Wall clock time and date at job start Tue Mar 31 2020 19:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32172 * 119.14286 * 2 1 4 4 C 1.32362 * 120.60257 * 180.27634 * 3 2 1 5 5 C 1.47501 * 120.50568 * 179.69534 * 4 3 2 6 6 O 1.21597 * 119.99987 * 152.15449 * 5 4 3 7 7 N 1.34777 * 120.00175 * 332.15136 * 5 4 3 8 8 C 1.46924 * 120.62957 * 181.63527 * 7 5 4 9 9 C 1.53632 * 108.54221 * 126.37017 * 8 7 5 10 10 C 1.53038 * 109.23893 * 54.85578 * 9 8 7 11 11 C 1.53001 * 109.44717 * 178.49874 * 10 9 8 12 12 N 1.46503 * 109.47290 * 295.05986 * 11 10 9 13 13 C 1.36935 * 120.00186 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99961 * 359.97438 * 13 12 11 15 15 C 1.38810 * 119.99620 * 180.02562 * 13 12 11 16 16 N 1.31617 * 120.00386 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99748 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46892 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47226 * 119.99543 * 17 15 13 20 20 H 1.48493 * 109.47102 * 240.00002 * 17 15 13 21 21 C 1.53046 * 109.54155 * 298.51025 * 10 9 8 22 22 C 1.46922 * 120.62860 * 1.92088 * 7 5 4 23 23 C 1.46673 * 118.98257 * 359.71228 * 4 3 2 24 24 O 1.21853 * 120.78320 * 180.02562 * 23 4 3 25 25 N 1.35149 * 118.43078 * 0.02562 * 23 4 3 26 26 H 0.97001 * 120.36868 * 179.97438 * 25 23 4 27 27 C 1.34895 * 119.26450 * 359.97438 * 25 23 4 28 28 C 1.50706 * 119.50114 * 180.02562 * 27 25 23 29 29 H 1.09007 * 109.47003 * 270.29123 * 1 2 3 30 30 H 1.09007 * 109.47136 * 30.28757 * 1 2 3 31 31 H 1.08999 * 109.47234 * 150.29228 * 1 2 3 32 32 H 1.08993 * 109.58650 * 246.20119 * 8 7 5 33 33 H 1.09001 * 109.59055 * 6.63271 * 8 7 5 34 34 H 1.09002 * 109.63583 * 294.86714 * 9 8 7 35 35 H 1.08998 * 109.43115 * 174.72437 * 9 8 7 36 36 H 1.09001 * 109.46023 * 58.53353 * 10 9 8 37 37 H 1.08993 * 109.47552 * 55.06458 * 11 10 9 38 38 H 1.09002 * 109.47164 * 175.06674 * 11 10 9 39 39 H 0.96999 * 119.99328 * 0.02562 * 12 11 10 40 40 H 0.97006 * 119.99953 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.49616 * 301.41814 * 21 10 9 42 42 H 1.09002 * 109.52457 * 181.33129 * 21 10 9 43 43 H 1.08999 * 109.58925 * 353.36382 * 22 7 5 44 44 H 1.08998 * 109.58848 * 113.65714 * 22 7 5 45 45 H 1.09004 * 109.46915 * 359.97438 * 28 27 25 46 46 H 1.08993 * 109.47177 * 240.00445 * 28 27 25 47 47 H 1.08990 * 109.47409 * 119.99617 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1544 0.0000 4 6 3.4739 1.1881 -0.0055 5 6 4.1900 2.4776 -0.0122 6 8 5.3012 2.5585 0.4749 7 7 3.6127 3.5662 -0.5584 8 6 4.3277 4.8489 -0.6046 9 6 4.3342 5.3526 -2.0560 10 6 2.8956 5.4162 -2.5741 11 6 2.8934 5.9528 -4.0069 12 7 3.3698 7.3383 -4.0103 13 6 3.4538 8.0306 -5.1887 14 1 3.1693 7.5552 -6.1157 15 6 3.9057 9.3431 -5.1918 16 7 4.2528 9.9223 -4.0621 17 14 4.0210 10.2873 -6.7995 18 1 3.5757 9.4173 -7.9176 19 1 3.1520 11.4895 -6.7309 20 1 5.4274 10.7055 -7.0281 21 6 2.2817 4.0144 -2.5538 22 6 2.2542 3.4942 -1.1131 23 6 4.2170 -0.0764 -0.0052 24 8 5.4355 -0.0836 -0.0096 25 7 3.5184 -1.2333 0.0003 26 1 3.9813 -2.0857 0.0003 27 6 2.1702 -1.1895 0.0057 28 6 1.3858 -2.4763 0.0123 29 1 -0.3633 0.0052 1.0277 30 1 -0.3634 0.8874 -0.5183 31 1 -0.3633 -0.8926 -0.5093 32 1 3.8214 5.5727 0.0339 33 1 5.3524 4.7088 -0.2605 34 1 4.9149 4.6711 -2.6777 35 1 4.7784 6.3472 -2.0927 36 1 2.3092 6.0787 -1.9373 37 1 3.5505 5.3412 -4.6250 38 1 1.8802 5.9162 -4.4071 39 1 3.6256 7.7651 -3.1776 40 1 4.5690 10.8394 -4.0644 41 1 2.8818 3.3455 -3.1707 42 1 1.2651 4.0562 -2.9450 43 1 1.9103 2.4599 -1.1047 44 1 1.5817 4.1079 -0.5137 45 1 2.0743 -3.3214 0.0113 46 1 0.7544 -2.5215 -0.8750 47 1 0.7617 -2.5168 0.9049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205511414.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:18 Heat of formation + Delta-G solvation = -38.666627 kcal Electronic energy + Delta-G solvation = -29098.111399 eV Core-core repulsion = 25087.699616 eV Total energy + Delta-G solvation = -4010.411783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.97132 -41.04682 -39.31539 -38.76313 -36.80923 -36.45043 -34.51825 -34.02396 -32.23623 -32.08515 -30.04035 -28.47723 -27.61185 -25.76142 -25.51408 -24.84754 -23.69611 -23.15192 -21.66243 -20.58440 -19.89123 -19.35506 -19.00613 -17.96338 -17.42638 -17.08362 -16.93786 -16.68256 -16.17586 -15.72260 -15.40615 -15.34828 -15.17764 -15.08461 -14.91566 -14.50202 -14.37197 -13.98803 -13.87774 -13.83112 -13.77527 -13.46301 -13.16702 -12.92047 -12.78089 -12.76172 -12.67000 -12.42888 -12.38627 -12.14380 -12.10771 -11.88790 -11.67864 -11.43560 -11.41320 -11.36827 -10.92773 -10.24642 -9.73446 -9.07055 -8.97828 -7.94249 -5.22611 -0.96450 0.47312 1.17686 1.46743 1.48165 1.51725 1.58059 1.95798 2.40469 2.56449 2.86741 2.99359 3.39105 3.42230 3.64918 3.74904 3.82729 3.86379 3.91240 4.11801 4.30944 4.34093 4.44450 4.56069 4.64135 4.66183 4.69794 4.73717 4.88932 4.91149 4.93977 4.97472 5.00341 5.08628 5.10992 5.13636 5.14832 5.22959 5.25460 5.30679 5.48091 5.53936 5.54552 5.61525 6.27527 6.28630 6.40796 6.55762 7.04241 7.34522 8.11550 8.35018 9.29574 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021713 B = 0.002387 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.237568 B =11728.225488 C =12353.635954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.051 4.051 3 N -0.329 5.329 4 C -0.061 4.061 5 C 0.577 3.423 6 O -0.573 6.573 7 N -0.589 5.589 8 C 0.117 3.883 9 C -0.114 4.114 10 C -0.084 4.084 11 C 0.158 3.842 12 N -0.744 5.744 13 C -0.243 4.243 14 H 0.074 0.926 15 C -0.078 4.078 16 N -0.970 5.970 17 Si 0.974 3.026 18 H -0.266 1.266 19 H -0.291 1.291 20 H -0.295 1.295 21 C -0.118 4.118 22 C 0.094 3.906 23 C 0.492 3.508 24 O -0.549 6.549 25 N -0.563 5.563 26 H 0.438 0.562 27 C 0.200 3.800 28 C -0.131 4.131 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.010 0.990 38 H 0.028 0.972 39 H 0.375 0.625 40 H 0.251 0.749 41 H 0.055 0.945 42 H 0.100 0.900 43 H 0.135 0.865 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.132 0.868 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.726 -32.753 10.875 37.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.181 4.181 3 N -0.048 5.048 4 C -0.221 4.221 5 C 0.365 3.635 6 O -0.451 6.451 7 N -0.321 5.321 8 C -0.005 4.005 9 C -0.152 4.152 10 C -0.103 4.103 11 C 0.032 3.968 12 N -0.387 5.387 13 C -0.375 4.375 14 H 0.092 0.908 15 C -0.270 4.270 16 N -0.621 5.621 17 Si 0.803 3.197 18 H -0.190 1.190 19 H -0.218 1.218 20 H -0.223 1.223 21 C -0.157 4.157 22 C -0.027 4.027 23 C 0.287 3.713 24 O -0.427 6.427 25 N -0.198 5.198 26 H 0.282 0.718 27 C 0.081 3.919 28 C -0.188 4.188 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.130 0.870 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.028 0.972 38 H 0.045 0.955 39 H 0.207 0.793 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.119 0.881 43 H 0.151 0.849 44 H 0.102 0.898 45 H 0.118 0.882 46 H 0.150 0.850 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.922 -31.899 10.937 36.876 hybrid contribution 1.728 0.428 -0.529 1.857 sum -13.194 -31.471 10.408 35.676 Atomic orbital electron populations 1.20742 0.83559 1.05498 1.04455 1.21099 0.99937 0.85248 1.11824 1.67486 1.06828 1.30680 0.99771 1.23017 0.89786 0.92481 1.16840 1.17573 0.84452 0.83122 0.78397 1.90795 1.21157 1.84978 1.48205 1.48023 1.17799 1.08724 1.57573 1.21694 0.97856 0.83942 0.96997 1.21840 0.97607 1.00735 0.95040 1.21224 0.95632 0.97496 0.95909 1.20827 0.96221 0.84597 0.95171 1.42611 1.79035 1.10562 1.06528 1.19671 1.35113 0.94635 0.88093 0.90780 1.25580 1.02832 0.98387 1.00202 1.69826 1.52296 1.13397 1.26536 0.85065 0.76736 0.78430 0.79484 1.19034 1.21797 1.22253 1.21913 1.02383 0.94444 0.96933 1.22679 0.81003 1.06018 0.93023 1.18990 0.87764 0.85122 0.79394 1.91014 1.13852 1.86282 1.51575 1.43714 1.07490 1.11381 1.57184 0.71792 1.22526 0.82351 1.01113 0.85886 1.21610 1.00879 0.88535 1.07788 0.89458 0.90589 0.87019 0.89775 0.90882 0.93303 0.91950 0.90788 0.97198 0.95451 0.79297 0.94033 0.92590 0.88143 0.84875 0.89766 0.88243 0.85005 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.12 9.66 71.24 0.69 0.57 16 2 C -0.05 -0.49 6.70 42.03 0.28 -0.21 16 3 N -0.33 -6.28 6.66 -169.24 -1.13 -7.41 16 4 C -0.06 -1.69 6.52 43.71 0.29 -1.41 16 5 C 0.58 20.45 7.52 86.69 0.65 21.11 16 6 O -0.57 -25.42 15.38 12.65 0.19 -25.23 16 7 N -0.59 -18.31 2.97 -821.85 -2.44 -20.75 16 8 C 0.12 3.89 6.46 86.51 0.56 4.45 16 9 C -0.11 -4.09 5.26 30.82 0.16 -3.92 16 10 C -0.08 -2.77 2.19 -10.77 -0.02 -2.80 16 11 C 0.16 6.51 5.65 86.38 0.49 7.00 16 12 N -0.74 -39.07 5.32 -343.46 -1.83 -40.90 16 13 C -0.24 -14.01 9.99 84.03 0.84 -13.17 16 14 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 15 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 16 N -0.97 -60.92 13.06 21.65 0.28 -60.64 16 17 Si 0.97 47.37 29.55 68.60 2.03 49.40 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 20 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 21 C -0.12 -2.99 5.36 30.68 0.16 -2.83 16 22 C 0.09 2.23 6.01 86.37 0.52 2.75 16 23 C 0.49 12.95 7.90 86.39 0.68 13.64 16 24 O -0.55 -20.20 16.75 11.84 0.20 -20.01 16 25 N -0.56 -6.62 5.29 -301.77 -1.60 -8.21 16 26 H 0.44 2.38 8.64 -92.71 -0.80 1.58 16 27 C 0.20 1.01 6.78 41.61 0.28 1.29 16 28 C -0.13 0.89 8.83 71.24 0.63 1.52 16 29 H 0.09 -0.01 8.14 -2.38 -0.02 -0.02 16 30 H 0.08 0.29 8.14 -2.38 -0.02 0.27 16 31 H 0.11 -0.62 6.42 -2.39 -0.02 -0.64 16 32 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.07 2.68 7.01 -2.39 -0.02 2.67 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 35 H 0.06 2.55 7.15 -2.39 -0.02 2.53 16 36 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.37 20.81 6.84 -92.71 -0.63 20.17 16 40 H 0.25 15.23 8.31 -92.70 -0.77 14.46 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.13 2.78 4.16 -25.96 -0.11 2.67 16 44 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.10 -0.91 7.90 -2.39 -0.02 -0.93 16 46 H 0.13 -1.35 7.35 -2.39 -0.02 -1.37 16 47 H 0.13 -1.28 8.09 -2.39 -0.02 -1.30 16 Total: -1.00 -92.45 377.75 1.88 -90.57 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -0.52 Total: 19.33 kcal Atomic # 6 Polarization: 17.17 SS G_CDS: 6.68 Total: 23.84 kcal Atomic # 7 Polarization: -131.21 SS G_CDS: -6.70 Total: -137.91 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: 0.39 Total: -45.23 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -92.45 1.88 -90.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205511414.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.908 kcal (2) G-P(sol) polarization free energy of solvation -92.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds