Wall clock time and date at job start Tue Mar 31 2020 18:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39774 * 125.83889 * 2 1 4 4 C 1.36170 * 107.81417 * 180.16659 * 3 2 1 5 5 N 1.39207 * 126.22477 * 179.84896 * 4 3 2 6 6 C 1.48066 * 110.99465 * 359.68769 * 5 4 3 7 7 C 1.53407 * 86.01704 * 222.77144 * 6 5 4 8 8 C 1.48065 * 111.00186 * 260.23765 * 5 4 3 9 9 C 1.52551 * 113.81482 * 268.71231 * 7 6 5 10 10 N 1.46277 * 109.56827 * 273.98190 * 9 7 6 11 11 C 1.46498 * 118.71442 * 163.94356 * 10 9 7 12 12 C 1.52994 * 109.47398 * 270.00010 * 11 10 9 13 13 C 1.50700 * 109.47573 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99712 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00407 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00020 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99999 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47304 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47254 * 119.99969 * 17 15 13 20 20 H 1.48500 * 109.47354 * 240.00075 * 17 15 13 21 21 C 1.33714 * 122.56614 * 343.94577 * 10 9 7 22 22 O 1.21286 * 118.37905 * 183.23015 * 21 10 9 23 23 C 1.50166 * 123.24083 * 3.20896 * 21 10 9 24 24 O 1.42691 * 113.75327 * 138.11268 * 7 6 5 25 25 N 1.35248 * 107.55816 * 359.58669 * 4 3 2 26 26 C 1.46505 * 126.04563 * 180.26534 * 25 4 3 27 27 N 1.30843 * 125.83992 * 179.70410 * 2 1 3 28 28 H 1.09001 * 109.47398 * 270.32199 * 1 2 3 29 29 H 1.09004 * 109.47604 * 30.32248 * 1 2 3 30 30 H 1.09004 * 109.47187 * 150.32457 * 1 2 3 31 31 H 1.07998 * 126.09421 * 0.02562 * 3 2 1 32 32 H 1.09004 * 113.78608 * 108.49907 * 6 5 4 33 33 H 1.09000 * 113.89102 * 337.06054 * 6 5 4 34 34 H 1.09003 * 113.78131 * 22.94574 * 8 5 4 35 35 H 1.09002 * 113.78189 * 251.50703 * 8 5 4 36 36 H 1.09005 * 109.45305 * 34.00758 * 9 7 6 37 37 H 1.08998 * 109.45673 * 153.95068 * 9 7 6 38 38 H 1.08995 * 109.47264 * 30.00294 * 11 10 9 39 39 H 1.09005 * 109.47040 * 149.99782 * 11 10 9 40 40 H 1.09007 * 109.46842 * 300.00094 * 12 11 10 41 41 H 1.08996 * 109.47503 * 59.99878 * 12 11 10 42 42 H 0.96994 * 120.00230 * 180.02562 * 16 15 13 43 43 H 1.09002 * 109.34867 * 222.13982 * 23 21 10 44 44 H 1.08994 * 109.23134 * 102.50913 * 23 21 10 45 45 H 1.09004 * 109.47096 * 89.99593 * 26 25 4 46 46 H 1.08997 * 109.47050 * 209.99893 * 26 25 4 47 47 H 1.09001 * 109.46481 * 329.99918 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1331 0.0000 4 6 3.6202 0.7118 -0.0038 5 7 4.7499 1.5251 -0.0080 6 6 4.3728 2.9569 -0.0155 7 6 5.4863 3.1345 -1.0557 8 6 5.3132 1.6438 -1.3722 9 6 6.8432 3.4832 -0.4520 10 7 6.9388 4.9308 -0.2650 11 6 7.9850 5.4594 0.6138 12 6 7.4488 5.5578 2.0433 13 6 8.5248 6.1021 2.9472 14 1 9.4941 6.3533 2.5424 15 6 8.2715 6.2806 4.2906 16 7 7.0908 5.9762 4.7833 17 14 9.6056 6.9547 5.4111 18 1 10.8331 7.2163 4.6174 19 1 9.1384 8.2207 6.0311 20 1 9.9056 5.9635 6.4754 21 6 6.1086 5.7904 -0.8648 22 8 6.2933 6.9782 -0.7034 23 6 4.9590 5.3578 -1.7287 24 8 5.1317 3.9973 -2.1355 25 7 3.6092 -0.6407 0.0033 26 6 4.7867 -1.5123 0.0078 27 7 2.2731 -1.0607 0.0055 28 1 -0.3634 0.0058 1.0276 29 1 -0.3634 0.8871 -0.5188 30 1 -0.3634 -0.8929 -0.5088 31 1 1.9904 2.1598 0.0004 32 1 4.5668 3.4676 0.9278 33 1 3.3728 3.1480 -0.4050 34 1 4.5920 1.4435 -2.1645 35 1 6.2545 1.1109 -1.5070 36 1 6.9508 2.9848 0.5115 37 1 7.6353 3.1507 -1.1229 38 1 8.8471 4.7928 0.5942 39 1 8.2834 6.4494 0.2687 40 1 6.5867 6.2246 2.0628 41 1 7.1504 4.5679 2.3884 42 1 6.9125 6.1021 5.7284 43 1 4.9108 5.9954 -2.6115 44 1 4.0310 5.4512 -1.1647 45 1 5.0788 -1.7231 1.0367 46 1 4.5492 -2.4464 -0.5011 47 1 5.6082 -1.0158 -0.5086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273571095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:00 Heat of formation + Delta-G solvation = 55.438856 kcal Electronic energy + Delta-G solvation = -29628.219830 eV Core-core repulsion = 25621.888768 eV Total energy + Delta-G solvation = -4006.331063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.22535 -40.84127 -39.18973 -36.88951 -35.47953 -34.11278 -33.09328 -31.42403 -30.12819 -29.67376 -28.48570 -27.39991 -26.71738 -25.75100 -25.09321 -24.56284 -21.87438 -20.69510 -20.11147 -19.80554 -18.30520 -18.05906 -17.08056 -16.70078 -16.26373 -16.12180 -15.84895 -15.35235 -15.08913 -14.82180 -14.58569 -14.46667 -14.04563 -13.74917 -13.69993 -13.47783 -13.41733 -13.06861 -12.95021 -12.70059 -12.59298 -12.51089 -12.31711 -12.20724 -12.15223 -11.64147 -11.37396 -11.11065 -10.95284 -10.71836 -10.68791 -10.31359 -10.11658 -9.94617 -9.91473 -9.36313 -9.05853 -8.98735 -8.51195 -8.38909 -8.17589 -6.03922 -4.06908 1.57114 2.14822 2.52388 2.80520 3.05887 3.28639 3.29841 3.37536 3.41432 3.47983 4.01021 4.19266 4.30147 4.43717 4.45104 4.67753 4.73056 4.88645 4.97995 4.99207 5.08577 5.11355 5.13719 5.22673 5.28987 5.32674 5.38835 5.41433 5.48203 5.55115 5.56905 5.59471 5.64146 5.71790 5.93133 6.03300 6.22816 6.48345 6.50756 6.57116 6.76050 6.81352 7.00104 7.53557 7.57951 7.65527 7.86136 7.95108 8.30871 8.44997 8.99357 9.57266 11.07527 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011941 B = 0.003158 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.288409 B = 8864.859360 C = 9988.143297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.084 3.916 3 C -0.301 4.301 4 C 0.244 3.756 5 N -0.420 5.420 6 C -0.003 4.003 7 C 0.073 3.927 8 C 0.035 3.965 9 C 0.115 3.885 10 N -0.597 5.597 11 C 0.112 3.888 12 C 0.015 3.985 13 C -0.520 4.520 14 H 0.057 0.943 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.894 3.106 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.480 3.520 22 O -0.538 6.538 23 C 0.051 3.949 24 O -0.356 6.356 25 N -0.366 5.366 26 C 0.105 3.895 27 N -0.295 5.295 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.150 0.850 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.020 0.980 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.129 0.871 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.101 -14.133 -14.735 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 C -0.332 4.332 4 C 0.021 3.979 5 N -0.141 5.141 6 C -0.131 4.131 7 C 0.032 3.968 8 C -0.092 4.092 9 C -0.008 4.008 10 N -0.329 5.329 11 C -0.008 4.008 12 C -0.023 4.023 13 C -0.559 4.559 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C 0.266 3.734 22 O -0.416 6.416 23 C -0.028 4.028 24 O -0.274 6.274 25 N -0.150 5.150 26 C -0.036 4.036 27 N -0.119 5.119 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.168 0.832 32 H 0.132 0.868 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.039 0.961 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.147 0.853 44 H 0.106 0.894 45 H 0.095 0.905 46 H 0.105 0.895 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.530 -15.218 -14.161 22.469 hybrid contribution 0.254 1.421 0.627 1.574 sum -8.275 -13.797 -13.533 21.024 Atomic orbital electron populations 1.20182 0.86592 1.03221 1.03075 1.22129 0.96900 0.90481 0.98677 1.21248 0.90742 1.00222 1.21014 1.19869 0.92188 0.84929 1.00866 1.65563 1.19526 1.04987 1.24064 1.24793 0.99525 0.86660 1.02171 1.23202 0.94732 0.90942 0.87971 1.24075 1.02072 0.92872 0.90153 1.21669 0.94581 0.82183 1.02394 1.47694 1.33288 1.05494 1.46463 1.21972 0.87972 0.99115 0.91780 1.19353 0.97158 0.97318 0.88423 1.21104 0.98623 1.43189 0.92974 0.92461 1.24989 0.95536 0.95472 0.98253 1.69971 1.21270 1.48338 1.13553 0.86508 0.81991 0.78689 0.80645 1.19668 1.20961 1.21007 1.20617 0.84460 0.86925 0.81364 1.90762 1.71871 1.16223 1.62767 1.22814 0.96643 0.82919 1.00454 1.88082 1.89756 1.17627 1.31927 1.48307 1.05830 1.03087 1.57736 1.21836 0.83733 0.94286 1.03737 1.77344 0.85450 1.22171 1.26935 0.90425 0.90381 0.90974 0.83247 0.86777 0.88216 0.88858 0.87223 0.88022 0.90557 0.91665 0.90370 0.96132 0.96570 0.93005 0.85313 0.89393 0.90492 0.89506 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.44 36.00 0.38 -0.20 16 2 C 0.08 0.99 7.21 -82.44 -0.59 0.39 16 3 C -0.30 -3.59 9.55 -39.75 -0.38 -3.97 16 4 C 0.24 2.97 6.08 -153.41 -0.93 2.04 16 5 N -0.42 -4.77 6.10 -179.21 -1.09 -5.86 16 6 C 0.00 -0.04 6.31 -2.98 -0.02 -0.06 16 7 C 0.07 0.82 1.21 -90.52 -0.11 0.71 16 8 C 0.04 0.33 6.96 -2.99 -0.02 0.31 16 9 C 0.12 1.52 5.75 -4.39 -0.03 1.49 16 10 N -0.60 -10.27 2.84 -174.68 -0.50 -10.77 16 11 C 0.11 2.31 5.26 -4.05 -0.02 2.29 16 12 C 0.02 0.39 5.29 -27.89 -0.15 0.24 16 13 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.48 8.42 7.58 -11.72 -0.09 8.33 16 22 O -0.54 -11.77 16.28 5.55 0.09 -11.68 16 23 C 0.05 0.64 6.67 35.75 0.24 0.88 16 24 O -0.36 -4.23 10.66 -35.23 -0.38 -4.60 16 25 N -0.37 -4.39 4.02 -67.24 -0.27 -4.66 16 26 C 0.11 0.87 11.40 59.85 0.68 1.55 16 27 N -0.30 -3.88 12.56 33.65 0.42 -3.45 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.15 1.56 6.46 -52.49 -0.34 1.22 16 32 H 0.11 1.59 8.09 -51.93 -0.42 1.17 16 33 H 0.10 1.04 5.81 -51.93 -0.30 0.74 16 34 H 0.09 0.85 7.91 -51.93 -0.41 0.44 16 35 H 0.11 0.79 8.09 -51.93 -0.42 0.37 16 36 H 0.10 1.42 7.98 -51.93 -0.41 1.00 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.23 8.04 -51.93 -0.42 0.81 16 39 H 0.08 1.75 7.19 -51.93 -0.37 1.38 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.13 1.39 8.14 -51.93 -0.42 0.96 16 44 H 0.09 0.99 7.92 -51.93 -0.41 0.58 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 0.57 7.70 -51.93 -0.40 0.17 16 LS Contribution 385.41 15.07 5.81 5.81 Total: -1.00 -35.56 385.41 -8.91 -44.47 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.25 Total: -0.54 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.45 Total: 0.69 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.70 Total: -50.76 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.29 Total: -16.28 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.56 -8.91 -44.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273571095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.904 kcal (2) G-P(sol) polarization free energy of solvation -35.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds