Wall clock time and date at job start Tue Mar 31 2020 18:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35315 * 126.13100 * 2 1 4 4 C 1.39867 * 107.92134 * 180.26483 * 3 2 1 5 5 C 1.50704 * 125.89829 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47005 * 94.97208 * 5 4 3 7 7 C 1.47573 * 111.00244 * 266.09407 * 6 5 4 8 8 C 1.52959 * 87.81086 * 221.69655 * 7 6 5 9 9 C 1.47575 * 110.99902 * 169.99892 * 6 5 4 10 10 C 1.52669 * 114.02063 * 139.33307 * 8 7 6 11 11 O 1.43395 * 108.27027 * 177.91570 * 10 8 7 12 12 C 1.42809 * 113.35991 * 294.60003 * 11 10 8 13 13 C 1.50281 * 110.53622 * 51.36835 * 12 11 10 14 14 O 1.21282 * 118.99572 * 161.43630 * 13 12 11 15 15 N 1.34313 * 122.01147 * 341.41300 * 13 12 11 16 16 C 1.46501 * 119.40643 * 182.06614 * 15 13 12 17 17 C 1.52997 * 109.47367 * 269.97828 * 16 15 13 18 18 C 1.50702 * 109.47381 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00088 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00136 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99977 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00089 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47395 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47369 * 120.00230 * 22 20 18 25 25 H 1.48498 * 109.47381 * 240.00185 * 22 20 18 26 26 N 1.30834 * 108.20347 * 359.97438 * 4 3 2 27 27 N 1.34954 * 126.12392 * 180.30852 * 2 1 3 28 28 H 0.97001 * 126.03092 * 359.71453 * 27 2 1 29 29 H 1.09006 * 109.47001 * 269.71756 * 1 2 3 30 30 H 1.08999 * 109.46835 * 29.71523 * 1 2 3 31 31 H 1.08998 * 109.47331 * 149.71615 * 1 2 3 32 32 H 1.07997 * 126.03615 * 0.26007 * 3 2 1 33 33 H 1.09003 * 109.47167 * 214.97350 * 5 4 3 34 34 H 1.08994 * 109.47200 * 334.97514 * 5 4 3 35 35 H 1.09001 * 113.49297 * 336.43407 * 7 6 5 36 36 H 1.09004 * 113.49515 * 106.96341 * 7 6 5 37 37 H 1.08996 * 113.49976 * 253.03992 * 9 6 5 38 38 H 1.09005 * 113.49501 * 23.56484 * 9 6 5 39 39 H 1.09000 * 109.70609 * 297.62061 * 10 8 7 40 40 H 1.09000 * 109.70302 * 58.24172 * 10 8 7 41 41 H 1.08994 * 109.26315 * 291.09449 * 12 11 10 42 42 H 1.09005 * 109.26537 * 171.64033 * 12 11 10 43 43 H 1.09000 * 109.47239 * 29.98217 * 16 15 13 44 44 H 1.08998 * 109.47372 * 149.97677 * 16 15 13 45 45 H 1.09000 * 109.47258 * 300.00377 * 17 16 15 46 46 H 1.09003 * 109.46758 * 60.00033 * 17 16 15 47 47 H 0.97001 * 119.99766 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 3.6335 0.6558 -0.0062 5 6 4.8544 1.5393 -0.0088 6 7 5.3267 1.7260 1.3696 7 6 4.7645 2.9564 1.9593 8 6 6.1435 3.2270 2.5633 9 6 6.6481 2.3829 1.3914 10 6 6.5720 4.6910 2.5028 11 8 7.8502 4.8121 3.1414 12 6 7.8139 4.5252 4.5399 13 6 7.1439 3.2034 4.7897 14 8 7.3210 2.6460 5.8522 15 7 6.3545 2.6207 3.8724 16 6 5.6933 1.3534 4.1932 17 6 6.5984 0.1886 3.7869 18 6 5.9184 -1.1150 4.1175 19 1 4.9385 -1.1130 4.5716 20 6 6.5468 -2.3102 3.8393 21 7 7.7399 -2.3127 3.2858 22 14 5.7037 -3.9261 4.2484 23 1 4.3783 -3.6521 4.8596 24 1 5.5209 -4.7178 3.0054 25 1 6.5413 -4.6932 5.2051 26 7 3.6333 -0.6525 -0.0092 27 7 2.3026 -1.0901 -0.0059 28 1 2.0054 -2.0134 -0.0069 29 1 -0.3633 -0.0051 1.0277 30 1 -0.3633 0.8925 -0.5094 31 1 -0.3634 -0.8874 -0.5182 32 1 1.9741 2.1210 0.0040 33 1 5.6401 1.0715 -0.6020 34 1 4.6011 2.5077 -0.4403 35 1 4.4625 3.6953 1.2171 36 1 3.9928 2.7672 2.7056 37 1 7.4632 1.7107 1.6591 38 1 6.8585 2.9658 0.4946 39 1 6.6490 5.0088 1.4630 40 1 5.8412 5.3097 3.0237 41 1 7.2611 5.3114 5.0540 42 1 8.8325 4.4908 4.9266 43 1 5.4991 1.3059 5.2647 44 1 4.7506 1.2876 3.6500 45 1 6.7926 0.2361 2.7154 46 1 7.5410 0.2544 4.3303 47 1 8.1821 -3.1537 3.0905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272542664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:38 Heat of formation + Delta-G solvation = 21.389686 kcal Electronic energy + Delta-G solvation = -30441.074933 eV Core-core repulsion = 26433.267387 eV Total energy + Delta-G solvation = -4007.807546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.61324 -41.97174 -40.19905 -38.50387 -36.37836 -35.01961 -33.92620 -32.50274 -31.84589 -30.90159 -29.01695 -28.01747 -27.73820 -27.14645 -26.01160 -24.40313 -22.90664 -22.10463 -21.37993 -20.65951 -19.34348 -18.78838 -18.36829 -18.20279 -17.60038 -17.12461 -16.67760 -16.59553 -16.19342 -15.94508 -15.68497 -15.44573 -15.14058 -14.97210 -14.57181 -14.44095 -14.38320 -14.08507 -14.04415 -13.68285 -13.51001 -13.39759 -13.30973 -12.96850 -12.85517 -12.69421 -12.62130 -12.35383 -12.20685 -12.01270 -11.72889 -11.67447 -11.30226 -11.28282 -11.26465 -10.52196 -10.44111 -10.15877 -9.62503 -9.56905 -9.42689 -8.19469 -6.27304 1.06005 1.27804 1.30765 1.41948 1.46430 1.85773 1.89960 2.08970 2.37728 2.73399 3.13056 3.14992 3.31140 3.48041 3.64635 3.77125 3.85567 4.09129 4.20590 4.27758 4.33117 4.35801 4.44041 4.52801 4.57437 4.59400 4.62536 4.69727 4.73566 4.77600 4.78306 4.88211 4.92654 4.95428 5.10146 5.12420 5.28566 5.33270 5.49021 5.52221 5.74764 5.80610 5.83261 5.96645 6.17599 6.25275 6.54304 6.54979 6.86381 6.91014 7.10575 7.38327 8.93220 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007827 B = 0.005657 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3576.674786 B = 4948.386713 C = 7645.617299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.083 3.917 3 C -0.278 4.278 4 C 0.079 3.921 5 C 0.102 3.898 6 N -0.484 5.484 7 C 0.011 3.989 8 C 0.098 3.902 9 C -0.002 4.002 10 C 0.070 3.930 11 O -0.374 6.374 12 C 0.064 3.936 13 C 0.467 3.533 14 O -0.594 6.594 15 N -0.573 5.573 16 C 0.146 3.854 17 C 0.041 3.959 18 C -0.523 4.523 19 H 0.047 0.953 20 C 0.004 3.996 21 N -0.931 5.931 22 Si 0.959 3.041 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.277 1.277 26 N -0.332 5.332 27 N -0.483 5.483 28 H 0.440 0.560 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.172 0.828 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.136 0.864 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.122 0.878 39 H 0.156 0.844 40 H 0.096 0.904 41 H 0.123 0.877 42 H 0.133 0.867 43 H 0.035 0.965 44 H 0.086 0.914 45 H 0.025 0.975 46 H -0.046 1.046 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.113 18.629 -11.396 26.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 C -0.307 4.307 4 C -0.088 4.088 5 C -0.027 4.027 6 N -0.206 5.206 7 C -0.118 4.118 8 C 0.011 3.989 9 C -0.131 4.131 10 C -0.007 4.007 11 O -0.292 6.292 12 C -0.015 4.015 13 C 0.256 3.744 14 O -0.476 6.476 15 N -0.302 5.302 16 C 0.024 3.976 17 C 0.004 3.996 18 C -0.562 4.562 19 H 0.065 0.935 20 C -0.193 4.193 21 N -0.572 5.572 22 Si 0.784 3.216 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.203 1.203 26 N -0.156 5.156 27 N -0.192 5.192 28 H 0.285 0.715 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.189 0.811 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.153 0.847 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.139 0.861 39 H 0.174 0.826 40 H 0.114 0.886 41 H 0.140 0.860 42 H 0.151 0.849 43 H 0.053 0.947 44 H 0.104 0.896 45 H 0.043 0.957 46 H -0.028 1.028 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.125 16.589 -10.735 23.721 hybrid contribution -0.485 -1.270 0.211 1.375 sum -13.611 15.320 -10.524 23.037 Atomic orbital electron populations 1.20574 0.84222 1.05406 1.04250 1.21837 0.96343 0.87071 0.99370 1.21399 0.90505 1.00380 1.18410 1.22385 0.96566 0.91186 0.98666 1.21060 0.92361 0.98057 0.91254 1.69122 1.03938 1.30941 1.16644 1.24326 0.95216 0.92391 0.99858 1.22151 0.98831 0.95381 0.82516 1.24336 0.93593 0.96424 0.98793 1.23261 0.85331 0.89779 1.02308 1.88143 1.31638 1.89229 1.20191 1.22742 1.03799 0.90748 0.84198 1.22176 0.79099 0.89488 0.83600 1.90720 1.63102 1.65988 1.27741 1.47450 1.46271 1.22617 1.13905 1.21265 0.96403 0.82099 0.97860 1.19062 0.92395 0.92126 0.96056 1.21423 1.02769 0.92497 1.39529 0.93496 1.25826 0.95531 1.02841 0.95132 1.70123 1.15481 1.27045 1.44567 0.85492 0.78821 0.79399 0.77868 1.18917 1.20403 1.20271 1.77449 0.97815 1.14667 1.25662 1.46440 1.03734 1.09176 1.59891 0.71531 0.89584 0.87522 0.89898 0.81080 0.91391 0.87261 0.84686 0.90415 0.93649 0.86056 0.82648 0.88571 0.85982 0.84917 0.94677 0.89630 0.95718 1.02772 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 10.43 71.24 0.74 -0.30 16 2 C 0.08 1.87 7.21 41.40 0.30 2.17 16 3 C -0.28 -6.62 10.65 21.99 0.23 -6.38 16 4 C 0.08 2.47 6.80 43.10 0.29 2.76 16 5 C 0.10 2.71 5.37 85.56 0.46 3.17 16 6 N -0.48 -15.14 4.26 -932.43 -3.97 -19.11 16 7 C 0.01 0.24 6.30 83.68 0.53 0.77 16 8 C 0.10 2.53 1.67 3.81 0.01 2.54 16 9 C 0.00 -0.05 6.23 83.68 0.52 0.47 16 10 C 0.07 1.10 6.14 71.87 0.44 1.54 16 11 O -0.37 -8.26 10.84 -148.98 -1.61 -9.88 16 12 C 0.06 1.59 6.93 71.10 0.49 2.08 16 13 C 0.47 17.85 7.64 87.60 0.67 18.52 16 14 O -0.59 -29.22 16.49 -3.04 -0.05 -29.27 16 15 N -0.57 -21.60 2.69 -779.89 -2.10 -23.70 16 16 C 0.15 6.99 4.49 86.38 0.39 7.38 16 17 C 0.04 2.47 5.02 29.85 0.15 2.62 16 18 C -0.52 -33.42 9.11 25.60 0.23 -33.18 16 19 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 20 C 0.00 0.24 5.46 84.65 0.46 0.71 16 21 N -0.93 -62.33 13.29 21.45 0.28 -62.05 16 22 Si 0.96 49.40 29.54 68.60 2.03 51.42 16 23 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.28 -13.89 7.11 99.48 0.71 -13.19 16 25 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 26 N -0.33 -12.72 12.70 -47.38 -0.60 -13.32 16 27 N -0.48 -14.05 7.36 -48.00 -0.35 -14.40 16 28 H 0.44 10.60 8.96 -213.33 -1.91 8.69 16 29 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 33 H 0.07 2.02 8.08 -2.39 -0.02 2.00 16 34 H 0.11 1.73 7.30 -2.39 -0.02 1.72 16 35 H 0.14 1.43 7.37 -2.39 -0.02 1.41 16 36 H 0.08 1.96 7.04 -2.38 -0.02 1.94 16 37 H 0.04 1.85 6.83 -2.39 -0.02 1.84 16 38 H 0.12 2.30 7.66 -2.38 -0.02 2.28 16 39 H 0.16 1.20 7.84 -2.39 -0.02 1.18 16 40 H 0.10 1.02 8.13 -2.39 -0.02 1.00 16 41 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.13 3.13 8.14 -2.38 -0.02 3.12 16 43 H 0.03 1.84 7.36 -2.39 -0.02 1.82 16 44 H 0.09 3.91 5.57 -2.39 -0.01 3.90 16 45 H 0.02 1.52 5.34 -2.39 -0.01 1.51 16 46 H -0.05 -3.20 8.14 -2.39 -0.02 -3.22 16 47 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 Total: -1.00 -97.72 378.36 -1.36 -99.09 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -0.91 Total: 16.36 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 5.92 Total: 4.86 kcal Atomic # 7 Polarization: -125.85 SS G_CDS: -6.73 Total: -132.58 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -1.67 Total: -39.15 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.03 Total: 51.42 kcal Total: -97.72 -1.36 -99.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272542664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.478 kcal (2) G-P(sol) polarization free energy of solvation -97.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds