Wall clock time and date at job start Tue Mar 31 2020 19:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32172 * 119.14286 * 2 1 4 4 C 1.32362 * 120.60257 * 180.27634 * 3 2 1 5 5 C 1.47501 * 120.50568 * 179.69534 * 4 3 2 6 6 O 1.21597 * 119.99987 * 152.15449 * 5 4 3 7 7 N 1.34777 * 120.00175 * 332.15136 * 5 4 3 8 8 C 1.46924 * 120.62957 * 181.63527 * 7 5 4 9 9 C 1.53632 * 108.54221 * 126.37017 * 8 7 5 10 10 C 1.53038 * 109.23893 * 54.85578 * 9 8 7 11 11 C 1.53001 * 109.44717 * 178.49874 * 10 9 8 12 12 N 1.46503 * 109.47290 * 295.05986 * 11 10 9 13 13 C 1.36935 * 120.00186 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99961 * 359.97438 * 13 12 11 15 15 C 1.38810 * 119.99620 * 180.02562 * 13 12 11 16 16 N 1.31617 * 120.00386 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99748 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46892 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47226 * 119.99543 * 17 15 13 20 20 H 1.48493 * 109.47102 * 240.00002 * 17 15 13 21 21 C 1.53046 * 109.54155 * 298.51025 * 10 9 8 22 22 C 1.46922 * 120.62860 * 1.92088 * 7 5 4 23 23 C 1.46673 * 118.98257 * 359.71228 * 4 3 2 24 24 O 1.21853 * 120.78320 * 180.02562 * 23 4 3 25 25 N 1.35149 * 118.43078 * 0.02562 * 23 4 3 26 26 H 0.97001 * 120.36868 * 179.97438 * 25 23 4 27 27 C 1.34895 * 119.26450 * 359.97438 * 25 23 4 28 28 C 1.50706 * 119.50114 * 180.02562 * 27 25 23 29 29 H 1.09007 * 109.47003 * 270.29123 * 1 2 3 30 30 H 1.09007 * 109.47136 * 30.28757 * 1 2 3 31 31 H 1.08999 * 109.47234 * 150.29228 * 1 2 3 32 32 H 1.08993 * 109.58650 * 246.20119 * 8 7 5 33 33 H 1.09001 * 109.59055 * 6.63271 * 8 7 5 34 34 H 1.09002 * 109.63583 * 294.86714 * 9 8 7 35 35 H 1.08998 * 109.43115 * 174.72437 * 9 8 7 36 36 H 1.09001 * 109.46023 * 58.53353 * 10 9 8 37 37 H 1.08993 * 109.47552 * 55.06458 * 11 10 9 38 38 H 1.09002 * 109.47164 * 175.06674 * 11 10 9 39 39 H 0.96999 * 119.99328 * 0.02562 * 12 11 10 40 40 H 0.97006 * 119.99953 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.49616 * 301.41814 * 21 10 9 42 42 H 1.09002 * 109.52457 * 181.33129 * 21 10 9 43 43 H 1.08999 * 109.58925 * 353.36382 * 22 7 5 44 44 H 1.08998 * 109.58848 * 113.65714 * 22 7 5 45 45 H 1.09004 * 109.46915 * 359.97438 * 28 27 25 46 46 H 1.08993 * 109.47177 * 240.00445 * 28 27 25 47 47 H 1.08990 * 109.47409 * 119.99617 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1544 0.0000 4 6 3.4739 1.1881 -0.0055 5 6 4.1900 2.4776 -0.0122 6 8 5.3012 2.5585 0.4749 7 7 3.6127 3.5662 -0.5584 8 6 4.3277 4.8489 -0.6046 9 6 4.3342 5.3526 -2.0560 10 6 2.8956 5.4162 -2.5741 11 6 2.8934 5.9528 -4.0069 12 7 3.3698 7.3383 -4.0103 13 6 3.4538 8.0306 -5.1887 14 1 3.1693 7.5552 -6.1157 15 6 3.9057 9.3431 -5.1918 16 7 4.2528 9.9223 -4.0621 17 14 4.0210 10.2873 -6.7995 18 1 3.5757 9.4173 -7.9176 19 1 3.1520 11.4895 -6.7309 20 1 5.4274 10.7055 -7.0281 21 6 2.2817 4.0144 -2.5538 22 6 2.2542 3.4942 -1.1131 23 6 4.2170 -0.0764 -0.0052 24 8 5.4355 -0.0836 -0.0096 25 7 3.5184 -1.2333 0.0003 26 1 3.9813 -2.0857 0.0003 27 6 2.1702 -1.1895 0.0057 28 6 1.3858 -2.4763 0.0123 29 1 -0.3633 0.0052 1.0277 30 1 -0.3634 0.8874 -0.5183 31 1 -0.3633 -0.8926 -0.5093 32 1 3.8214 5.5727 0.0339 33 1 5.3524 4.7088 -0.2605 34 1 4.9149 4.6711 -2.6777 35 1 4.7784 6.3472 -2.0927 36 1 2.3092 6.0787 -1.9373 37 1 3.5505 5.3412 -4.6250 38 1 1.8802 5.9162 -4.4071 39 1 3.6256 7.7651 -3.1776 40 1 4.5690 10.8394 -4.0644 41 1 2.8818 3.3455 -3.1707 42 1 1.2651 4.0562 -2.9450 43 1 1.9103 2.4599 -1.1047 44 1 1.5817 4.1079 -0.5137 45 1 2.0743 -3.3214 0.0113 46 1 0.7544 -2.5215 -0.8750 47 1 0.7617 -2.5168 0.9049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205511414.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:19 Heat of formation + Delta-G solvation = -10.211575 kcal Electronic energy + Delta-G solvation = -29096.877495 eV Core-core repulsion = 25087.699616 eV Total energy + Delta-G solvation = -4009.177879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.21484 -39.89492 -38.41014 -37.46630 -35.98304 -34.80676 -33.60331 -32.65738 -30.92933 -30.39337 -29.57234 -27.45484 -26.36491 -25.16328 -24.03227 -23.57919 -22.57909 -21.72658 -20.43588 -19.49967 -19.06853 -18.37229 -17.21983 -16.85932 -16.64819 -16.06922 -15.87350 -15.08564 -14.75346 -14.55506 -14.54568 -14.19542 -14.11276 -13.80350 -13.65197 -13.61044 -13.54272 -13.34696 -13.03981 -12.79909 -12.51419 -12.35293 -12.20368 -12.07728 -11.79322 -11.72587 -11.41605 -10.94673 -10.92092 -10.80758 -10.42289 -10.26969 -10.23666 -10.09312 -9.88506 -9.66602 -9.27746 -8.82002 -8.56944 -8.33615 -6.85166 -5.71343 -2.99191 -0.25743 1.23215 1.93980 2.47842 2.93890 3.25531 3.46896 3.52259 3.54647 3.55094 3.72599 3.82427 4.15422 4.52302 4.59865 4.63988 4.75558 4.96204 4.99348 5.10446 5.17029 5.18435 5.20804 5.30926 5.40014 5.54906 5.59925 5.62946 5.76394 5.80314 5.87416 5.92518 6.06212 6.07553 6.15871 6.22541 6.27493 6.40235 6.51458 6.61416 6.78858 6.90169 7.01156 7.05483 7.33886 7.46127 7.75561 8.18405 8.48037 9.59071 10.18235 10.52920 11.51750 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021713 B = 0.002387 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.237568 B =11728.225488 C =12353.635954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.036 4.036 3 N -0.343 5.343 4 C 0.013 3.987 5 C 0.582 3.418 6 O -0.516 6.516 7 N -0.587 5.587 8 C 0.111 3.889 9 C -0.123 4.123 10 C -0.095 4.095 11 C 0.159 3.841 12 N -0.732 5.732 13 C -0.236 4.236 14 H 0.069 0.931 15 C -0.016 4.016 16 N -0.933 5.933 17 Si 0.906 3.094 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.128 4.128 22 C 0.089 3.911 23 C 0.499 3.501 24 O -0.486 6.486 25 N -0.586 5.586 26 H 0.421 0.579 27 C 0.153 3.847 28 C -0.128 4.128 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.118 0.882 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.570 -29.046 11.385 33.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.161 4.161 3 N -0.061 5.061 4 C -0.154 4.154 5 C 0.367 3.633 6 O -0.390 6.390 7 N -0.320 5.320 8 C -0.010 4.010 9 C -0.161 4.161 10 C -0.114 4.114 11 C 0.031 3.969 12 N -0.376 5.376 13 C -0.368 4.368 14 H 0.087 0.913 15 C -0.212 4.212 16 N -0.583 5.583 17 Si 0.737 3.263 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.167 4.167 22 C -0.033 4.033 23 C 0.290 3.710 24 O -0.358 6.358 25 N -0.221 5.221 26 H 0.262 0.738 27 C 0.038 3.962 28 C -0.185 4.185 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.218 0.782 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.135 0.865 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.121 0.879 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.744 -28.171 11.473 32.259 hybrid contribution 0.711 -0.375 -0.710 1.073 sum -10.033 -28.546 10.763 32.115 Atomic orbital electron populations 1.20553 0.86711 1.03923 1.03184 1.20260 0.98084 0.85727 1.12073 1.67680 1.08213 1.28414 1.01743 1.23924 0.88919 0.93953 1.08644 1.17048 0.84882 0.81835 0.79556 1.90859 1.18597 1.83907 1.45680 1.47943 1.17037 1.09376 1.57678 1.21885 0.98205 0.82877 0.98050 1.21999 0.97346 1.02649 0.94149 1.21324 0.95961 0.95469 0.98598 1.20669 0.96481 0.87138 0.92620 1.42394 1.78887 1.08747 1.07610 1.19273 1.36194 0.94251 0.87035 0.91260 1.24732 1.02327 0.97223 0.96871 1.69666 1.50880 1.13306 1.24402 0.86129 0.77231 0.79905 0.83014 1.20635 1.21924 1.21917 1.21962 1.01476 0.97155 0.96086 1.22525 0.82209 1.04743 0.93834 1.19004 0.88378 0.83908 0.79670 1.91062 1.11500 1.85337 1.47900 1.43741 1.06393 1.11974 1.60026 0.73793 1.21531 0.83468 0.98999 0.92221 1.21215 1.00521 0.91357 1.05428 0.90652 0.89951 0.90655 0.91034 0.89052 0.91858 0.89335 0.90925 0.96546 0.96459 0.78228 0.93610 0.91988 0.90737 0.86486 0.91139 0.90306 0.87914 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.29 9.66 36.01 0.35 0.05 16 2 C -0.04 -0.24 6.70 -83.18 -0.56 -0.80 16 3 N -0.34 -3.52 6.66 -4.85 -0.03 -3.55 16 4 C 0.01 0.18 6.52 -80.46 -0.52 -0.35 16 5 C 0.58 9.53 7.52 -12.49 -0.09 9.44 16 6 O -0.52 -10.32 15.38 -12.16 -0.19 -10.50 16 7 N -0.59 -8.67 2.97 -173.74 -0.52 -9.19 16 8 C 0.11 1.71 6.46 -3.48 -0.02 1.68 16 9 C -0.12 -2.07 5.26 -26.38 -0.14 -2.21 16 10 C -0.09 -1.55 2.19 -90.58 -0.20 -1.75 16 11 C 0.16 3.25 5.65 -4.04 -0.02 3.22 16 12 N -0.73 -18.80 5.32 -59.91 -0.32 -19.12 16 13 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 14 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 15 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 16 N -0.93 -28.65 13.06 55.49 0.72 -27.92 16 17 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 21 C -0.13 -1.69 5.36 -26.60 -0.14 -1.84 16 22 C 0.09 1.09 6.01 -3.71 -0.02 1.07 16 23 C 0.50 6.35 7.90 -12.69 -0.10 6.25 16 24 O -0.49 -8.24 16.75 -12.39 -0.21 -8.45 16 25 N -0.59 -4.10 5.29 -9.46 -0.05 -4.15 16 26 H 0.42 1.72 8.64 -40.82 -0.35 1.37 16 27 C 0.15 0.74 6.78 -81.98 -0.56 0.18 16 28 C -0.13 -0.02 8.83 36.01 0.32 0.30 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.07 6.42 -51.93 -0.33 -0.27 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.49 7.01 -51.93 -0.36 1.13 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.09 1.67 7.15 -51.93 -0.37 1.29 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.38 10.27 6.84 -40.82 -0.28 9.99 16 40 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.12 1.31 4.16 -63.87 -0.27 1.04 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 -0.08 7.90 -51.93 -0.41 -0.49 16 46 H 0.10 -0.10 7.35 -51.93 -0.38 -0.48 16 47 H 0.10 -0.09 8.09 -51.93 -0.42 -0.52 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -38.49 377.75 -8.83 -47.32 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.95 Total: 4.27 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -1.96 Total: 7.80 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -0.19 Total: -63.93 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.39 Total: -18.95 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.49 -8.83 -47.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205511414.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.105 kcal (2) G-P(sol) polarization free energy of solvation -38.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds