Wall clock time and date at job start Tue Mar 31 2020 19:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38165 * 120.50170 * 2 1 4 4 N 1.31798 * 120.89456 * 179.97438 * 3 2 1 5 5 C 1.31827 * 122.05401 * 0.02562 * 4 3 2 6 6 C 1.38136 * 120.89350 * 0.02562 * 5 4 3 7 7 C 1.39797 * 120.49664 * 179.97438 * 2 1 3 8 8 C 1.48148 * 120.92426 * 359.97438 * 7 2 1 9 9 O 1.21518 * 119.99895 * 306.95668 * 8 7 2 10 10 N 1.34774 * 119.99843 * 126.95247 * 8 7 2 11 11 C 1.46496 * 120.00401 * 4.20743 * 10 8 7 12 12 C 1.46499 * 119.99911 * 184.20011 * 10 8 7 13 13 H 1.09005 * 109.47096 * 0.02562 * 12 10 8 14 14 C 1.53000 * 109.47480 * 240.00373 * 12 10 8 15 15 C 1.53007 * 109.46984 * 120.00057 * 12 10 8 16 16 N 1.46895 * 109.47062 * 305.00132 * 15 12 10 17 17 C 1.46904 * 111.00034 * 179.97438 * 16 15 12 18 18 C 1.50699 * 109.47404 * 180.02562 * 17 16 15 19 19 O 1.21292 * 119.99573 * 359.97438 * 18 17 16 20 20 N 1.34772 * 119.99922 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99773 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00085 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99758 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99947 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47495 * 89.99588 * 25 23 21 27 27 H 1.48506 * 109.47013 * 209.99356 * 25 23 21 28 28 H 1.48498 * 109.47067 * 329.99234 * 25 23 21 29 29 H 1.09005 * 109.47126 * 85.29665 * 1 2 3 30 30 H 1.08994 * 109.47411 * 205.30092 * 1 2 3 31 31 H 1.09006 * 109.46611 * 325.30571 * 1 2 3 32 32 H 1.07999 * 119.55656 * 359.97438 * 3 2 1 33 33 H 1.07995 * 119.55834 * 179.71829 * 5 4 3 34 34 H 1.07989 * 120.49764 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47573 * 84.55669 * 11 10 8 36 36 H 1.08995 * 109.47590 * 204.56455 * 11 10 8 37 37 H 1.08998 * 109.46867 * 324.56228 * 11 10 8 38 38 H 1.09002 * 109.47100 * 179.97438 * 14 12 10 39 39 H 1.09004 * 109.46798 * 299.99972 * 14 12 10 40 40 H 1.08993 * 109.46956 * 60.00321 * 14 12 10 41 41 H 1.09000 * 109.46549 * 65.00027 * 15 12 10 42 42 H 1.09003 * 109.46834 * 185.00214 * 15 12 10 43 43 H 1.00901 * 111.00113 * 56.04519 * 16 15 12 44 44 H 1.09003 * 109.46755 * 300.00249 * 17 16 15 45 45 H 1.08998 * 109.46959 * 59.99751 * 17 16 15 46 46 H 0.97004 * 120.00432 * 359.97438 * 20 18 17 47 47 H 0.97008 * 119.99883 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1995 0.0005 5 6 4.2335 0.0870 0.0005 6 6 3.6137 -1.1475 -0.0005 7 6 2.2164 -1.2046 0.0005 8 6 1.5078 -2.5055 0.0017 9 8 0.6618 -2.7359 0.8431 10 7 1.8012 -3.4336 -0.9305 11 6 2.8840 -3.1936 -1.8877 12 6 1.0375 -4.6825 -0.9866 13 1 0.2801 -4.6807 -0.2027 14 6 1.9825 -5.8680 -0.7806 15 6 0.3575 -4.8035 -2.3519 16 7 -0.4574 -3.6069 -2.6009 17 6 -1.1265 -3.6879 -3.9062 18 6 -1.9506 -2.4455 -4.1262 19 8 -1.9783 -1.5782 -3.2787 20 7 -2.6569 -2.2982 -5.2646 21 6 -3.4070 -1.1682 -5.4645 22 1 -3.4323 -0.3963 -4.7096 23 6 -4.1356 -1.0166 -6.6379 24 7 -4.1052 -1.9560 -7.5562 25 14 -5.1572 0.5234 -6.9106 26 1 -4.3282 1.5544 -7.5851 27 1 -6.3290 0.1957 -7.7619 28 1 -5.6266 1.0442 -5.6015 29 1 -0.3634 0.0843 -1.0242 30 1 -0.3634 -0.9290 0.4392 31 1 -0.3633 0.8450 0.5850 32 1 1.6692 2.1263 -0.0004 33 1 5.3121 0.1414 -0.0037 34 1 4.1994 -2.0548 -0.0009 35 1 3.8350 -3.4832 -1.4407 36 1 2.7109 -3.7835 -2.7877 37 1 2.9118 -2.1352 -2.1469 38 1 1.4142 -6.7972 -0.8219 39 1 2.7397 -5.8695 -1.5648 40 1 2.4668 -5.7817 0.1920 41 1 1.1164 -4.8944 -3.1290 42 1 -0.2812 -5.6868 -2.3626 43 1 0.1004 -2.7689 -2.5322 44 1 -0.3775 -3.7709 -4.6938 45 1 -1.7753 -4.5634 -3.9282 46 1 -2.6345 -2.9917 -5.9425 47 1 -4.6136 -1.8500 -8.3756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270955977.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:51 Heat of formation + Delta-G solvation = -52.989949 kcal Electronic energy + Delta-G solvation = -29329.926315 eV Core-core repulsion = 25318.893427 eV Total energy + Delta-G solvation = -4011.032889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.95555 -40.47329 -40.06219 -38.09016 -36.18939 -35.58591 -34.58731 -33.61750 -33.24509 -32.05821 -28.99111 -28.49840 -27.94277 -26.71568 -25.78598 -24.59550 -23.52101 -22.31076 -21.13714 -20.34659 -19.90444 -18.85010 -17.98564 -17.88172 -17.50694 -17.12940 -16.48289 -16.37295 -16.15778 -15.98310 -15.81904 -15.38185 -15.24914 -15.02796 -14.78551 -14.40320 -14.28880 -14.20457 -14.05600 -13.74016 -13.54876 -13.39958 -13.28166 -13.17477 -13.06821 -12.95480 -12.78804 -12.54652 -12.49250 -12.41278 -12.13727 -11.91007 -11.51942 -11.37255 -10.77420 -10.39530 -10.38136 -10.02529 -9.95832 -9.77849 -9.30583 -8.48172 -5.96568 -0.18305 0.06081 1.36255 1.40326 1.49871 1.52923 1.89729 2.03774 2.27702 2.72710 2.88263 3.19154 3.27068 3.46659 3.49942 3.77432 3.78729 3.90397 3.97393 4.12817 4.14827 4.22285 4.32244 4.38120 4.45340 4.51628 4.55087 4.59390 4.66132 4.67764 4.69370 4.75224 4.79880 4.80896 4.86423 5.08140 5.09559 5.24067 5.29055 5.39532 5.52766 5.61379 5.86775 6.08743 6.20435 6.32745 6.59075 6.89547 6.99327 7.11564 7.54778 8.10629 8.69238 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011290 B = 0.003253 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.446201 B = 8605.286006 C =10302.903366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.100 4.100 3 C 0.092 3.908 4 N -0.487 5.487 5 C 0.089 3.911 6 C -0.128 4.128 7 C -0.099 4.099 8 C 0.562 3.438 9 O -0.564 6.564 10 N -0.596 5.596 11 C 0.064 3.936 12 C 0.137 3.863 13 H 0.077 0.923 14 C -0.146 4.146 15 C 0.050 3.950 16 N -0.685 5.685 17 C 0.066 3.934 18 C 0.435 3.565 19 O -0.621 6.621 20 N -0.572 5.572 21 C -0.333 4.333 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.275 1.275 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.174 0.826 33 H 0.197 0.803 34 H 0.172 0.828 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.096 0.904 43 H 0.337 0.663 44 H 0.069 0.931 45 H 0.105 0.895 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.372 -6.565 9.725 23.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.103 4.103 3 C -0.065 4.065 4 N -0.196 5.196 5 C -0.067 4.067 6 C -0.147 4.147 7 C -0.110 4.110 8 C 0.351 3.649 9 O -0.443 6.443 10 N -0.328 5.328 11 C -0.077 4.077 12 C 0.033 3.967 13 H 0.095 0.905 14 C -0.205 4.205 15 C -0.079 4.079 16 N -0.318 5.318 17 C -0.067 4.067 18 C 0.222 3.778 19 O -0.507 6.507 20 N -0.209 5.209 21 C -0.463 4.463 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.200 1.200 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.191 0.809 33 H 0.214 0.786 34 H 0.189 0.811 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.115 0.885 43 H 0.156 0.844 44 H 0.086 0.914 45 H 0.123 0.877 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 19.711 -5.609 10.860 23.193 hybrid contribution -0.818 -0.113 -1.197 1.454 sum 18.893 -5.722 9.663 21.978 Atomic orbital electron populations 1.20829 0.90412 1.04095 1.02515 1.21056 0.97582 0.93518 0.98164 1.22862 0.90032 0.97524 0.96080 1.67610 1.08055 1.33011 1.10918 1.23336 1.01991 0.86540 0.94847 1.22594 0.92067 1.01654 0.98421 1.20279 0.95488 0.92850 1.02389 1.18482 0.81481 0.83807 0.81176 1.90745 1.34451 1.79772 1.39308 1.47860 1.35285 1.17760 1.31935 1.22179 0.89867 1.02610 0.93075 1.21249 0.94006 0.83607 0.97789 0.90507 1.22015 0.99401 0.96226 1.02821 1.22484 0.95846 0.93383 0.96179 1.59989 1.35763 1.05511 1.30531 1.21547 0.97715 0.95952 0.91454 1.20913 0.84246 0.90077 0.82536 1.90498 1.68660 1.46037 1.45543 1.41908 1.42002 1.19678 1.17327 1.19637 1.24671 0.98373 1.03608 0.90539 1.26000 0.98667 1.01702 0.94716 1.69666 1.42796 1.34764 1.08813 0.84965 0.77833 0.77601 0.78182 1.19506 1.19453 1.19975 0.92019 0.91789 0.89310 0.80934 0.78580 0.81067 0.88836 0.89339 0.91815 0.89787 0.90129 0.92250 0.92531 0.88534 0.84408 0.91369 0.87675 0.76970 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.86 9.74 71.24 0.69 -3.16 16 2 C -0.10 -2.78 5.93 -19.50 -0.12 -2.89 16 3 C 0.09 2.21 10.88 84.68 0.92 3.14 16 4 N -0.49 -10.97 10.33 -196.01 -2.03 -13.00 16 5 C 0.09 1.47 11.17 84.67 0.95 2.41 16 6 C -0.13 -2.12 8.06 22.63 0.18 -1.94 16 7 C -0.10 -2.47 4.76 -19.88 -0.09 -2.57 16 8 C 0.56 15.95 6.67 86.88 0.58 16.53 16 9 O -0.56 -20.81 14.47 -3.77 -0.05 -20.87 16 10 N -0.60 -12.68 1.83 -825.66 -1.51 -14.19 16 11 C 0.06 0.87 8.18 127.77 1.04 1.91 16 12 C 0.14 2.84 2.94 44.99 0.13 2.97 16 13 H 0.08 2.18 6.91 -2.38 -0.02 2.16 16 14 C -0.15 -1.83 9.19 71.98 0.66 -1.17 16 15 C 0.05 1.07 5.00 86.31 0.43 1.50 16 16 N -0.69 -22.14 6.12 -517.92 -3.17 -25.31 16 17 C 0.07 2.23 6.17 85.56 0.53 2.76 16 18 C 0.43 20.94 7.82 87.66 0.69 21.62 16 19 O -0.62 -35.06 15.78 -3.07 -0.05 -35.11 16 20 N -0.57 -29.47 5.29 -306.99 -1.62 -31.09 16 21 C -0.33 -19.10 9.68 84.04 0.81 -18.29 16 22 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 24 N -0.92 -49.58 13.05 21.66 0.28 -49.30 16 25 Si 0.99 43.25 29.55 68.60 2.03 45.28 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 29 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 30 H 0.06 2.38 5.66 -2.39 -0.01 2.36 16 31 H 0.09 2.37 8.12 -2.38 -0.02 2.35 16 32 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 33 H 0.20 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.17 1.61 6.81 -2.92 -0.02 1.59 16 35 H 0.09 0.65 7.28 -2.39 -0.02 0.64 16 36 H 0.09 0.99 6.54 -2.39 -0.02 0.98 16 37 H 0.06 1.01 6.47 -2.39 -0.02 0.99 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 0.68 7.67 -2.39 -0.02 0.66 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 0.93 6.86 -2.39 -0.02 0.91 16 42 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.34 11.94 7.56 -89.69 -0.68 11.27 16 44 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 46 H 0.40 19.28 7.90 -92.70 -0.73 18.55 16 47 H 0.28 14.01 8.31 -92.70 -0.77 13.24 16 Total: -1.00 -78.47 387.63 1.36 -77.11 By element: Atomic # 1 Polarization: 44.17 SS G_CDS: -0.40 Total: 43.78 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: 7.88 Total: 22.70 kcal Atomic # 7 Polarization: -124.85 SS G_CDS: -8.05 Total: -132.89 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -0.10 Total: -55.98 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -78.47 1.36 -77.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270955977.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.120 kcal (2) G-P(sol) polarization free energy of solvation -78.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds