Wall clock time and date at job start Tue Mar 31 2020 18:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35315 * 126.13100 * 2 1 4 4 C 1.39867 * 107.92134 * 180.26483 * 3 2 1 5 5 C 1.50704 * 125.89829 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47005 * 94.97208 * 5 4 3 7 7 C 1.47584 * 111.00384 * 266.10877 * 6 5 4 8 8 C 1.52888 * 87.78575 * 221.76533 * 7 6 5 9 9 C 1.47595 * 110.99892 * 170.00021 * 6 5 4 10 10 C 1.52451 * 114.26349 * 271.57640 * 8 7 6 11 11 N 1.46293 * 109.56910 * 272.35434 * 10 8 7 12 12 C 1.46503 * 118.72532 * 164.04191 * 11 10 8 13 13 C 1.53001 * 109.47024 * 90.00030 * 12 11 10 14 14 C 1.50697 * 109.46975 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00085 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00000 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99708 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00036 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47261 * 89.99949 * 18 16 14 20 20 H 1.48507 * 109.47124 * 209.99945 * 18 16 14 21 21 H 1.48506 * 109.47307 * 330.00055 * 18 16 14 22 22 C 1.33706 * 122.54542 * 344.02250 * 11 10 8 23 23 O 1.21281 * 118.36110 * 183.34421 * 22 11 10 24 24 C 1.50158 * 123.28287 * 3.32428 * 22 11 10 25 25 O 1.42567 * 114.25681 * 139.69704 * 8 7 6 26 26 N 1.30834 * 108.20347 * 359.97438 * 4 3 2 27 27 N 1.34954 * 126.12392 * 180.30852 * 2 1 3 28 28 H 0.97001 * 126.03127 * 359.75835 * 27 2 1 29 29 H 1.09006 * 109.47001 * 269.71756 * 1 2 3 30 30 H 1.08999 * 109.46835 * 29.71523 * 1 2 3 31 31 H 1.08998 * 109.47331 * 149.71615 * 1 2 3 32 32 H 1.07997 * 126.03615 * 0.26007 * 3 2 1 33 33 H 1.09003 * 109.47167 * 214.97350 * 5 4 3 34 34 H 1.08994 * 109.47200 * 334.97514 * 5 4 3 35 35 H 1.09004 * 113.49655 * 336.49541 * 7 6 5 36 36 H 1.08994 * 113.50029 * 107.03143 * 7 6 5 37 37 H 1.09006 * 113.50050 * 252.97555 * 9 6 5 38 38 H 1.08996 * 113.49986 * 23.50968 * 9 6 5 39 39 H 1.09006 * 109.45653 * 32.38851 * 10 8 7 40 40 H 1.09001 * 109.45372 * 152.32141 * 10 8 7 41 41 H 1.08999 * 109.46869 * 210.00219 * 12 11 10 42 42 H 1.09005 * 109.47321 * 330.00299 * 12 11 10 43 43 H 1.08999 * 109.47451 * 299.99833 * 13 12 11 44 44 H 1.09005 * 109.46852 * 59.99981 * 13 12 11 45 45 H 0.97003 * 119.99656 * 179.97438 * 17 16 14 46 46 H 1.08997 * 109.34830 * 102.52390 * 24 22 11 47 47 H 1.09000 * 109.34879 * 222.22481 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 3.6335 0.6558 -0.0062 5 6 4.8544 1.5393 -0.0088 6 7 5.3267 1.7260 1.3696 7 6 4.7642 2.9563 1.9595 8 6 6.1432 3.2274 2.5614 9 6 6.6482 2.3830 1.3914 10 6 6.3639 2.5964 3.9315 11 7 5.8955 3.5106 4.9732 12 6 5.6794 2.9871 6.3243 13 6 6.9707 3.1177 7.1344 14 6 6.7482 2.5798 8.5245 15 1 5.7826 2.1840 8.8021 16 6 7.7775 2.5931 9.4418 17 7 8.9533 3.0756 9.1037 18 14 7.5019 1.9257 11.1645 19 1 7.8275 0.4771 11.1921 20 1 8.3781 2.6483 12.1214 21 1 6.0811 2.1211 11.5497 22 6 5.6575 4.8054 4.7399 23 8 5.3303 5.5082 5.6726 24 6 5.7754 5.4332 3.3809 25 8 6.5444 4.5946 2.5141 26 7 3.6333 -0.6525 -0.0092 27 7 2.3026 -1.0901 -0.0059 28 1 2.0054 -2.0134 -0.0075 29 1 -0.3633 -0.0051 1.0277 30 1 -0.3633 0.8925 -0.5094 31 1 -0.3634 -0.8874 -0.5182 32 1 1.9741 2.1210 0.0040 33 1 5.6401 1.0715 -0.6020 34 1 4.6011 2.5077 -0.4403 35 1 4.4610 3.6948 1.2174 36 1 3.9935 2.7670 2.7066 37 1 7.4633 1.7110 1.6602 38 1 6.8591 2.9651 0.4943 39 1 5.8090 1.6602 3.9937 40 1 7.4263 2.3983 4.0731 41 1 4.8861 3.5543 6.8111 42 1 5.3920 1.9372 6.2656 43 1 7.7641 2.5505 6.6477 44 1 7.2581 4.1676 7.1932 45 1 9.6774 3.0852 9.7492 46 1 4.7797 5.5713 2.9594 47 1 6.2666 6.4019 3.4720 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272542614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:36 Heat of formation + Delta-G solvation = 43.483512 kcal Electronic energy + Delta-G solvation = -28912.716115 eV Core-core repulsion = 24905.866630 eV Total energy + Delta-G solvation = -4006.849485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69779 -41.22594 -39.28706 -36.85981 -35.36982 -33.55465 -32.97809 -31.90631 -30.37129 -29.75742 -27.84730 -27.31474 -26.58526 -26.27668 -24.50233 -23.87623 -21.55054 -20.89224 -20.12464 -20.02481 -18.05444 -17.80939 -17.56572 -16.77645 -16.23379 -15.88237 -15.80231 -15.36489 -15.12853 -14.90230 -14.46740 -14.27625 -14.10031 -13.95099 -13.76425 -13.48933 -13.20328 -13.08225 -13.02494 -12.83460 -12.58478 -12.47965 -12.33317 -12.05129 -11.61414 -11.40310 -11.26536 -10.94347 -10.82197 -10.76104 -10.64055 -10.21724 -9.85197 -9.79751 -9.64864 -9.28947 -9.25822 -8.95919 -8.87498 -8.31608 -8.06122 -5.96751 -3.99681 1.58058 2.39615 2.57015 2.93158 3.16081 3.34952 3.40860 3.44544 3.48327 3.81994 4.13695 4.23973 4.33750 4.37290 4.50050 4.66359 4.70680 4.83590 4.89280 4.94271 5.02998 5.16284 5.19575 5.26942 5.33350 5.38037 5.39337 5.43749 5.47365 5.56871 5.57261 5.65974 5.80500 5.89107 5.94697 6.13222 6.32865 6.54595 6.60351 6.71779 6.87444 6.93747 6.99888 7.44572 7.64469 7.75648 7.97724 8.03906 8.39298 8.55409 9.06824 9.63732 11.14808 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.002637 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.050502 B =10613.859051 C =11628.644502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.084 3.916 3 C -0.265 4.265 4 C 0.091 3.909 5 C 0.101 3.899 6 N -0.454 5.454 7 C -0.021 4.021 8 C 0.069 3.931 9 C 0.023 3.977 10 C 0.119 3.881 11 N -0.596 5.596 12 C 0.115 3.885 13 C 0.015 3.985 14 C -0.520 4.520 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.479 3.521 23 O -0.540 6.540 24 C 0.054 3.946 25 O -0.355 6.355 26 N -0.275 5.275 27 N -0.476 5.476 28 H 0.437 0.563 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.144 0.856 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.015 0.985 44 H 0.022 0.978 45 H 0.260 0.740 46 H 0.084 0.916 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.971 -4.168 -25.334 29.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.044 4.044 3 C -0.295 4.295 4 C -0.076 4.076 5 C -0.029 4.029 6 N -0.178 5.178 7 C -0.151 4.151 8 C 0.028 3.972 9 C -0.105 4.105 10 C -0.004 4.004 11 N -0.328 5.328 12 C -0.006 4.006 13 C -0.023 4.023 14 C -0.558 4.558 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C 0.265 3.735 23 O -0.418 6.418 24 C -0.026 4.026 25 O -0.273 6.273 26 N -0.099 5.099 27 N -0.185 5.185 28 H 0.280 0.720 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.162 0.838 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.034 0.966 44 H 0.041 0.959 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.208 -5.391 -24.620 28.455 hybrid contribution -0.812 0.463 0.634 1.130 sum -14.020 -4.928 -23.986 28.217 Atomic orbital electron populations 1.20467 0.87274 1.03864 1.03602 1.21104 0.94600 0.87791 1.00929 1.21117 0.91708 0.99107 1.17573 1.21896 0.94898 0.91491 0.99330 1.20973 0.93438 0.97097 0.91430 1.68932 1.03636 1.29365 1.15849 1.24567 0.98236 0.92099 1.00150 1.22823 0.95612 0.83266 0.95520 1.23868 0.94515 0.95313 0.96843 1.21581 1.01689 0.93423 0.83727 1.47696 1.64810 1.08338 1.11967 1.21951 1.01885 0.97370 0.79378 1.19348 0.91103 0.97957 0.93915 1.21088 0.97388 1.40726 0.96638 0.92562 1.25001 0.95179 0.95393 0.98759 1.69979 1.02208 1.45882 1.35144 0.86559 0.78161 0.78842 0.84224 1.20670 1.21208 1.19815 1.20624 0.78607 0.82756 0.91519 1.90761 1.47875 1.59554 1.43593 1.22759 0.98088 0.95211 0.86508 1.88056 1.58983 1.16824 1.63396 1.77334 0.95920 1.12582 1.24024 1.46325 1.04145 1.08216 1.59820 0.71975 0.89990 0.89549 0.91130 0.83818 0.88937 0.91219 0.89889 0.88916 0.87743 0.89428 0.88668 0.90098 0.90708 0.91724 0.96631 0.95916 0.92987 0.89861 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 10.43 36.01 0.38 -0.02 16 2 C 0.08 0.67 7.21 -82.26 -0.59 0.08 16 3 C -0.27 -2.44 10.65 -40.01 -0.43 -2.86 16 4 C 0.09 0.97 6.80 -82.41 -0.56 0.41 16 5 C 0.10 0.89 5.37 -4.97 -0.03 0.86 16 6 N -0.45 -4.64 6.15 -246.17 -1.51 -6.16 16 7 C -0.02 -0.22 6.55 -7.28 -0.05 -0.27 16 8 C 0.07 0.82 1.29 -91.03 -0.12 0.70 16 9 C 0.02 0.22 7.12 -7.29 -0.05 0.17 16 10 C 0.12 1.77 5.85 -4.43 -0.03 1.75 16 11 N -0.60 -11.06 2.84 -174.72 -0.50 -11.56 16 12 C 0.11 2.51 5.20 -4.04 -0.02 2.49 16 13 C 0.01 0.40 5.29 -27.88 -0.15 0.25 16 14 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -27.67 13.29 55.43 0.74 -26.94 16 18 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.48 8.92 7.57 -11.72 -0.09 8.83 16 23 O -0.54 -12.39 16.33 5.56 0.09 -12.30 16 24 C 0.05 0.72 6.70 35.74 0.24 0.96 16 25 O -0.35 -4.63 10.68 -35.23 -0.38 -5.00 16 26 N -0.28 -3.24 12.70 33.67 0.43 -2.81 16 27 N -0.48 -4.18 7.36 33.48 0.25 -3.93 16 28 H 0.44 2.51 8.96 -182.61 -1.64 0.87 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.09 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.07 0.48 7.30 -51.93 -0.38 0.10 16 35 H 0.08 0.70 7.42 -51.93 -0.39 0.32 16 36 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 37 H 0.10 0.96 8.11 -51.93 -0.42 0.54 16 38 H 0.09 0.69 7.91 -51.93 -0.41 0.28 16 39 H 0.10 1.36 7.83 -51.93 -0.41 0.95 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.07 1.74 7.29 -51.93 -0.38 1.36 16 42 H 0.06 1.30 7.97 -51.93 -0.41 0.89 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.08 0.90 7.99 -51.93 -0.41 0.48 16 47 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 388.87 15.07 5.86 5.86 Total: -1.00 -37.27 388.87 -10.56 -47.83 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -8.61 Total: -1.67 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.90 Total: -0.50 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.60 Total: -51.40 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.29 Total: -17.30 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.27 -10.56 -47.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272542614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.312 kcal (2) G-P(sol) polarization free energy of solvation -37.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds