Wall clock time and date at job start Tue Mar 31 2020 18:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35315 * 126.13100 * 2 1 4 4 C 1.39867 * 107.92134 * 180.26483 * 3 2 1 5 5 C 1.50704 * 125.89829 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47005 * 94.97208 * 5 4 3 7 7 C 1.47573 * 111.00244 * 266.09407 * 6 5 4 8 8 C 1.52959 * 87.81086 * 221.69655 * 7 6 5 9 9 C 1.47575 * 110.99902 * 169.99892 * 6 5 4 10 10 C 1.52669 * 114.02063 * 139.33307 * 8 7 6 11 11 O 1.43395 * 108.27027 * 177.91570 * 10 8 7 12 12 C 1.42809 * 113.35991 * 294.60003 * 11 10 8 13 13 C 1.50281 * 110.53622 * 51.36835 * 12 11 10 14 14 O 1.21282 * 118.99572 * 161.43630 * 13 12 11 15 15 N 1.34313 * 122.01147 * 341.41300 * 13 12 11 16 16 C 1.46501 * 119.40643 * 182.06614 * 15 13 12 17 17 C 1.52997 * 109.47367 * 269.97828 * 16 15 13 18 18 C 1.50702 * 109.47381 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00088 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00136 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99977 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00089 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47395 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47369 * 120.00230 * 22 20 18 25 25 H 1.48498 * 109.47381 * 240.00185 * 22 20 18 26 26 N 1.30834 * 108.20347 * 359.97438 * 4 3 2 27 27 N 1.34954 * 126.12392 * 180.30852 * 2 1 3 28 28 H 0.97001 * 126.03092 * 359.71453 * 27 2 1 29 29 H 1.09006 * 109.47001 * 269.71756 * 1 2 3 30 30 H 1.08999 * 109.46835 * 29.71523 * 1 2 3 31 31 H 1.08998 * 109.47331 * 149.71615 * 1 2 3 32 32 H 1.07997 * 126.03615 * 0.26007 * 3 2 1 33 33 H 1.09003 * 109.47167 * 214.97350 * 5 4 3 34 34 H 1.08994 * 109.47200 * 334.97514 * 5 4 3 35 35 H 1.09001 * 113.49297 * 336.43407 * 7 6 5 36 36 H 1.09004 * 113.49515 * 106.96341 * 7 6 5 37 37 H 1.08996 * 113.49976 * 253.03992 * 9 6 5 38 38 H 1.09005 * 113.49501 * 23.56484 * 9 6 5 39 39 H 1.09000 * 109.70609 * 297.62061 * 10 8 7 40 40 H 1.09000 * 109.70302 * 58.24172 * 10 8 7 41 41 H 1.08994 * 109.26315 * 291.09449 * 12 11 10 42 42 H 1.09005 * 109.26537 * 171.64033 * 12 11 10 43 43 H 1.09000 * 109.47239 * 29.98217 * 16 15 13 44 44 H 1.08998 * 109.47372 * 149.97677 * 16 15 13 45 45 H 1.09000 * 109.47258 * 300.00377 * 17 16 15 46 46 H 1.09003 * 109.46758 * 60.00033 * 17 16 15 47 47 H 0.97001 * 119.99766 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 3.6335 0.6558 -0.0062 5 6 4.8544 1.5393 -0.0088 6 7 5.3267 1.7260 1.3696 7 6 4.7645 2.9564 1.9593 8 6 6.1435 3.2270 2.5633 9 6 6.6481 2.3829 1.3914 10 6 6.5720 4.6910 2.5028 11 8 7.8502 4.8121 3.1414 12 6 7.8139 4.5252 4.5399 13 6 7.1439 3.2034 4.7897 14 8 7.3210 2.6460 5.8522 15 7 6.3545 2.6207 3.8724 16 6 5.6933 1.3534 4.1932 17 6 6.5984 0.1886 3.7869 18 6 5.9184 -1.1150 4.1175 19 1 4.9385 -1.1130 4.5716 20 6 6.5468 -2.3102 3.8393 21 7 7.7399 -2.3127 3.2858 22 14 5.7037 -3.9261 4.2484 23 1 4.3783 -3.6521 4.8596 24 1 5.5209 -4.7178 3.0054 25 1 6.5413 -4.6932 5.2051 26 7 3.6333 -0.6525 -0.0092 27 7 2.3026 -1.0901 -0.0059 28 1 2.0054 -2.0134 -0.0069 29 1 -0.3633 -0.0051 1.0277 30 1 -0.3633 0.8925 -0.5094 31 1 -0.3634 -0.8874 -0.5182 32 1 1.9741 2.1210 0.0040 33 1 5.6401 1.0715 -0.6020 34 1 4.6011 2.5077 -0.4403 35 1 4.4625 3.6953 1.2171 36 1 3.9928 2.7672 2.7056 37 1 7.4632 1.7107 1.6591 38 1 6.8585 2.9658 0.4946 39 1 6.6490 5.0088 1.4630 40 1 5.8412 5.3097 3.0237 41 1 7.2611 5.3114 5.0540 42 1 8.8325 4.4908 4.9266 43 1 5.4991 1.3059 5.2647 44 1 4.7506 1.2876 3.6500 45 1 6.7926 0.2361 2.7154 46 1 7.5410 0.2544 4.3303 47 1 8.1821 -3.1537 3.0905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272542664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:40 Heat of formation + Delta-G solvation = 53.922294 kcal Electronic energy + Delta-G solvation = -30439.664213 eV Core-core repulsion = 26433.267387 eV Total energy + Delta-G solvation = -4006.396826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.45070 -40.90328 -38.88728 -37.35002 -34.75573 -33.15066 -32.56630 -31.45501 -30.24018 -29.53707 -27.83574 -26.94572 -26.56222 -26.07695 -24.10289 -23.26964 -21.05574 -20.72040 -20.39014 -19.58862 -18.04813 -17.41525 -17.20565 -16.61056 -16.12732 -15.85464 -15.47947 -15.06010 -14.85105 -14.52348 -14.35742 -14.31470 -13.96984 -13.71697 -13.54877 -13.17905 -13.06890 -12.76526 -12.73058 -12.63004 -12.30509 -12.11347 -11.98766 -11.64431 -11.32588 -11.15083 -11.04349 -10.81892 -10.69445 -10.51917 -10.33489 -10.21426 -9.66954 -9.53052 -9.23962 -9.07265 -8.79606 -8.56361 -8.42828 -8.11463 -7.97189 -5.79864 -3.78175 2.06806 2.88384 2.90448 3.05277 3.21495 3.41526 3.47520 3.51681 3.67947 4.16586 4.44811 4.53401 4.62733 4.64990 4.67609 4.77761 4.98020 5.01111 5.18887 5.26951 5.29064 5.31705 5.32095 5.40931 5.45308 5.57618 5.57895 5.62984 5.67624 5.72465 5.83661 5.89600 6.18264 6.24703 6.37063 6.53476 6.70298 6.76665 6.80068 6.99441 7.18653 7.19039 7.47032 7.83083 7.92976 7.97351 8.18960 8.26802 8.52252 8.66265 9.26676 9.82220 11.32396 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007827 B = 0.005657 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3576.674786 B = 4948.386713 C = 7645.617299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.076 3.924 3 C -0.267 4.267 4 C 0.090 3.910 5 C 0.099 3.901 6 N -0.432 5.432 7 C -0.006 4.006 8 C 0.109 3.891 9 C -0.005 4.005 10 C 0.067 3.933 11 O -0.368 6.368 12 C 0.049 3.951 13 C 0.480 3.520 14 O -0.534 6.534 15 N -0.568 5.568 16 C 0.121 3.879 17 C 0.021 3.979 18 C -0.500 4.500 19 H 0.048 0.952 20 C 0.060 3.940 21 N -0.894 5.894 22 Si 0.887 3.113 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.286 1.286 26 N -0.254 5.254 27 N -0.476 5.476 28 H 0.435 0.565 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.140 0.860 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.127 0.873 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.037 0.963 46 H 0.008 0.992 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.399 15.652 -9.899 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 C -0.297 4.297 4 C -0.078 4.078 5 C -0.031 4.031 6 N -0.153 5.153 7 C -0.136 4.136 8 C 0.020 3.980 9 C -0.135 4.135 10 C -0.011 4.011 11 O -0.286 6.286 12 C -0.031 4.031 13 C 0.267 3.733 14 O -0.411 6.411 15 N -0.300 5.300 16 C 0.001 3.999 17 C -0.017 4.017 18 C -0.539 4.539 19 H 0.067 0.933 20 C -0.140 4.140 21 N -0.535 5.535 22 Si 0.715 3.285 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.213 1.213 26 N -0.076 5.076 27 N -0.184 5.184 28 H 0.278 0.722 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.158 0.842 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.131 0.869 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.145 0.855 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.055 0.945 46 H 0.027 0.973 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.402 13.572 -9.199 19.417 hybrid contribution -1.311 -0.305 -0.190 1.359 sum -11.712 13.267 -9.389 20.034 Atomic orbital electron populations 1.20413 0.87728 1.03458 1.03277 1.21027 0.94324 0.88035 1.01859 1.21009 0.91785 0.98641 1.18292 1.21890 0.94665 0.91613 0.99597 1.20963 0.93524 0.96367 0.92205 1.69242 1.02995 1.28221 1.14889 1.24305 0.97041 0.92726 0.99557 1.21685 0.97354 0.93382 0.85566 1.24375 0.95625 0.97029 0.96477 1.22892 0.85823 0.92753 0.99630 1.88135 1.29827 1.89807 1.20805 1.22789 1.03669 0.93612 0.82989 1.20934 0.79927 0.87820 0.84602 1.90759 1.61203 1.63950 1.25178 1.47440 1.46772 1.24129 1.11619 1.21945 0.96987 0.81230 0.99701 1.19349 0.94107 0.90342 0.97865 1.21037 1.02616 0.90930 1.39315 0.93323 1.24878 0.94877 0.98683 0.95535 1.69977 1.13917 1.25829 1.43741 0.86627 0.79564 0.84539 0.77737 1.20097 1.21295 1.21270 1.77556 0.95185 1.12595 1.22292 1.46389 1.04356 1.08107 1.59563 0.72160 0.90294 0.89886 0.91380 0.84220 0.89281 0.91993 0.90221 0.88895 0.87683 0.90609 0.86873 0.91687 0.89944 0.85516 0.91974 0.90580 0.94454 0.97331 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 10.43 36.01 0.38 -0.31 16 2 C 0.08 0.93 7.21 -82.26 -0.59 0.34 16 3 C -0.27 -3.50 10.65 -40.01 -0.43 -3.92 16 4 C 0.09 1.43 6.80 -82.41 -0.56 0.87 16 5 C 0.10 1.38 5.37 -4.97 -0.03 1.35 16 6 N -0.43 -6.86 4.26 -246.07 -1.05 -7.91 16 7 C -0.01 -0.08 6.30 -7.31 -0.05 -0.13 16 8 C 0.11 1.51 1.67 -132.98 -0.22 1.29 16 9 C -0.01 -0.08 6.23 -7.30 -0.05 -0.12 16 10 C 0.07 0.69 6.14 36.99 0.23 0.92 16 11 O -0.37 -4.70 10.84 -35.23 -0.38 -5.08 16 12 C 0.05 0.65 6.93 35.80 0.25 0.90 16 13 C 0.48 8.99 7.64 -11.40 -0.09 8.90 16 14 O -0.53 -12.38 16.49 5.56 0.09 -12.29 16 15 N -0.57 -10.49 2.69 -160.35 -0.43 -10.93 16 16 C 0.12 2.74 4.49 -4.04 -0.02 2.72 16 17 C 0.02 0.58 5.02 -27.88 -0.14 0.44 16 18 C -0.50 -15.11 9.11 -34.44 -0.31 -15.43 16 19 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 20 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 21 N -0.89 -28.51 13.29 55.43 0.74 -27.78 16 22 Si 0.89 23.29 29.54 -169.99 -5.02 18.26 16 23 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 26 N -0.25 -4.69 12.70 33.67 0.43 -4.26 16 27 N -0.48 -6.88 7.36 33.48 0.25 -6.63 16 28 H 0.44 5.11 8.96 -182.61 -1.64 3.47 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 34 H 0.06 0.63 7.30 -51.93 -0.38 0.25 16 35 H 0.08 0.69 7.37 -51.93 -0.38 0.30 16 36 H 0.09 1.28 7.04 -51.93 -0.37 0.91 16 37 H 0.10 2.00 6.83 -51.93 -0.35 1.65 16 38 H 0.08 0.84 7.66 -51.93 -0.40 0.44 16 39 H 0.11 0.84 7.84 -51.93 -0.41 0.43 16 40 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 43 H 0.06 1.52 7.36 -51.93 -0.38 1.14 16 44 H 0.08 1.67 5.57 -51.93 -0.29 1.38 16 45 H 0.04 1.06 5.34 -51.93 -0.28 0.78 16 46 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 378.36 15.07 5.70 5.70 Total: -1.00 -39.61 378.36 -9.62 -49.22 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -8.21 Total: 2.11 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -1.72 Total: -0.42 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.07 Total: -57.50 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.29 Total: -17.38 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.26 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -39.61 -9.62 -49.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272542664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.146 kcal (2) G-P(sol) polarization free energy of solvation -39.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds