Wall clock time and date at job start Tue Mar 31 2020 18:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39774 * 125.83889 * 2 1 4 4 C 1.36170 * 107.81417 * 180.16659 * 3 2 1 5 5 N 1.39207 * 126.22477 * 179.84896 * 4 3 2 6 6 C 1.48066 * 110.99465 * 359.68769 * 5 4 3 7 7 C 1.53407 * 86.01704 * 222.77144 * 6 5 4 8 8 C 1.48065 * 111.00186 * 260.23765 * 5 4 3 9 9 C 1.52551 * 113.81482 * 268.71231 * 7 6 5 10 10 N 1.46277 * 109.56827 * 273.98190 * 9 7 6 11 11 C 1.46498 * 118.71442 * 163.94356 * 10 9 7 12 12 C 1.52994 * 109.47398 * 270.00010 * 11 10 9 13 13 C 1.50700 * 109.47573 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99712 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00407 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00020 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99999 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47304 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47254 * 119.99969 * 17 15 13 20 20 H 1.48500 * 109.47354 * 240.00075 * 17 15 13 21 21 C 1.33714 * 122.56614 * 343.94577 * 10 9 7 22 22 O 1.21286 * 118.37905 * 183.23015 * 21 10 9 23 23 C 1.50166 * 123.24083 * 3.20896 * 21 10 9 24 24 O 1.42691 * 113.75327 * 138.11268 * 7 6 5 25 25 N 1.35248 * 107.55816 * 359.58669 * 4 3 2 26 26 C 1.46505 * 126.04563 * 180.26534 * 25 4 3 27 27 N 1.30843 * 125.83992 * 179.70410 * 2 1 3 28 28 H 1.09001 * 109.47398 * 270.32199 * 1 2 3 29 29 H 1.09004 * 109.47604 * 30.32248 * 1 2 3 30 30 H 1.09004 * 109.47187 * 150.32457 * 1 2 3 31 31 H 1.07998 * 126.09421 * 0.02562 * 3 2 1 32 32 H 1.09004 * 113.78608 * 108.49907 * 6 5 4 33 33 H 1.09000 * 113.89102 * 337.06054 * 6 5 4 34 34 H 1.09003 * 113.78131 * 22.94574 * 8 5 4 35 35 H 1.09002 * 113.78189 * 251.50703 * 8 5 4 36 36 H 1.09005 * 109.45305 * 34.00758 * 9 7 6 37 37 H 1.08998 * 109.45673 * 153.95068 * 9 7 6 38 38 H 1.08995 * 109.47264 * 30.00294 * 11 10 9 39 39 H 1.09005 * 109.47040 * 149.99782 * 11 10 9 40 40 H 1.09007 * 109.46842 * 300.00094 * 12 11 10 41 41 H 1.08996 * 109.47503 * 59.99878 * 12 11 10 42 42 H 0.96994 * 120.00230 * 180.02562 * 16 15 13 43 43 H 1.09002 * 109.34867 * 222.13982 * 23 21 10 44 44 H 1.08994 * 109.23134 * 102.50913 * 23 21 10 45 45 H 1.09004 * 109.47096 * 89.99593 * 26 25 4 46 46 H 1.08997 * 109.47050 * 209.99893 * 26 25 4 47 47 H 1.09001 * 109.46481 * 329.99918 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1331 0.0000 4 6 3.6202 0.7118 -0.0038 5 7 4.7499 1.5251 -0.0080 6 6 4.3728 2.9569 -0.0155 7 6 5.4863 3.1345 -1.0557 8 6 5.3132 1.6438 -1.3722 9 6 6.8432 3.4832 -0.4520 10 7 6.9388 4.9308 -0.2650 11 6 7.9850 5.4594 0.6138 12 6 7.4488 5.5578 2.0433 13 6 8.5248 6.1021 2.9472 14 1 9.4941 6.3533 2.5424 15 6 8.2715 6.2806 4.2906 16 7 7.0908 5.9762 4.7833 17 14 9.6056 6.9547 5.4111 18 1 10.8331 7.2163 4.6174 19 1 9.1384 8.2207 6.0311 20 1 9.9056 5.9635 6.4754 21 6 6.1086 5.7904 -0.8648 22 8 6.2933 6.9782 -0.7034 23 6 4.9590 5.3578 -1.7287 24 8 5.1317 3.9973 -2.1355 25 7 3.6092 -0.6407 0.0033 26 6 4.7867 -1.5123 0.0078 27 7 2.2731 -1.0607 0.0055 28 1 -0.3634 0.0058 1.0276 29 1 -0.3634 0.8871 -0.5188 30 1 -0.3634 -0.8929 -0.5088 31 1 1.9904 2.1598 0.0004 32 1 4.5668 3.4676 0.9278 33 1 3.3728 3.1480 -0.4050 34 1 4.5920 1.4435 -2.1645 35 1 6.2545 1.1109 -1.5070 36 1 6.9508 2.9848 0.5115 37 1 7.6353 3.1507 -1.1229 38 1 8.8471 4.7928 0.5942 39 1 8.2834 6.4494 0.2687 40 1 6.5867 6.2246 2.0628 41 1 7.1504 4.5679 2.3884 42 1 6.9125 6.1021 5.7284 43 1 4.9108 5.9954 -2.6115 44 1 4.0310 5.4512 -1.1647 45 1 5.0788 -1.7231 1.0367 46 1 4.5492 -2.4464 -0.5011 47 1 5.6082 -1.0158 -0.5086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273571095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:59 Heat of formation + Delta-G solvation = 29.625139 kcal Electronic energy + Delta-G solvation = -29629.339197 eV Core-core repulsion = 25621.888768 eV Total energy + Delta-G solvation = -4007.450430 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.13301 -41.88351 -40.39836 -37.94640 -37.00989 -35.12998 -34.87697 -32.53398 -31.81345 -30.38656 -29.51612 -28.65218 -27.71358 -26.63529 -26.33813 -25.95922 -23.51713 -21.94115 -21.10293 -20.73235 -19.41855 -19.04528 -18.70022 -18.14288 -17.48524 -17.17340 -16.95365 -16.60941 -16.30076 -16.09835 -15.88569 -15.51510 -15.13466 -15.00761 -14.65465 -14.38612 -14.34740 -14.26234 -14.21244 -14.09530 -13.72759 -13.57000 -13.33718 -13.20146 -13.02545 -12.94419 -12.89135 -12.65649 -12.56901 -12.15156 -11.90832 -11.85321 -11.57427 -11.42573 -11.29966 -10.98699 -10.60218 -10.49125 -9.81611 -9.69749 -9.39447 -8.23731 -6.35506 0.70528 1.34511 1.38423 1.39732 1.46512 1.52976 1.66912 1.83375 2.28776 2.40160 2.59590 3.08185 3.10345 3.14393 3.49185 3.56482 3.64342 3.86062 4.12051 4.15256 4.22678 4.26732 4.32921 4.37598 4.41233 4.43603 4.50012 4.50834 4.58656 4.60114 4.67300 4.69701 4.73970 4.82296 4.87048 4.91290 5.02993 5.12965 5.17040 5.38593 5.43702 5.55468 5.65848 5.71717 5.80223 6.15846 6.17418 6.40834 6.72007 6.79498 7.04640 7.34037 8.88349 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011941 B = 0.003158 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.288409 B = 8864.859360 C = 9988.143297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.076 3.924 3 C -0.317 4.317 4 C 0.236 3.764 5 N -0.427 5.427 6 C -0.004 4.004 7 C 0.075 3.925 8 C 0.051 3.949 9 C 0.112 3.888 10 N -0.599 5.599 11 C 0.127 3.873 12 C 0.029 3.971 13 C -0.542 4.542 14 H 0.064 0.936 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.967 3.033 18 H -0.259 1.259 19 H -0.282 1.282 20 H -0.275 1.275 21 C 0.470 3.530 22 O -0.591 6.591 23 C 0.063 3.937 24 O -0.347 6.347 25 N -0.373 5.373 26 C 0.097 3.903 27 N -0.324 5.324 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.158 0.842 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.138 0.862 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.058 0.942 40 H -0.024 1.024 41 H 0.000 1.000 42 H 0.263 0.737 43 H 0.153 0.847 44 H 0.105 0.895 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.501 -15.288 -16.055 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.090 4.090 3 C -0.349 4.349 4 C 0.013 3.987 5 N -0.149 5.149 6 C -0.132 4.132 7 C 0.034 3.966 8 C -0.076 4.076 9 C -0.010 4.010 10 N -0.330 5.330 11 C 0.005 3.995 12 C -0.008 4.008 13 C -0.580 4.580 14 H 0.083 0.917 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.183 1.183 19 H -0.208 1.208 20 H -0.200 1.200 21 C 0.259 3.741 22 O -0.473 6.473 23 C -0.016 4.016 24 O -0.264 6.264 25 N -0.156 5.156 26 C -0.043 4.043 27 N -0.148 5.148 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.176 0.824 32 H 0.102 0.898 33 H 0.132 0.868 34 H 0.120 0.880 35 H 0.156 0.844 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.076 0.924 40 H -0.006 1.006 41 H 0.018 0.982 42 H 0.072 0.928 43 H 0.171 0.829 44 H 0.122 0.878 45 H 0.094 0.906 46 H 0.118 0.882 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.927 -16.428 -15.509 23.942 hybrid contribution 0.043 1.752 1.065 2.051 sum -7.884 -14.676 -14.444 22.049 Atomic orbital electron populations 1.20302 0.84424 1.04395 1.03804 1.22689 0.98429 0.90076 0.97757 1.21507 0.91001 1.00852 1.21524 1.20031 0.92493 0.85306 1.00887 1.65579 1.19315 1.04417 1.25578 1.24739 1.00517 0.87031 1.00945 1.23165 0.93337 0.92275 0.87807 1.24143 1.03337 0.90903 0.89173 1.21917 0.96897 0.79372 1.02860 1.47723 1.32415 1.07452 1.45428 1.21504 0.89450 0.99117 0.89417 1.19126 0.95214 0.94947 0.91562 1.21561 0.99398 1.43253 0.93814 0.91748 1.25965 0.97967 0.95636 1.00068 1.70107 1.23467 1.49427 1.14089 0.85371 0.79147 0.77905 0.78458 1.18316 1.20789 1.20006 1.21616 0.85009 0.86235 0.81230 1.90732 1.73256 1.18500 1.64772 1.22815 0.94542 0.83665 1.00604 1.88113 1.89562 1.16996 1.31741 1.48593 1.06219 1.03348 1.57436 1.22100 0.83241 0.94752 1.04199 1.77294 0.86254 1.23133 1.28147 0.89818 0.88672 0.90331 0.82412 0.89801 0.86850 0.87977 0.84442 0.88995 0.87615 0.89286 0.92366 1.00608 0.98168 0.92794 0.82926 0.87755 0.90586 0.88191 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.44 71.23 0.74 -0.30 16 2 C 0.08 1.72 7.21 43.08 0.31 2.03 16 3 C -0.32 -7.29 9.55 22.16 0.21 -7.07 16 4 C 0.24 5.46 6.08 131.43 0.80 6.26 16 5 N -0.43 -9.09 6.10 -725.16 -4.43 -13.52 16 6 C 0.00 -0.09 6.31 86.21 0.54 0.46 16 7 C 0.08 1.55 1.21 -10.65 -0.01 1.54 16 8 C 0.05 0.79 6.96 86.20 0.60 1.39 16 9 C 0.11 2.77 5.75 86.27 0.50 3.27 16 10 N -0.60 -20.59 2.84 -825.53 -2.34 -22.94 16 11 C 0.13 5.35 5.26 86.38 0.45 5.81 16 12 C 0.03 1.57 5.29 29.85 0.16 1.73 16 13 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 14 H 0.06 3.51 7.74 -2.91 -0.02 3.48 16 15 C 0.00 0.10 5.46 84.65 0.46 0.56 16 16 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 17 Si 0.97 44.59 29.54 68.60 2.03 46.61 16 18 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 21 C 0.47 16.55 7.58 87.66 0.66 17.21 16 22 O -0.59 -26.67 16.28 -3.05 -0.05 -26.72 16 23 C 0.06 1.47 6.67 71.07 0.47 1.94 16 24 O -0.35 -7.28 10.66 -148.98 -1.59 -8.87 16 25 N -0.37 -8.50 4.02 -366.64 -1.47 -9.97 16 26 C 0.10 1.45 11.40 127.77 1.46 2.91 16 27 N -0.32 -8.25 12.56 -47.45 -0.60 -8.85 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.04 8.14 -2.38 -0.02 1.03 16 30 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.16 3.16 6.46 -2.91 -0.02 3.14 16 32 H 0.08 2.43 8.09 -2.39 -0.02 2.41 16 33 H 0.11 2.24 5.81 -2.39 -0.01 2.22 16 34 H 0.10 1.50 7.91 -2.39 -0.02 1.48 16 35 H 0.14 1.40 8.09 -2.39 -0.02 1.38 16 36 H 0.09 2.50 7.98 -2.38 -0.02 2.48 16 37 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.09 3.29 8.04 -2.39 -0.02 3.27 16 39 H 0.06 2.69 7.19 -2.38 -0.02 2.67 16 40 H -0.02 -1.51 8.14 -2.38 -0.02 -1.53 16 41 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 43 H 0.15 2.92 8.14 -2.39 -0.02 2.90 16 44 H 0.10 2.18 7.92 -2.39 -0.02 2.16 16 45 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 46 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.10 1.13 7.70 -2.39 -0.02 1.11 16 Total: -1.00 -79.84 385.41 0.40 -79.44 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.97 Total: 14.79 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 7.59 Total: 6.96 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -8.55 Total: -112.22 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -1.64 Total: -35.59 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -79.84 0.40 -79.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273571095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.064 kcal (2) G-P(sol) polarization free energy of solvation -79.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds