Wall clock time and date at job start Tue Mar 31 2020 19:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38165 * 120.50170 * 2 1 4 4 N 1.31798 * 120.89456 * 179.97438 * 3 2 1 5 5 C 1.31827 * 122.05401 * 0.02562 * 4 3 2 6 6 C 1.38136 * 120.89350 * 0.02562 * 5 4 3 7 7 C 1.39797 * 120.49664 * 179.97438 * 2 1 3 8 8 C 1.48148 * 120.92426 * 359.97438 * 7 2 1 9 9 O 1.21518 * 119.99895 * 306.95668 * 8 7 2 10 10 N 1.34774 * 119.99843 * 126.95247 * 8 7 2 11 11 C 1.46496 * 120.00401 * 4.20743 * 10 8 7 12 12 C 1.46499 * 119.99911 * 184.20011 * 10 8 7 13 13 H 1.09005 * 109.47096 * 0.02562 * 12 10 8 14 14 C 1.53000 * 109.47480 * 240.00373 * 12 10 8 15 15 C 1.53007 * 109.46984 * 120.00057 * 12 10 8 16 16 N 1.46895 * 109.47062 * 305.00132 * 15 12 10 17 17 C 1.46904 * 111.00034 * 179.97438 * 16 15 12 18 18 C 1.50699 * 109.47404 * 180.02562 * 17 16 15 19 19 O 1.21292 * 119.99573 * 359.97438 * 18 17 16 20 20 N 1.34772 * 119.99922 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99773 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00085 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99758 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99947 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47495 * 89.99588 * 25 23 21 27 27 H 1.48506 * 109.47013 * 209.99356 * 25 23 21 28 28 H 1.48498 * 109.47067 * 329.99234 * 25 23 21 29 29 H 1.09005 * 109.47126 * 85.29665 * 1 2 3 30 30 H 1.08994 * 109.47411 * 205.30092 * 1 2 3 31 31 H 1.09006 * 109.46611 * 325.30571 * 1 2 3 32 32 H 1.07999 * 119.55656 * 359.97438 * 3 2 1 33 33 H 1.07995 * 119.55834 * 179.71829 * 5 4 3 34 34 H 1.07989 * 120.49764 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47573 * 84.55669 * 11 10 8 36 36 H 1.08995 * 109.47590 * 204.56455 * 11 10 8 37 37 H 1.08998 * 109.46867 * 324.56228 * 11 10 8 38 38 H 1.09002 * 109.47100 * 179.97438 * 14 12 10 39 39 H 1.09004 * 109.46798 * 299.99972 * 14 12 10 40 40 H 1.08993 * 109.46956 * 60.00321 * 14 12 10 41 41 H 1.09000 * 109.46549 * 65.00027 * 15 12 10 42 42 H 1.09003 * 109.46834 * 185.00214 * 15 12 10 43 43 H 1.00901 * 111.00113 * 56.04519 * 16 15 12 44 44 H 1.09003 * 109.46755 * 300.00249 * 17 16 15 45 45 H 1.08998 * 109.46959 * 59.99751 * 17 16 15 46 46 H 0.97004 * 120.00432 * 359.97438 * 20 18 17 47 47 H 0.97008 * 119.99883 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1995 0.0005 5 6 4.2335 0.0870 0.0005 6 6 3.6137 -1.1475 -0.0005 7 6 2.2164 -1.2046 0.0005 8 6 1.5078 -2.5055 0.0017 9 8 0.6618 -2.7359 0.8431 10 7 1.8012 -3.4336 -0.9305 11 6 2.8840 -3.1936 -1.8877 12 6 1.0375 -4.6825 -0.9866 13 1 0.2801 -4.6807 -0.2027 14 6 1.9825 -5.8680 -0.7806 15 6 0.3575 -4.8035 -2.3519 16 7 -0.4574 -3.6069 -2.6009 17 6 -1.1265 -3.6879 -3.9062 18 6 -1.9506 -2.4455 -4.1262 19 8 -1.9783 -1.5782 -3.2787 20 7 -2.6569 -2.2982 -5.2646 21 6 -3.4070 -1.1682 -5.4645 22 1 -3.4323 -0.3963 -4.7096 23 6 -4.1356 -1.0166 -6.6379 24 7 -4.1052 -1.9560 -7.5562 25 14 -5.1572 0.5234 -6.9106 26 1 -4.3282 1.5544 -7.5851 27 1 -6.3290 0.1957 -7.7619 28 1 -5.6266 1.0442 -5.6015 29 1 -0.3634 0.0843 -1.0242 30 1 -0.3634 -0.9290 0.4392 31 1 -0.3633 0.8450 0.5850 32 1 1.6692 2.1263 -0.0004 33 1 5.3121 0.1414 -0.0037 34 1 4.1994 -2.0548 -0.0009 35 1 3.8350 -3.4832 -1.4407 36 1 2.7109 -3.7835 -2.7877 37 1 2.9118 -2.1352 -2.1469 38 1 1.4142 -6.7972 -0.8219 39 1 2.7397 -5.8695 -1.5648 40 1 2.4668 -5.7817 0.1920 41 1 1.1164 -4.8944 -3.1290 42 1 -0.2812 -5.6868 -2.3626 43 1 0.1004 -2.7689 -2.5322 44 1 -0.3775 -3.7709 -4.6938 45 1 -1.7753 -4.5634 -3.9282 46 1 -2.6345 -2.9917 -5.9425 47 1 -4.6136 -1.8500 -8.3756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270955977.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:52 Heat of formation + Delta-G solvation = -28.042785 kcal Electronic energy + Delta-G solvation = -29328.844525 eV Core-core repulsion = 25318.893427 eV Total energy + Delta-G solvation = -4009.951098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.03192 -39.50308 -38.27742 -36.98428 -34.75095 -33.85727 -33.58404 -32.64704 -31.29938 -31.13470 -27.63017 -27.53217 -27.14589 -25.17932 -24.73158 -23.27100 -22.58685 -21.40538 -19.57946 -19.15839 -17.97088 -17.88069 -16.99982 -16.63425 -16.35507 -15.69173 -15.52254 -15.14147 -14.92586 -14.51961 -14.42891 -14.25242 -13.90457 -13.78185 -13.56795 -13.47163 -13.39621 -13.10019 -12.78813 -12.62663 -12.61380 -12.37702 -12.06857 -11.92343 -11.66366 -11.65217 -11.62263 -11.43910 -11.10837 -10.99133 -10.40166 -10.35860 -10.22841 -9.87772 -9.51726 -9.46612 -9.05384 -8.92921 -8.44264 -8.07044 -7.96762 -6.42815 -3.83500 0.72339 0.91438 2.49710 2.76855 3.17006 3.25874 3.31951 3.59399 3.89470 4.01466 4.15541 4.24520 4.31000 4.58983 4.69672 4.79234 4.83206 4.84700 4.90953 5.05344 5.12792 5.17315 5.24076 5.26148 5.34337 5.39669 5.46207 5.49108 5.55756 5.61821 5.68751 5.74980 5.81381 5.88561 5.94613 5.97258 6.11560 6.24462 6.32219 6.39124 6.53525 7.12148 7.17580 7.54199 7.61292 7.74394 7.97047 8.05207 8.60217 9.16927 9.53152 10.04587 10.74962 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011290 B = 0.003253 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.446201 B = 8605.286006 C =10302.903366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 C 0.096 3.904 4 N -0.470 5.470 5 C 0.083 3.917 6 C -0.142 4.142 7 C -0.086 4.086 8 C 0.570 3.430 9 O -0.515 6.515 10 N -0.603 5.603 11 C 0.071 3.929 12 C 0.137 3.863 13 H 0.112 0.888 14 C -0.158 4.158 15 C 0.048 3.952 16 N -0.663 5.663 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.581 6.581 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.162 0.838 33 H 0.158 0.842 34 H 0.138 0.862 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.029 0.971 42 H 0.085 0.915 43 H 0.347 0.653 44 H 0.041 0.959 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.698 -5.376 10.688 21.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.077 4.077 3 C -0.061 4.061 4 N -0.179 5.179 5 C -0.074 4.074 6 C -0.162 4.162 7 C -0.097 4.097 8 C 0.357 3.643 9 O -0.390 6.390 10 N -0.337 5.337 11 C -0.072 4.072 12 C 0.034 3.966 13 H 0.130 0.870 14 C -0.217 4.217 15 C -0.082 4.082 16 N -0.296 5.296 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.465 6.465 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.179 0.821 33 H 0.176 0.824 34 H 0.156 0.844 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.103 0.897 43 H 0.167 0.833 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.008 -4.376 11.867 21.196 hybrid contribution -0.064 -0.430 -1.513 1.574 sum 16.944 -4.806 10.354 20.431 Atomic orbital electron populations 1.21057 0.88644 1.04917 1.04410 1.21123 0.98586 0.92294 0.95747 1.22727 0.89628 0.97559 0.96202 1.67535 1.08342 1.31739 1.10251 1.22646 1.00348 0.87286 0.97096 1.22278 0.93506 1.00148 1.00299 1.20179 0.94004 0.93829 1.01686 1.18172 0.81909 0.83044 0.81170 1.90776 1.32284 1.78836 1.37107 1.47764 1.35089 1.18339 1.32458 1.21917 0.89541 1.02700 0.93009 1.21242 0.93751 0.82282 0.99303 0.86979 1.22095 0.99711 0.97671 1.02175 1.22358 0.95467 0.95176 0.95206 1.60006 1.34314 1.04141 1.31159 1.21689 0.97628 0.99091 0.89834 1.19784 0.84966 0.88756 0.83912 1.90516 1.67554 1.43969 1.44437 1.41857 1.41592 1.20075 1.16506 1.19697 1.22454 0.97450 1.03215 0.87934 1.25255 0.98276 0.98904 0.95480 1.69613 1.42548 1.33634 1.08573 0.85867 0.79000 0.80983 0.78514 1.20433 1.20911 1.19366 0.89102 0.89038 0.90905 0.82053 0.82435 0.84431 0.92240 0.90593 0.90952 0.91001 0.92322 0.92054 0.95294 0.89692 0.83328 0.94136 0.89535 0.77513 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.74 36.01 0.35 -1.56 16 2 C -0.07 -0.99 5.93 -104.07 -0.62 -1.60 16 3 C 0.10 1.15 10.88 -17.59 -0.19 0.96 16 4 N -0.47 -5.62 10.33 -13.31 -0.14 -5.75 16 5 C 0.08 0.79 11.17 -17.59 -0.20 0.60 16 6 C -0.14 -1.35 8.06 -39.02 -0.31 -1.67 16 7 C -0.09 -1.07 4.76 -104.65 -0.50 -1.57 16 8 C 0.57 7.86 6.67 -12.19 -0.08 7.78 16 9 O -0.51 -8.86 14.47 5.35 0.08 -8.79 16 10 N -0.60 -6.70 1.83 -174.93 -0.32 -7.02 16 11 C 0.07 0.58 8.18 59.84 0.49 1.07 16 12 C 0.14 1.50 2.94 -67.93 -0.20 1.30 16 13 H 0.11 1.53 6.91 -51.93 -0.36 1.17 16 14 C -0.16 -1.22 9.19 37.16 0.34 -0.88 16 15 C 0.05 0.56 5.00 -3.82 -0.02 0.55 16 16 N -0.66 -10.79 6.12 -115.05 -0.70 -11.50 16 17 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 18 C 0.44 10.36 7.82 -10.99 -0.09 10.27 16 19 O -0.58 -15.61 15.78 5.55 0.09 -15.53 16 20 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 21 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 25 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.09 1.52 5.66 -51.93 -0.29 1.22 16 31 H 0.07 0.88 8.12 -51.93 -0.42 0.45 16 32 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.14 0.94 6.81 -52.49 -0.36 0.58 16 35 H 0.06 0.35 7.28 -51.93 -0.38 -0.03 16 36 H 0.08 0.57 6.54 -51.93 -0.34 0.23 16 37 H 0.07 0.65 6.47 -51.93 -0.34 0.31 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.03 0.30 6.86 -51.93 -0.36 -0.06 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.35 6.03 7.56 -39.29 -0.30 5.73 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 47 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 LS Contribution 387.63 15.07 5.84 5.84 Total: -1.00 -33.85 387.63 -7.56 -41.41 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -6.75 Total: 15.18 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -1.29 Total: 8.16 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: -0.50 Total: -62.29 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: 0.16 Total: -24.31 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.85 -7.56 -41.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270955977.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.365 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds