.47029 1.39650 0.97949 0.85796 0.78712 0.81223 0.78586 1.19204 1.20764 1.20728 0.90709 0.90857 0.91477 0.82834 0.82743 0.84845 0.87363 0.87291 0.76316 0.91409 0.91184 0.90083 0.91222 0.95249 0.90769 0.83198 0.93812 0.89536 0.77439 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 9.30 36.01 0.33 -0.31 16 2 C -0.12 -0.97 5.90 -104.48 -0.62 -1.58 16 3 C 0.10 0.85 10.86 -17.54 -0.19 0.66 16 4 N -0.48 -4.88 10.36 -13.25 -0.14 -5.02 16 5 C 0.09 0.77 11.18 -17.55 -0.20 0.57 16 6 C -0.16 -1.19 9.80 -39.44 -0.39 -1.58 16 7 C -0.02 -0.19 4.41 -104.32 -0.46 -0.65 16 8 C -0.11 -0.58 5.19 -29.04 -0.15 -0.73 16 9 C 0.51 4.37 7.13 -10.99 -0.08 4.29 16 10 O -0.53 -6.92 16.03 5.55 0.09 -6.83 16 11 N -0.73 -4.95 5.56 -60.30 -0.33 -5.29 16 12 C 0.12 1.00 5.67 -4.04 -0.02 0.98 16 13 C -0.13 -1.10 5.59 -26.73 -0.15 -1.25 16 14 C 0.06 0.69 5.69 -3.82 -0.02 0.67 16 15 N -0.67 -10.28 6.13 -115.06 -0.70 -10.98 16 16 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 17 C 0.44 10.30 7.82 -10.98 -0.09 10.22 16 18 O -0.58 -15.71 15.78 5.55 0.09 -15.62 16 19 N -0.56 -14.21 5.29 -10.96 -0.06 -14.26 16 20 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 24 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 30 H 0.07 0.43 6.35 -51.93 -0.33 0.10 16 31 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 33 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 34 H 0.11 0.34 8.07 -51.93 -0.42 -0.08 16 35 H 0.11 0.36 7.12 -51.93 -0.37 -0.01 16 36 H 0.40 1.64 8.47 -40.82 -0.35 1.29 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.35 5.46 8.43 -39.29 -0.33 5.13 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 47 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 400.30 15.07 6.03 6.03 Total: -1.00 -35.88 400.30 -8.74 -44.63 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -7.12 Total: 11.03 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -2.30 Total: 4.14 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.51 Total: -59.24 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.18 Total: -22.46 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.88 -8.74 -44.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158111174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.088 kcal (2) G-P(sol) polarization free energy of solvation -35.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds