Wall clock time and date at job start Tue Mar 31 2020 19:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38221 * 120.41773 * 2 1 4 4 N 1.31862 * 120.76221 * 180.25125 * 3 2 1 5 5 C 1.31881 * 121.72315 * 0.04192 * 4 3 2 6 6 C 1.38185 * 120.76978 * 359.96041 * 5 4 3 7 7 C 1.38635 * 120.41887 * 180.27454 * 2 1 3 8 8 C 1.50701 * 120.78677 * 359.70635 * 7 2 1 9 9 C 1.50692 * 109.47149 * 85.00080 * 8 7 2 10 10 O 1.21287 * 120.00216 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00262 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00559 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47519 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47358 * 180.02562 * 13 12 11 15 15 N 1.46904 * 109.47196 * 180.02562 * 14 13 12 16 16 C 1.46890 * 110.99858 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.47095 * 180.02562 * 16 15 14 18 18 O 1.21286 * 119.99874 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99930 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00013 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00018 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00284 * 180.02562 * 20 19 17 23 23 N 1.31408 * 119.99664 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99963 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47538 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47536 * 119.99763 * 24 22 20 27 27 H 1.48498 * 109.46940 * 239.99477 * 24 22 20 28 28 H 1.08999 * 109.47245 * 269.72372 * 1 2 3 29 29 H 1.08991 * 109.46674 * 29.72400 * 1 2 3 30 30 H 1.09007 * 109.46846 * 149.72305 * 1 2 3 31 31 H 1.07993 * 119.62150 * 0.27487 * 3 2 1 32 32 H 1.08011 * 119.61586 * 179.97438 * 5 4 3 33 33 H 1.07998 * 120.41936 * 180.02562 * 6 5 4 34 34 H 1.09005 * 109.46822 * 205.00093 * 8 7 2 35 35 H 1.08995 * 109.47233 * 324.99475 * 8 7 2 36 36 H 0.97008 * 119.99915 * 0.02562 * 11 9 8 37 37 H 1.08992 * 109.47168 * 300.00180 * 12 11 9 38 38 H 1.09007 * 109.46777 * 60.00305 * 12 11 9 39 39 H 1.09005 * 109.47122 * 300.00576 * 13 12 11 40 40 H 1.09002 * 109.47208 * 60.00085 * 13 12 11 41 41 H 1.09001 * 109.46808 * 300.00038 * 14 13 12 42 42 H 1.09001 * 109.46654 * 60.00382 * 14 13 12 43 43 H 1.00896 * 110.99868 * 56.04290 * 15 14 13 44 44 H 1.09006 * 109.47677 * 299.99784 * 16 15 14 45 45 H 1.08997 * 109.47427 * 60.00074 * 16 15 14 46 46 H 0.96999 * 120.00584 * 0.02562 * 19 17 16 47 47 H 0.97008 * 119.99613 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0050 5 6 4.2256 0.0823 -0.0109 6 6 3.5948 -1.1471 -0.0113 7 6 2.2090 -1.1955 -0.0057 8 6 1.4831 -2.5162 -0.0054 9 6 1.1264 -2.8937 -1.4200 10 8 1.4311 -2.1620 -2.3381 11 7 0.4687 -4.0442 -1.6651 12 6 0.1214 -4.4110 -3.0402 13 6 -0.6142 -5.7525 -3.0401 14 6 -0.9764 -6.1358 -4.4763 15 7 -1.6833 -7.4235 -4.4761 16 6 -2.0481 -7.8240 -5.8414 17 6 -2.7703 -9.1461 -5.8011 18 8 -2.9618 -9.7004 -4.7394 19 7 -3.2025 -9.7131 -6.9449 20 6 -3.8590 -10.9160 -6.9083 21 1 -4.0303 -11.4092 -5.9628 22 6 -4.3042 -11.5008 -8.0876 23 7 -4.0962 -10.9005 -9.2379 24 14 -5.1994 -13.1396 -8.0375 25 1 -5.3056 -13.6029 -6.6306 26 1 -6.5601 -12.9781 -8.6100 27 1 -4.4437 -14.1408 -8.8322 28 1 -0.3634 -0.0050 1.0276 29 1 -0.3632 0.8924 -0.5095 30 1 -0.3633 -0.8876 -0.5182 31 1 1.6675 2.1276 0.0045 32 1 5.3047 0.1285 -0.0153 33 1 4.1737 -2.0588 -0.0158 34 1 2.1263 -3.2841 0.4244 35 1 0.5731 -2.4305 0.5883 36 1 0.2247 -4.6293 -0.9308 37 1 -0.5222 -3.6433 -3.4695 38 1 1.0314 -4.4962 -3.6344 39 1 0.0298 -6.5201 -2.6109 40 1 -1.5241 -5.6678 -2.4459 41 1 -1.6203 -5.3683 -4.9058 42 1 -0.0662 -6.2206 -5.0701 43 1 -2.4967 -7.3894 -3.8801 44 1 -2.6993 -7.0680 -6.2802 45 1 -1.1457 -7.9209 -6.4451 46 1 -3.0484 -9.2704 -7.7941 47 1 -4.4073 -11.3086 -10.0611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158111174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:56 Heat of formation + Delta-G solvation = -79.646144 kcal Electronic energy + Delta-G solvation = -26428.596972 eV Core-core repulsion = 22416.408184 eV Total energy + Delta-G solvation = -4012.188788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.56520 -40.37876 -40.14577 -37.66154 -36.13247 -35.64772 -35.31164 -33.39773 -33.28532 -32.45105 -29.97317 -28.49281 -27.93374 -26.40545 -24.64555 -23.68985 -22.75041 -22.56056 -21.30475 -21.01265 -19.90437 -18.12401 -17.89899 -17.77170 -17.62007 -17.22609 -16.67131 -16.54583 -16.35558 -15.99258 -15.94439 -15.55505 -15.34973 -15.09222 -14.92200 -14.42597 -14.35309 -14.25725 -13.78132 -13.61560 -13.55133 -13.52403 -13.33323 -13.17113 -12.92080 -12.84427 -12.67026 -12.41943 -12.39812 -12.26063 -12.10641 -11.83930 -11.51374 -11.14155 -10.42291 -10.41587 -10.34778 -10.10671 -10.01877 -9.80866 -9.33853 -8.47023 -5.95898 0.20530 0.25614 1.37011 1.42571 1.56725 1.61392 2.04709 2.15982 2.30090 2.85438 2.97171 3.20520 3.49335 3.52907 3.61598 3.80335 3.91944 4.01493 4.01874 4.07430 4.16171 4.21749 4.33935 4.42701 4.48456 4.51221 4.55618 4.57601 4.58993 4.70989 4.74559 4.76832 4.79485 4.90145 5.06538 5.17075 5.18756 5.22152 5.38249 5.41119 5.44314 5.81342 5.88216 6.09456 6.41511 6.55015 6.59585 7.03858 7.12309 7.24665 7.55899 8.10765 8.70569 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.044117 B = 0.001286 C = 0.001284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.524795 B =21770.245613 C =21807.607120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.130 4.130 3 C 0.078 3.922 4 N -0.514 5.514 5 C 0.074 3.926 6 C -0.163 4.163 7 C -0.038 4.038 8 C -0.100 4.100 9 C 0.514 3.486 10 O -0.581 6.581 11 N -0.717 5.717 12 C 0.128 3.872 13 C -0.114 4.114 14 C 0.062 3.938 15 N -0.683 5.683 16 C 0.064 3.936 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.168 0.832 32 H 0.173 0.827 33 H 0.155 0.845 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.418 0.582 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.040 0.960 42 H 0.077 0.923 43 H 0.346 0.654 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.484 21.239 19.469 31.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.132 4.132 3 C -0.078 4.078 4 N -0.223 5.223 5 C -0.082 4.082 6 C -0.182 4.182 7 C -0.046 4.046 8 C -0.139 4.139 9 C 0.301 3.699 10 O -0.461 6.461 11 N -0.370 5.370 12 C 0.003 3.997 13 C -0.153 4.153 14 C -0.068 4.068 15 N -0.315 5.315 16 C -0.068 4.068 17 C 0.224 3.776 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.098 0.902 22 C -0.212 4.212 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.185 0.815 32 H 0.190 0.810 33 H 0.172 0.828 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.256 0.744 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.165 0.835 44 H 0.084 0.916 45 H 0.121 0.879 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.541 21.754 19.318 31.682 hybrid contribution -1.494 -1.000 -0.809 1.971 sum 11.048 20.754 18.510 29.923 Atomic orbital electron populations 1.20780 0.88862 1.03390 1.03607 1.21041 0.98681 0.93566 0.99928 1.22966 0.89891 0.98476 0.96498 1.67634 1.09218 1.32623 1.12838 1.23084 1.01357 0.87707 0.96048 1.22306 0.94738 1.00414 1.00762 1.19889 0.93906 0.94693 0.96146 1.20775 1.04117 0.95305 0.93703 1.20875 0.76905 0.80595 0.91537 1.90752 1.54983 1.52421 1.47913 1.45899 1.58386 1.22717 1.09981 1.21150 0.99264 0.96037 0.83248 1.21582 1.01380 0.95615 0.96683 1.21919 0.98764 0.88535 0.97556 1.60057 1.31395 1.31184 1.08881 1.21533 0.99985 0.92983 0.92345 1.20890 0.83666 0.89164 0.83830 1.90482 1.62475 1.66792 1.31185 1.41948 1.50870 1.20170 1.08080 1.19725 1.33805 0.98225 0.94673 0.90227 1.26045 0.98252 1.02956 0.93978 1.69681 1.47216 1.40868 0.98395 0.84862 0.77940 0.77169 0.78316 1.19679 1.19604 1.19687 0.88658 0.90658 0.91926 0.81530 0.81038 0.82750 0.84536 0.84744 0.74442 0.92166 0.92301 0.90150 0.90206 0.94191 0.90503 0.83550 0.91579 0.87918 0.76983 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.30 71.24 0.66 -0.45 16 2 C -0.13 -1.99 5.90 -19.77 -0.12 -2.10 16 3 C 0.08 1.37 10.86 84.68 0.92 2.29 16 4 N -0.51 -10.58 10.36 -195.84 -2.03 -12.60 16 5 C 0.07 1.23 11.18 84.67 0.95 2.18 16 6 C -0.16 -2.32 9.80 22.36 0.22 -2.10 16 7 C -0.04 -0.54 4.41 -19.67 -0.09 -0.63 16 8 C -0.10 -0.82 5.19 29.10 0.15 -0.67 16 9 C 0.51 7.83 7.13 87.65 0.63 8.46 16 10 O -0.58 -14.89 16.03 -3.05 -0.05 -14.94 16 11 N -0.72 -8.15 5.56 -463.07 -2.57 -10.72 16 12 C 0.13 1.91 5.67 86.38 0.49 2.40 16 13 C -0.11 -1.71 5.59 30.59 0.17 -1.54 16 14 C 0.06 1.24 5.69 86.30 0.49 1.73 16 15 N -0.68 -19.90 6.13 -517.93 -3.17 -23.07 16 16 C 0.06 2.12 6.17 85.56 0.53 2.65 16 17 C 0.44 20.48 7.82 87.66 0.69 21.16 16 18 O -0.62 -33.95 15.78 -3.05 -0.05 -34.00 16 19 N -0.57 -29.19 5.29 -306.99 -1.62 -30.82 16 20 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -49.41 13.05 21.66 0.28 -49.12 16 24 Si 0.99 42.52 29.55 68.60 2.03 44.55 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 30 H 0.06 0.70 6.35 -2.38 -0.02 0.68 16 31 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 32 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 33 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 34 H 0.14 0.36 8.07 -2.38 -0.02 0.34 16 35 H 0.13 0.42 7.12 -2.39 -0.02 0.41 16 36 H 0.42 2.13 8.47 -92.70 -0.79 1.35 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.35 10.40 8.43 -89.70 -0.76 9.64 16 44 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 45 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 46 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 47 H 0.28 13.90 8.31 -92.70 -0.77 13.13 16 Total: -1.00 -79.11 400.30 -1.48 -80.59 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: -1.26 Total: 35.04 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 6.97 Total: 15.10 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -9.11 Total: -126.34 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -0.10 Total: -48.94 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -79.11 -1.48 -80.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158111174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.939 kcal (2) G-P(sol) polarization free energy of solvation -79.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds