Wall clock time and date at job start Tue Mar 31 2020 19:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38224 * 120.42070 * 2 1 4 4 N 1.31855 * 120.76539 * 179.72908 * 3 2 1 5 5 C 1.31886 * 121.72176 * 0.58520 * 4 3 2 6 6 C 1.38179 * 120.76799 * 359.68222 * 5 4 3 7 7 C 1.38630 * 120.42049 * 180.28399 * 2 1 3 8 8 C 1.50702 * 120.78722 * 359.95311 * 7 2 1 9 9 C 1.50701 * 109.47311 * 85.00348 * 8 7 2 10 10 O 1.21281 * 119.99473 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00208 * 180.02562 * 9 8 7 12 12 C 1.46492 * 119.99915 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47756 * 34.99280 * 12 11 9 14 14 C 1.53000 * 109.47280 * 274.99211 * 12 11 9 15 15 C 1.53001 * 109.47040 * 154.99566 * 12 11 9 16 16 N 1.46900 * 109.47414 * 304.99460 * 15 12 11 17 17 C 1.46899 * 111.00135 * 179.97438 * 16 15 12 18 18 C 1.50707 * 109.46937 * 180.02562 * 17 16 15 19 19 O 1.21297 * 119.99705 * 0.02562 * 18 17 16 20 20 N 1.34772 * 119.99858 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99852 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99667 * 359.97438 * 21 20 18 23 23 C 1.38943 * 119.99978 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00269 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 120.00088 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46539 * 90.00250 * 25 23 21 27 27 H 1.48500 * 109.47431 * 210.00326 * 25 23 21 28 28 H 1.48498 * 109.47211 * 330.00506 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.71769 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.71869 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.71850 * 1 2 3 32 32 H 1.08005 * 119.61789 * 0.03134 * 3 2 1 33 33 H 1.07997 * 119.61697 * 179.70405 * 5 4 3 34 34 H 1.08004 * 120.42114 * 180.02562 * 6 5 4 35 35 H 1.09003 * 109.47237 * 205.00216 * 8 7 2 36 36 H 1.08998 * 109.47123 * 324.99942 * 8 7 2 37 37 H 0.97003 * 119.99602 * 359.97438 * 11 9 8 38 38 H 1.09004 * 109.47288 * 300.00684 * 14 12 11 39 39 H 1.09006 * 109.46875 * 59.99926 * 14 12 11 40 40 H 1.08999 * 109.47496 * 179.97438 * 14 12 11 41 41 H 1.09003 * 109.47482 * 65.00140 * 15 12 11 42 42 H 1.09004 * 109.47011 * 184.99977 * 15 12 11 43 43 H 1.00896 * 110.99995 * 303.96200 * 16 15 12 44 44 H 1.08993 * 109.47476 * 300.00018 * 17 16 15 45 45 H 1.09000 * 109.46710 * 60.00789 * 17 16 15 46 46 H 0.97001 * 120.00343 * 359.97438 * 20 18 17 47 47 H 0.96996 * 120.00466 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1999 0.0054 5 6 4.2257 0.0823 -0.0006 6 6 3.5948 -1.1471 -0.0061 7 6 2.2090 -1.1954 -0.0059 8 6 1.4831 -2.5161 -0.0114 9 6 1.1317 -2.8904 -1.4283 10 8 1.4399 -2.1566 -2.3434 11 7 0.4741 -4.0399 -1.6783 12 6 0.1330 -4.4039 -3.0557 13 1 0.9239 -4.0687 -3.7267 14 6 -1.1861 -3.7355 -3.4482 15 6 -0.0144 -5.9232 -3.1601 16 7 1.2107 -6.5690 -2.6700 17 6 1.1049 -8.0317 -2.7548 18 6 2.3770 -8.6577 -2.2439 19 8 3.2824 -7.9545 -1.8477 20 7 2.5086 -9.9989 -2.2273 21 6 3.6657 -10.5685 -1.7621 22 1 4.4718 -9.9423 -1.4093 23 6 3.8011 -11.9512 -1.7445 24 7 4.9100 -12.4972 -1.2980 25 14 2.4064 -13.0342 -2.3540 26 1 2.5739 -13.2850 -3.8081 27 1 2.4275 -14.3267 -1.6231 28 1 1.1093 -12.3518 -2.1156 29 1 -0.3633 -0.0051 1.0277 30 1 -0.3633 -0.8875 -0.5182 31 1 -0.3633 0.8925 -0.5095 32 1 1.6675 2.1277 0.0005 33 1 5.3046 0.1285 -0.0007 34 1 4.1738 -2.0588 -0.0106 35 1 2.1247 -3.2851 0.4190 36 1 0.5708 -2.4318 0.5791 37 1 0.2273 -4.6266 -0.9463 38 1 -1.9770 -4.0707 -2.7772 39 1 -1.0811 -2.6530 -3.3738 40 1 -1.4396 -4.0059 -4.4732 41 1 -0.8626 -6.2483 -2.5575 42 1 -0.1803 -6.2015 -4.2009 43 1 2.0206 -6.2349 -3.1705 44 1 0.2647 -8.3710 -2.1491 45 1 0.9466 -8.3249 -3.7926 46 1 1.7844 -10.5613 -2.5439 47 1 5.0047 -13.4624 -1.2861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268645554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:15 Heat of formation + Delta-G solvation = -70.144594 kcal Electronic energy + Delta-G solvation = -27913.566571 eV Core-core repulsion = 23901.789801 eV Total energy + Delta-G solvation = -4011.776770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.56857 -40.51637 -40.20136 -37.82674 -36.06383 -35.33044 -35.09003 -33.73286 -33.38336 -32.15677 -29.54298 -29.05586 -27.96768 -26.61503 -24.58840 -23.95807 -23.05248 -22.02090 -21.30966 -21.23450 -20.24871 -18.25018 -17.97368 -17.73811 -17.54386 -17.18405 -16.70860 -16.34177 -16.04787 -15.98437 -15.66842 -15.42452 -15.16497 -14.94163 -14.77483 -14.46824 -14.31853 -14.27544 -14.05280 -13.68992 -13.63548 -13.58962 -13.20884 -13.11939 -12.99056 -12.90123 -12.79612 -12.66026 -12.40636 -12.26315 -11.97566 -11.82370 -11.50394 -11.05287 -10.44763 -10.42781 -10.38296 -10.24250 -9.97464 -9.80518 -9.34408 -8.40688 -6.01799 0.19834 0.25605 1.30621 1.36465 1.45503 1.69637 1.97766 2.23741 2.29254 2.72351 2.88191 3.16078 3.40603 3.50880 3.61465 3.79814 3.83620 4.01802 4.03469 4.08246 4.14655 4.24866 4.39188 4.43347 4.49400 4.50942 4.57295 4.59147 4.67474 4.74170 4.78650 4.79452 4.82164 4.89705 5.06421 5.09874 5.20539 5.29912 5.39668 5.53013 5.61501 5.80802 5.90253 6.03817 6.29830 6.60378 6.65955 6.89268 7.02177 7.34487 7.41111 7.98258 8.76998 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016146 B = 0.002181 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.801766 B =12834.807765 C =14170.651408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.128 4.128 3 C 0.082 3.918 4 N -0.510 5.510 5 C 0.076 3.924 6 C -0.170 4.170 7 C -0.034 4.034 8 C -0.103 4.103 9 C 0.518 3.482 10 O -0.583 6.583 11 N -0.699 5.699 12 C 0.145 3.855 13 H 0.057 0.943 14 C -0.151 4.151 15 C 0.055 3.945 16 N -0.682 5.682 17 C 0.063 3.937 18 C 0.447 3.553 19 O -0.615 6.615 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.053 0.947 23 C -0.018 4.018 24 N -0.936 5.936 25 Si 0.966 3.034 26 H -0.259 1.259 27 H -0.277 1.277 28 H -0.227 1.227 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.174 0.826 33 H 0.170 0.830 34 H 0.140 0.860 35 H 0.117 0.883 36 H 0.136 0.864 37 H 0.415 0.585 38 H 0.077 0.923 39 H 0.044 0.956 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.339 0.661 44 H 0.121 0.879 45 H 0.076 0.924 46 H 0.390 0.610 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.110 18.918 -0.132 27.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.129 4.129 3 C -0.075 4.075 4 N -0.219 5.219 5 C -0.080 4.080 6 C -0.190 4.190 7 C -0.043 4.043 8 C -0.143 4.143 9 C 0.305 3.695 10 O -0.463 6.463 11 N -0.351 5.351 12 C 0.040 3.960 13 H 0.075 0.925 14 C -0.210 4.210 15 C -0.074 4.074 16 N -0.313 5.313 17 C -0.069 4.069 18 C 0.235 3.765 19 O -0.500 6.500 20 N -0.233 5.233 21 C -0.457 4.457 22 H 0.072 0.928 23 C -0.216 4.216 24 N -0.577 5.577 25 Si 0.786 3.214 26 H -0.183 1.183 27 H -0.202 1.202 28 H -0.150 1.150 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.191 0.809 33 H 0.187 0.813 34 H 0.158 0.842 35 H 0.135 0.865 36 H 0.154 0.846 37 H 0.251 0.749 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.097 0.903 41 H 0.121 0.879 42 H 0.079 0.921 43 H 0.157 0.843 44 H 0.139 0.861 45 H 0.094 0.906 46 H 0.226 0.774 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.922 20.532 0.189 27.922 hybrid contribution 0.111 -2.147 -0.852 2.313 sum -18.811 18.385 -0.663 26.312 Atomic orbital electron populations 1.20778 0.88396 1.03576 1.03645 1.21047 0.98941 0.93149 0.99808 1.23038 0.89775 0.98509 0.96190 1.67644 1.09337 1.32074 1.12864 1.22985 1.01245 0.87589 0.96194 1.22265 0.95149 1.00229 1.01309 1.19859 0.93637 0.94852 0.95947 1.20753 1.03809 0.95094 0.94614 1.20643 0.76724 0.81083 0.91073 1.90707 1.55254 1.52547 1.47834 1.45806 1.57699 1.21789 1.09757 1.20939 0.97671 0.93997 0.83413 0.92488 1.22045 0.95954 1.00096 1.02889 1.22387 0.92897 0.91742 1.00368 1.60060 1.05481 1.03604 1.62203 1.21645 0.94764 0.88988 1.01520 1.21082 0.90730 0.81919 0.82753 1.90557 1.44634 1.62256 1.52511 1.42037 1.15965 1.06398 1.58934 1.18987 0.94409 0.91498 1.40811 0.92842 1.26154 1.00573 0.97881 0.97009 1.69810 1.28386 1.12531 1.46939 0.85348 0.78784 0.78103 0.79161 1.18330 1.20208 1.15040 0.88690 0.91862 0.90148 0.80858 0.81317 0.84183 0.86456 0.84583 0.74859 0.90366 0.93694 0.90334 0.87919 0.92102 0.84349 0.86118 0.90584 0.77431 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.30 71.24 0.66 -0.71 16 2 C -0.13 -2.50 5.90 -19.77 -0.12 -2.62 16 3 C 0.08 1.72 10.86 84.69 0.92 2.64 16 4 N -0.51 -12.82 10.36 -195.84 -2.03 -14.85 16 5 C 0.08 1.77 11.18 84.67 0.95 2.72 16 6 C -0.17 -3.90 9.80 22.36 0.22 -3.69 16 7 C -0.03 -0.74 4.41 -19.67 -0.09 -0.83 16 8 C -0.10 -1.76 5.19 29.10 0.15 -1.61 16 9 C 0.52 11.56 7.11 87.66 0.62 12.18 16 10 O -0.58 -18.08 15.70 -3.03 -0.05 -18.12 16 11 N -0.70 -12.60 4.80 -442.54 -2.12 -14.72 16 12 C 0.15 2.56 2.81 44.99 0.13 2.69 16 13 H 0.06 1.36 7.58 -2.39 -0.02 1.34 16 14 C -0.15 -2.03 9.48 71.98 0.68 -1.35 16 15 C 0.06 0.85 5.24 86.30 0.45 1.31 16 16 N -0.68 -16.91 5.85 -517.92 -3.03 -19.94 16 17 C 0.06 1.66 6.17 85.56 0.53 2.18 16 18 C 0.45 19.00 7.82 87.66 0.69 19.68 16 19 O -0.62 -32.86 15.78 -3.08 -0.05 -32.91 16 20 N -0.59 -26.67 5.09 -306.98 -1.56 -28.24 16 21 C -0.33 -18.82 10.16 84.04 0.85 -17.96 16 22 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 23 C -0.02 -0.97 5.50 84.92 0.47 -0.50 16 24 N -0.94 -55.91 13.96 21.66 0.30 -55.61 16 25 Si 0.97 37.60 27.74 68.60 1.90 39.50 16 26 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 27 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 28 H -0.23 -7.24 6.52 99.48 0.65 -6.59 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.87 6.35 -2.39 -0.02 0.86 16 31 H 0.08 0.88 8.09 -2.38 -0.02 0.86 16 32 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 34 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.12 1.86 8.07 -2.39 -0.02 1.84 16 36 H 0.14 1.42 7.11 -2.39 -0.02 1.41 16 37 H 0.41 6.01 8.60 -92.71 -0.80 5.21 16 38 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.04 0.78 8.14 -2.38 -0.02 0.77 16 40 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.34 10.10 8.43 -89.70 -0.76 9.34 16 44 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.39 14.31 5.76 -92.71 -0.53 13.78 16 47 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -85.17 395.95 -0.65 -85.83 By element: Atomic # 1 Polarization: 46.05 SS G_CDS: -1.13 Total: 44.92 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 7.12 Total: 14.15 kcal Atomic # 7 Polarization: -124.91 SS G_CDS: -8.44 Total: -133.35 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -0.10 Total: -51.04 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 1.90 Total: 39.50 kcal Total: -85.17 -0.65 -85.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268645554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.682 kcal (2) G-P(sol) polarization free energy of solvation -85.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds