Wall clock time and date at job start Tue Mar 31 2020 19:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38172 * 120.49609 * 2 1 4 4 N 1.31799 * 120.89270 * 180.02562 * 3 2 1 5 5 C 1.31831 * 122.04657 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.90120 * 0.02562 * 5 4 3 7 7 C 1.39794 * 120.50174 * 180.02562 * 2 1 3 8 8 C 1.48151 * 120.92200 * 0.02562 * 7 2 1 9 9 O 1.21520 * 120.00018 * 353.89927 * 8 7 2 10 10 N 1.34773 * 120.00194 * 173.90280 * 8 7 2 11 11 C 1.46503 * 120.00087 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47042 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.46892 * 179.97438 * 12 11 10 14 14 N 1.46899 * 109.46617 * 179.97438 * 13 12 11 15 15 C 1.46900 * 110.99971 * 66.04864 * 14 13 12 16 16 C 1.46902 * 110.99718 * 189.99636 * 14 13 12 17 17 C 1.50704 * 109.47196 * 170.00227 * 16 14 13 18 18 O 1.21295 * 119.99865 * 0.02562 * 17 16 14 19 19 N 1.34769 * 120.00258 * 180.02562 * 17 16 14 20 20 C 1.37099 * 120.00149 * 180.02562 * 19 17 16 21 21 H 1.07993 * 120.00001 * 0.02562 * 20 19 17 22 22 C 1.38947 * 119.99991 * 179.97438 * 20 19 17 23 23 N 1.31417 * 120.00272 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00070 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47385 * 59.99731 * 24 22 20 26 26 H 1.48500 * 109.47368 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46907 * 299.99945 * 24 22 20 28 28 H 1.09001 * 109.46982 * 263.64564 * 1 2 3 29 29 H 1.08993 * 109.47215 * 23.64814 * 1 2 3 30 30 H 1.08997 * 109.46828 * 143.64974 * 1 2 3 31 31 H 1.07996 * 119.55522 * 0.03793 * 3 2 1 32 32 H 1.08003 * 119.55145 * 179.97438 * 5 4 3 33 33 H 1.08003 * 120.49908 * 179.97438 * 6 5 4 34 34 H 0.96998 * 119.99972 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.46506 * 299.99636 * 11 10 8 36 36 H 1.08995 * 109.47436 * 59.99740 * 11 10 8 37 37 H 1.08998 * 109.46521 * 299.99713 * 12 11 10 38 38 H 1.08995 * 109.47356 * 59.99521 * 12 11 10 39 39 H 1.08998 * 109.46725 * 299.99509 * 13 12 11 40 40 H 1.09002 * 109.47123 * 59.99977 * 13 12 11 41 41 H 1.09004 * 109.47510 * 59.99619 * 15 14 13 42 42 H 1.09001 * 109.47608 * 179.97438 * 15 14 13 43 43 H 1.09003 * 109.47352 * 299.99513 * 15 14 13 44 44 H 1.08998 * 109.47114 * 290.00522 * 16 14 13 45 45 H 1.09003 * 109.46829 * 50.00559 * 16 14 13 46 46 H 0.97004 * 120.00031 * 0.02562 * 19 17 16 47 47 H 0.96998 * 120.00078 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5262 1.1997 -0.0005 5 6 4.2334 0.0871 -0.0005 6 6 3.6137 -1.1473 -0.0006 7 6 2.2166 -1.2045 -0.0005 8 6 1.5079 -2.5055 -0.0017 9 8 0.2983 -2.5387 0.1097 10 7 2.2048 -3.6524 -0.1262 11 6 1.5040 -4.9389 -0.1279 12 6 2.5198 -6.0728 -0.2807 13 6 1.7879 -7.4164 -0.2818 14 7 2.7631 -8.5050 -0.4292 15 6 3.6421 -8.5869 0.7450 16 6 2.0883 -9.7871 -0.6719 17 6 3.1085 -10.8264 -1.0595 18 8 4.2824 -10.5284 -1.1265 19 7 2.7166 -12.0868 -1.3317 20 6 3.6448 -13.0323 -1.6839 21 1 4.6900 -12.7673 -1.7427 22 6 3.2408 -14.3319 -1.9640 23 7 1.9690 -14.6549 -1.8909 24 14 4.5055 -15.6204 -2.4431 25 1 5.4906 -15.7801 -1.3434 26 1 3.8233 -16.9162 -2.6893 27 1 5.2082 -15.1890 -3.6782 28 1 -0.3633 -0.1137 1.0214 29 1 -0.3633 0.9413 -0.4122 30 1 -0.3633 -0.8277 -0.6091 31 1 1.6691 2.1263 0.0006 32 1 5.3121 0.1416 -0.0014 33 1 4.1995 -2.0547 -0.0010 34 1 3.1703 -3.6259 -0.2154 35 1 0.9639 -5.0595 0.8112 36 1 0.7991 -4.9676 -0.9587 37 1 3.0602 -5.9522 -1.2195 38 1 3.2243 -6.0440 0.5504 39 1 1.2477 -7.5366 0.6573 40 1 1.0830 -7.4455 -1.1128 41 1 3.0422 -8.7732 1.6358 42 1 4.3541 -9.4011 0.6100 43 1 4.1822 -7.6471 0.8608 44 1 1.5733 -10.1040 0.2350 45 1 1.3646 -9.6697 -1.4785 46 1 1.7778 -12.3250 -1.2785 47 1 1.6870 -15.5620 -2.0868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265839750.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:40 Heat of formation + Delta-G solvation = -56.244748 kcal Electronic energy + Delta-G solvation = -27037.167330 eV Core-core repulsion = 23025.993302 eV Total energy + Delta-G solvation = -4011.174027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.78850 -40.39801 -40.09323 -38.27749 -36.44249 -35.81105 -34.42578 -33.61305 -33.25573 -32.13448 -29.38815 -28.51633 -27.55244 -26.63331 -25.52939 -24.02849 -22.99849 -22.20647 -21.51904 -20.95820 -19.84098 -19.06630 -17.96453 -17.71421 -17.03319 -16.74350 -16.61347 -16.50975 -16.34789 -16.21946 -16.02765 -15.81698 -15.31538 -15.09712 -15.00495 -14.62449 -14.52652 -14.32318 -13.74147 -13.66876 -13.47621 -13.46542 -13.23146 -13.00968 -12.80683 -12.72036 -12.52845 -12.49773 -12.39560 -12.31498 -12.11710 -11.64160 -11.43612 -11.31848 -10.93622 -10.39185 -10.26093 -10.17629 -9.98443 -9.92913 -9.18541 -8.44915 -5.93593 -0.35546 0.06253 1.40684 1.42505 1.53273 1.78529 1.94778 2.07739 2.29947 2.79048 2.81165 3.22051 3.43925 3.46435 3.50476 3.74699 3.81288 3.95253 3.97205 4.04343 4.14111 4.32556 4.40088 4.42934 4.50076 4.56158 4.59853 4.61797 4.64708 4.73130 4.76204 4.77515 4.81410 4.82940 5.06799 5.08993 5.19082 5.24614 5.34373 5.42421 5.43494 5.61808 5.89856 6.08715 6.24535 6.39162 6.62612 6.89093 7.05182 7.14725 7.58728 8.14574 8.72191 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.032516 B = 0.001516 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.904393 B =18465.875355 C =19047.380144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C 0.088 3.912 4 N -0.488 5.488 5 C 0.081 3.919 6 C -0.129 4.129 7 C -0.112 4.112 8 C 0.554 3.446 9 O -0.558 6.558 10 N -0.709 5.709 11 C 0.128 3.872 12 C -0.115 4.115 13 C 0.057 3.943 14 N -0.537 5.537 15 C 0.024 3.976 16 C 0.057 3.943 17 C 0.441 3.559 18 O -0.614 6.614 19 N -0.576 5.576 20 C -0.333 4.333 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.182 0.818 32 H 0.189 0.811 33 H 0.168 0.832 34 H 0.414 0.586 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.027 0.973 42 H 0.053 0.947 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.109 0.891 46 H 0.395 0.605 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.136 28.291 5.532 28.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.069 4.069 4 N -0.197 5.197 5 C -0.074 4.074 6 C -0.149 4.149 7 C -0.123 4.123 8 C 0.341 3.659 9 O -0.437 6.437 10 N -0.362 5.362 11 C 0.004 3.996 12 C -0.153 4.153 13 C -0.071 4.071 14 N -0.261 5.261 15 C -0.123 4.123 16 C -0.075 4.075 17 C 0.228 3.772 18 O -0.500 6.500 19 N -0.213 5.213 20 C -0.463 4.463 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.198 1.198 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.199 0.801 32 H 0.206 0.794 33 H 0.186 0.814 34 H 0.252 0.748 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.045 0.955 42 H 0.071 0.929 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.127 0.873 46 H 0.229 0.771 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.582 29.131 5.124 29.621 hybrid contribution -0.478 -2.100 0.413 2.193 sum -2.059 27.032 5.537 27.670 Atomic orbital electron populations 1.20911 0.88870 1.03789 1.03296 1.21298 0.98772 0.92844 0.96367 1.23083 0.89710 0.98036 0.96058 1.67605 1.08818 1.32917 1.10383 1.23252 1.01958 0.86843 0.95393 1.22645 0.93033 1.01494 0.97708 1.20309 0.94829 0.93236 1.03877 1.18400 0.86685 0.84334 0.76462 1.90744 1.14874 1.87543 1.50551 1.45818 1.11790 1.05319 1.73258 1.21262 0.94961 0.81008 1.02373 1.21637 0.97946 0.91754 1.03976 1.22088 0.93583 0.89808 1.01580 1.61511 1.21035 1.03121 1.40469 1.22470 0.97048 1.03259 0.89570 1.21744 0.94571 0.88940 1.02203 1.20795 0.90177 0.83553 0.82632 1.90457 1.20480 1.80793 1.58252 1.41944 1.10200 1.08206 1.60959 1.19628 0.91309 0.90307 1.45038 0.90247 1.26025 0.98797 0.99555 0.96901 1.69669 1.15782 1.21472 1.49287 0.84993 0.77673 0.76934 0.78761 1.19703 1.19602 1.19760 0.90824 0.89635 0.90709 0.80095 0.79413 0.81413 0.74802 0.91418 0.91486 0.90349 0.90212 0.93594 0.89793 0.95460 0.92868 0.89647 0.91619 0.87297 0.77083 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 8.84 71.24 0.63 -1.03 16 2 C -0.09 -1.41 5.93 -19.50 -0.12 -1.52 16 3 C 0.09 1.22 10.83 84.68 0.92 2.14 16 4 N -0.49 -7.57 10.34 -196.01 -2.03 -9.59 16 5 C 0.08 0.92 11.17 84.67 0.95 1.86 16 6 C -0.13 -1.34 9.60 22.63 0.22 -1.12 16 7 C -0.11 -1.74 5.91 -19.88 -0.12 -1.86 16 8 C 0.55 10.26 7.74 86.88 0.67 10.93 16 9 O -0.56 -13.89 13.53 -3.78 -0.05 -13.94 16 10 N -0.71 -9.74 5.51 -465.67 -2.57 -12.30 16 11 C 0.13 1.94 5.67 86.38 0.49 2.43 16 12 C -0.12 -1.80 5.25 30.60 0.16 -1.64 16 13 C 0.06 1.17 4.96 86.30 0.43 1.60 16 14 N -0.54 -16.01 4.50 -927.02 -4.17 -20.18 16 15 C 0.02 0.72 8.96 127.69 1.14 1.86 16 16 C 0.06 1.90 5.45 85.56 0.47 2.36 16 17 C 0.44 20.65 7.47 87.66 0.66 21.30 16 18 O -0.61 -33.15 13.91 -3.08 -0.04 -33.20 16 19 N -0.58 -29.31 5.29 -306.99 -1.62 -30.93 16 20 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 23 N -0.92 -49.53 13.05 21.66 0.28 -49.25 16 24 Si 0.99 42.68 29.55 68.60 2.03 44.70 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 0.83 8.05 -2.39 -0.02 0.81 16 30 H 0.07 1.46 5.95 -2.39 -0.01 1.44 16 31 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.19 0.96 8.06 -2.91 -0.02 0.93 16 33 H 0.17 0.64 6.58 -2.91 -0.02 0.62 16 34 H 0.41 3.42 6.65 -92.71 -0.62 2.81 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.14 6.55 -2.39 -0.02 1.13 16 39 H 0.05 0.85 8.12 -2.39 -0.02 0.83 16 40 H 0.08 1.61 7.93 -2.39 -0.02 1.59 16 41 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.05 2.05 5.82 -2.39 -0.01 2.03 16 43 H 0.08 2.03 6.47 -2.39 -0.02 2.01 16 44 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 45 H 0.11 3.21 7.93 -2.39 -0.02 3.19 16 46 H 0.40 19.16 7.90 -92.71 -0.73 18.42 16 47 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -74.30 388.36 -0.73 -75.03 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.34 Total: 30.57 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: 7.77 Total: 19.09 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -10.10 Total: -122.25 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -0.09 Total: -47.14 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -74.30 -0.73 -75.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265839750.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.788 kcal (2) G-P(sol) polarization free energy of solvation -74.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds