Wall clock time and date at job start Tue Mar 31 2020 18:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39769 * 125.83978 * 2 1 4 4 C 1.36174 * 107.81337 * 180.16087 * 3 2 1 5 5 N 1.39212 * 126.21860 * 179.84313 * 4 3 2 6 6 C 1.48043 * 110.99938 * 359.68641 * 5 4 3 7 7 C 1.53474 * 86.05413 * 222.70366 * 6 5 4 8 8 C 1.48035 * 110.99945 * 260.24829 * 5 4 3 9 9 C 1.52774 * 113.54810 * 137.77325 * 7 6 5 10 10 O 1.43389 * 108.26066 * 176.79082 * 9 7 6 11 11 C 1.42820 * 113.33570 * 294.36829 * 10 9 7 12 12 C 1.50276 * 110.49557 * 51.31111 * 11 10 9 13 13 O 1.21281 * 118.97674 * 161.60475 * 12 11 10 14 14 N 1.34275 * 122.05565 * 341.63128 * 12 11 10 15 15 C 1.46503 * 119.37679 * 181.94591 * 14 12 11 16 16 C 1.52995 * 109.46790 * 274.10109 * 15 14 12 17 17 C 1.50700 * 109.46986 * 174.90732 * 16 15 14 18 18 H 1.08006 * 120.00085 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00332 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99617 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00182 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47058 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46991 * 120.00102 * 21 19 17 24 24 H 1.48501 * 109.46854 * 239.99855 * 21 19 17 25 25 N 1.35248 * 107.55815 * 359.57987 * 4 3 2 26 26 C 1.46497 * 126.04073 * 180.26487 * 25 4 3 27 27 N 1.30842 * 125.83581 * 179.68626 * 2 1 3 28 28 H 1.09002 * 109.47190 * 270.32959 * 1 2 3 29 29 H 1.08997 * 109.46969 * 30.33551 * 1 2 3 30 30 H 1.09004 * 109.46706 * 150.33273 * 1 2 3 31 31 H 1.08003 * 126.09659 * 0.02562 * 3 2 1 32 32 H 1.09008 * 113.77742 * 108.42417 * 6 5 4 33 33 H 1.08992 * 113.88689 * 337.00541 * 6 5 4 34 34 H 1.09004 * 113.78547 * 23.00789 * 8 5 4 35 35 H 1.09004 * 113.78109 * 251.57503 * 8 5 4 36 36 H 1.08999 * 109.70622 * 57.10032 * 9 7 6 37 37 H 1.09001 * 109.70528 * 296.48266 * 9 7 6 38 38 H 1.08998 * 109.30200 * 171.62716 * 11 10 9 39 39 H 1.09000 * 109.29651 * 290.99729 * 11 10 9 40 40 H 1.08996 * 109.46705 * 34.09981 * 15 14 12 41 41 H 1.09001 * 109.46947 * 154.09810 * 15 14 12 42 42 H 1.08998 * 109.47285 * 294.90447 * 16 15 14 43 43 H 1.08996 * 109.47198 * 54.91160 * 16 15 14 44 44 H 0.97000 * 119.99414 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.47484 * 90.00150 * 26 25 4 46 46 H 1.09004 * 109.47246 * 210.00357 * 26 25 4 47 47 H 1.09000 * 109.47270 * 329.99511 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1330 0.0000 4 6 3.6203 0.7116 -0.0036 5 7 4.7500 1.5251 -0.0079 6 6 4.3729 2.9567 -0.0157 7 6 5.4880 3.1355 -1.0550 8 6 5.3130 1.6438 -1.3719 9 6 5.1013 4.0539 -2.2131 10 8 6.2416 4.2007 -3.0700 11 6 7.3319 4.8828 -2.4491 12 6 7.6562 4.2577 -1.1216 13 8 8.7378 4.4756 -0.6180 14 7 6.7861 3.4648 -0.4757 15 6 7.1466 2.9205 0.8359 16 6 7.9408 1.6262 0.6500 17 6 8.4186 1.1330 1.9915 18 1 8.1800 1.6876 2.8871 19 6 9.1603 -0.0262 2.0757 20 7 9.4504 -0.7018 0.9852 21 14 9.7519 -0.6379 3.7386 22 1 9.2944 0.2942 4.8002 23 1 9.1956 -1.9907 3.9949 24 1 11.2354 -0.7039 3.7426 25 7 3.6092 -0.6408 0.0036 26 6 4.7868 -1.5123 0.0084 27 7 2.2730 -1.0607 0.0058 28 1 -0.3634 0.0059 1.0277 29 1 -0.3633 0.8869 -0.5190 30 1 -0.3633 -0.8930 -0.5087 31 1 1.9905 2.1598 0.0004 32 1 4.5658 3.4671 0.9280 33 1 3.3734 3.1477 -0.4061 34 1 4.5915 1.4444 -2.1642 35 1 6.2537 1.1099 -1.5071 36 1 4.8047 5.0287 -1.8259 37 1 4.2759 3.6130 -2.7719 38 1 8.2070 4.8278 -3.0966 39 1 7.0639 5.9286 -2.2989 40 1 7.7553 3.6461 1.3754 41 1 6.2402 2.7123 1.4044 42 1 7.3025 0.8709 0.1916 43 1 8.7994 1.8160 0.0059 44 1 9.9725 -1.5172 1.0444 45 1 5.0787 -1.7230 1.0372 46 1 4.5494 -2.4466 -0.5005 47 1 5.6083 -1.0159 -0.5081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273570769.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:02 Heat of formation + Delta-G solvation = 35.070604 kcal Electronic energy + Delta-G solvation = -30761.686645 eV Core-core repulsion = 26754.472349 eV Total energy + Delta-G solvation = -4007.214296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.14528 -41.82349 -40.05818 -38.54137 -36.37174 -35.06477 -34.71348 -32.46131 -31.48868 -30.42688 -29.76553 -28.54147 -27.77752 -26.55934 -26.19031 -25.57189 -23.03372 -22.59276 -21.00261 -20.56859 -19.43938 -18.89388 -18.48255 -18.24380 -17.54272 -16.97355 -16.68596 -16.66447 -16.49176 -16.09488 -15.61234 -15.54757 -15.25227 -14.95348 -14.53848 -14.38341 -14.33803 -14.20055 -14.06332 -13.76608 -13.69231 -13.42777 -13.26742 -13.14262 -13.05048 -12.89619 -12.74811 -12.62940 -12.40129 -12.19006 -11.84094 -11.71481 -11.45999 -11.38608 -11.30947 -10.80979 -10.54832 -10.36416 -9.75154 -9.69812 -9.21604 -8.21345 -6.30168 0.82794 1.33277 1.34489 1.40279 1.45788 1.47509 1.79269 1.81765 2.38046 2.57672 2.73254 3.12500 3.22702 3.34359 3.39930 3.62154 3.82699 3.98317 4.13764 4.16725 4.25720 4.26999 4.31473 4.36549 4.47151 4.51281 4.53558 4.56915 4.65176 4.65653 4.74484 4.80773 4.83631 4.90509 4.97760 5.05657 5.13393 5.21339 5.26985 5.50398 5.56442 5.69850 5.78522 5.83583 5.89380 6.22269 6.27742 6.45895 6.83743 6.84745 7.07084 7.36928 8.90422 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007887 B = 0.005769 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3549.112235 B = 4852.459292 C = 7722.167035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.077 3.923 3 C -0.306 4.306 4 C 0.235 3.765 5 N -0.443 5.443 6 C 0.026 3.974 7 C 0.109 3.891 8 C 0.015 3.985 9 C 0.066 3.934 10 O -0.374 6.374 11 C 0.062 3.938 12 C 0.470 3.530 13 O -0.586 6.586 14 N -0.576 5.576 15 C 0.138 3.862 16 C 0.039 3.961 17 C -0.532 4.532 18 H 0.053 0.947 19 C 0.008 3.992 20 N -0.928 5.928 21 Si 0.956 3.044 22 H -0.265 1.265 23 H -0.276 1.276 24 H -0.281 1.281 25 N -0.380 5.380 26 C 0.115 3.885 27 N -0.336 5.336 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.183 0.817 32 H 0.104 0.896 33 H 0.143 0.857 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.150 0.850 38 H 0.134 0.866 39 H 0.125 0.875 40 H 0.042 0.958 41 H 0.091 0.909 42 H 0.016 0.984 43 H -0.037 1.037 44 H 0.261 0.739 45 H 0.060 0.940 46 H 0.097 0.903 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.317 9.815 -8.546 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C -0.337 4.337 4 C 0.012 3.988 5 N -0.163 5.163 6 C -0.102 4.102 7 C 0.022 3.978 8 C -0.113 4.113 9 C -0.011 4.011 10 O -0.291 6.291 11 C -0.017 4.017 12 C 0.260 3.740 13 O -0.467 6.467 14 N -0.306 5.306 15 C 0.017 3.983 16 C 0.001 3.999 17 C -0.571 4.571 18 H 0.071 0.929 19 C -0.190 4.190 20 N -0.568 5.568 21 Si 0.781 3.219 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.207 1.207 25 N -0.163 5.163 26 C -0.027 4.027 27 N -0.160 5.160 28 H 0.103 0.897 29 H 0.123 0.877 30 H 0.090 0.910 31 H 0.200 0.800 32 H 0.122 0.878 33 H 0.160 0.840 34 H 0.127 0.873 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.168 0.832 38 H 0.151 0.849 39 H 0.142 0.858 40 H 0.061 0.939 41 H 0.109 0.891 42 H 0.034 0.966 43 H -0.019 1.019 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.116 0.884 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.077 8.076 -7.996 22.206 hybrid contribution 1.059 -0.151 0.935 1.421 sum -18.018 7.925 -7.061 20.912 Atomic orbital electron populations 1.20306 0.83896 1.04474 1.03843 1.22840 0.98493 0.90184 0.97396 1.21489 0.89348 1.01274 1.21636 1.20415 0.93169 0.84871 1.00300 1.65698 1.19137 1.05692 1.25805 1.24602 0.99367 0.85548 1.00677 1.22450 0.84028 0.95403 0.95959 1.24478 1.00597 0.96698 0.89539 1.23309 0.89089 0.99703 0.88963 1.88165 1.24122 1.78343 1.38492 1.22786 0.92493 0.97497 0.88956 1.22095 0.83782 0.79019 0.89110 1.90746 1.24288 1.62660 1.68989 1.47523 1.16092 1.47091 1.19911 1.21403 0.99318 0.94856 0.82757 1.19063 0.92979 0.92696 0.95115 1.21513 1.33330 1.08234 0.94006 0.92879 1.25786 0.96184 0.96937 1.00051 1.70102 1.40031 1.17280 1.29406 0.85542 0.77958 0.78333 0.80095 1.18865 1.20161 1.20695 1.48456 1.05714 1.04063 1.58023 1.21675 0.83412 0.94638 1.02974 1.77299 0.85858 1.24128 1.28731 0.89720 0.87722 0.91046 0.80006 0.87794 0.83986 0.87270 0.91716 0.87844 0.83215 0.84860 0.85798 0.93949 0.89074 0.96610 1.01867 0.93011 0.92086 0.88426 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.44 71.24 0.74 -0.22 16 2 C 0.08 1.86 7.21 43.08 0.31 2.17 16 3 C -0.31 -6.88 9.55 22.16 0.21 -6.67 16 4 C 0.23 6.78 6.08 131.43 0.80 7.58 16 5 N -0.44 -12.95 4.61 -719.18 -3.32 -16.27 16 6 C 0.03 0.52 6.17 86.24 0.53 1.05 16 7 C 0.11 2.55 1.56 5.16 0.01 2.55 16 8 C 0.01 0.41 6.15 86.25 0.53 0.94 16 9 C 0.07 0.94 6.09 71.91 0.44 1.38 16 10 O -0.37 -7.58 10.84 -148.98 -1.61 -9.20 16 11 C 0.06 1.39 6.94 71.10 0.49 1.88 16 12 C 0.47 16.52 7.61 87.60 0.67 17.19 16 13 O -0.59 -27.09 16.55 -3.03 -0.05 -27.14 16 14 N -0.58 -19.56 2.66 -785.55 -2.09 -21.65 16 15 C 0.14 5.98 4.41 86.38 0.38 6.36 16 16 C 0.04 2.15 5.06 29.85 0.15 2.30 16 17 C -0.53 -31.43 9.11 25.60 0.23 -31.20 16 18 H 0.05 3.06 7.74 -2.91 -0.02 3.03 16 19 C 0.01 0.49 5.46 84.65 0.46 0.95 16 20 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 21 Si 0.96 46.12 29.54 68.60 2.03 48.15 16 22 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 25 N -0.38 -12.50 4.02 -366.65 -1.47 -13.98 16 26 C 0.11 3.85 11.40 127.77 1.46 5.31 16 27 N -0.34 -10.57 12.56 -47.44 -0.60 -11.16 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.18 2.57 6.46 -2.91 -0.02 2.55 16 32 H 0.10 2.19 7.00 -2.38 -0.02 2.17 16 33 H 0.14 1.54 5.76 -2.39 -0.01 1.53 16 34 H 0.11 2.39 7.66 -2.38 -0.02 2.37 16 35 H 0.06 2.40 6.90 -2.39 -0.02 2.38 16 36 H 0.10 0.88 8.13 -2.39 -0.02 0.86 16 37 H 0.15 1.17 7.86 -2.39 -0.02 1.15 16 38 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.04 2.01 7.49 -2.39 -0.02 1.99 16 41 H 0.09 3.64 5.43 -2.39 -0.01 3.63 16 42 H 0.02 0.88 6.05 -2.39 -0.01 0.86 16 43 H -0.04 -2.39 8.14 -2.39 -0.02 -2.41 16 44 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 45 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16 47 H 0.08 2.77 7.70 -2.39 -0.02 2.76 16 Total: -1.00 -84.85 376.25 1.57 -83.27 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.99 Total: 13.65 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 7.42 Total: 11.57 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -7.19 Total: -120.31 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -1.67 Total: -36.34 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -84.85 1.57 -83.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273570769.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.345 kcal (2) G-P(sol) polarization free energy of solvation -84.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds