Wall clock time and date at job start Tue Mar 31 2020 19:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 110.28497 * 2 1 4 4 C 1.54377 * 110.32527 * 237.77169 * 2 1 3 5 5 N 1.48567 * 104.59159 * 264.95248 * 4 2 1 6 6 C 1.46900 * 110.99718 * 200.95714 * 5 4 2 7 7 C 1.50707 * 109.46999 * 189.99963 * 6 5 4 8 8 O 1.21291 * 119.99777 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00164 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99968 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99994 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99809 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99514 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00051 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47160 * 89.99775 * 14 12 10 16 16 H 1.48503 * 109.46952 * 210.00049 * 14 12 10 17 17 H 1.48504 * 109.47057 * 329.99750 * 14 12 10 18 18 C 1.48720 * 104.28820 * 320.57327 * 5 4 2 19 19 C 1.54257 * 110.32776 * 122.12741 * 2 1 3 20 20 H 1.09002 * 110.32715 * 237.79589 * 19 2 1 21 21 N 1.46496 * 110.32272 * 359.90194 * 19 2 1 22 22 C 1.34775 * 120.00429 * 203.57234 * 21 19 2 23 23 O 1.21634 * 119.99577 * 359.97438 * 22 21 19 24 24 C 1.47255 * 120.00649 * 180.02562 * 22 21 19 25 25 C 1.46687 * 126.94737 * 180.02562 * 24 22 21 26 26 C 1.34485 * 106.33524 * 179.97438 * 25 24 22 27 27 N 1.36445 * 108.85462 * 359.97438 * 26 25 24 28 28 H 0.97002 * 124.84993 * 179.97438 * 27 26 25 29 29 C 1.34656 * 110.30004 * 359.74889 * 27 26 25 30 30 H 1.08999 * 109.46687 * 297.86955 * 1 2 3 31 31 H 1.08998 * 109.47195 * 57.86846 * 1 2 3 32 32 H 1.08993 * 109.46417 * 177.86969 * 1 2 3 33 33 H 1.09005 * 109.46832 * 182.12598 * 3 2 1 34 34 H 1.09000 * 109.47232 * 302.13080 * 3 2 1 35 35 H 1.08999 * 109.46754 * 62.13148 * 3 2 1 36 36 H 1.08999 * 110.41555 * 23.73124 * 4 2 1 37 37 H 1.09004 * 110.41760 * 146.05797 * 4 2 1 38 38 H 1.08997 * 109.47620 * 310.00301 * 6 5 4 39 39 H 1.08999 * 109.47148 * 70.00734 * 6 5 4 40 40 H 0.97001 * 119.99817 * 359.97438 * 9 7 6 41 41 H 0.97000 * 119.99628 * 180.02562 * 13 12 10 42 42 H 1.09004 * 110.38960 * 280.64066 * 18 5 4 43 43 H 1.08996 * 110.50963 * 158.14509 * 18 5 4 44 44 H 0.97007 * 120.00255 * 23.56988 * 21 19 2 45 45 H 1.07999 * 126.83355 * 359.94501 * 25 24 22 46 46 H 1.07996 * 125.57387 * 179.97438 * 26 25 24 47 47 H 1.08004 * 125.80186 * 180.29135 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0605 1.4352 0.0000 4 6 2.0662 -0.7720 -1.2246 5 7 2.3149 -2.1473 -0.7206 6 6 3.2651 -2.8607 -1.5844 7 6 3.3060 -4.3153 -1.1922 8 8 2.6116 -4.7180 -0.2829 9 7 4.1142 -5.1686 -1.8518 10 6 4.1511 -6.4919 -1.4953 11 1 3.5328 -6.8505 -0.6857 12 6 4.9840 -7.3717 -2.1757 13 7 5.0196 -8.6400 -1.8337 14 14 6.0540 -6.7513 -3.5756 15 1 7.3675 -6.3141 -3.0384 16 1 6.2607 -7.8424 -4.5616 17 1 5.3842 -5.6043 -4.2397 18 6 2.8802 -1.9430 0.6397 19 6 2.0659 -0.7693 1.2250 20 1 2.7082 -0.1250 1.8254 21 7 0.9544 -1.2748 2.0344 22 6 1.1407 -1.5441 3.3418 23 8 2.2319 -1.3678 3.8495 24 6 0.0237 -2.0528 4.1554 25 6 0.0554 -2.3935 5.5818 26 6 -1.1825 -2.8132 5.8980 27 7 -1.9660 -2.7558 4.7824 28 1 -2.9024 -3.0068 4.7492 29 6 -1.2549 -2.2964 3.7352 30 1 -0.3633 0.4804 0.9085 31 1 -0.3633 0.5466 -0.8702 32 1 -0.3632 -1.0269 -0.0382 33 1 3.1498 1.4199 -0.0381 34 1 1.6738 1.9655 -0.8703 35 1 1.7358 1.9425 0.9085 36 1 1.3214 -0.7876 -2.0202 37 1 2.9930 -0.3227 -1.5814 38 1 2.9478 -2.7734 -2.6235 39 1 4.2578 -2.4255 -1.4697 40 1 4.6693 -4.8465 -2.5792 41 1 5.6013 -9.2542 -2.3084 42 1 3.9359 -1.6791 0.5766 43 1 2.7469 -2.8383 1.2471 44 1 0.0843 -1.4157 1.6295 45 1 0.9041 -2.3221 6.2458 46 1 -1.5040 -3.1419 6.8752 47 1 -1.6299 -2.1479 2.7333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276586316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:38 Heat of formation + Delta-G solvation = -36.207012 kcal Electronic energy + Delta-G solvation = -29229.565440 eV Core-core repulsion = 25219.260314 eV Total energy + Delta-G solvation = -4010.305126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.06634 -41.31111 -40.14316 -39.17425 -36.17668 -35.56746 -34.28040 -33.74034 -32.00210 -30.75644 -29.83355 -28.72284 -28.02231 -26.64718 -25.24217 -23.88384 -22.34615 -21.48490 -21.28276 -20.69668 -20.26808 -19.95762 -19.38778 -17.88099 -17.40279 -17.17098 -16.78681 -16.54027 -16.24120 -15.78072 -15.33980 -15.19655 -14.99557 -14.81466 -14.73142 -14.56997 -14.51598 -14.23417 -13.99318 -13.90138 -13.78068 -13.37577 -13.25058 -13.02938 -12.95289 -12.79048 -12.49144 -12.45946 -12.40827 -11.98713 -11.83283 -11.71183 -11.55511 -11.49112 -10.98092 -10.40296 -10.24342 -10.08762 -9.70631 -9.36724 -9.29153 -8.41550 -6.02242 0.79195 1.28691 1.35045 1.43622 1.54490 1.97784 2.22627 2.25381 2.49915 2.61885 2.65962 3.14052 3.23814 3.47554 3.63464 4.01151 4.05909 4.09482 4.13605 4.23966 4.29157 4.37174 4.38742 4.42383 4.45816 4.52870 4.68010 4.79294 4.83961 4.88211 4.94405 5.01538 5.06264 5.10503 5.11150 5.24306 5.35995 5.46025 5.52715 5.56760 5.72914 5.84493 5.91800 5.94512 6.04297 6.60295 6.65186 6.73712 6.89030 7.38308 7.40425 7.99398 8.76573 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011378 B = 0.003163 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.220877 B = 8849.972029 C =10576.184024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 C -0.133 4.133 4 C 0.039 3.961 5 N -0.500 5.500 6 C 0.042 3.958 7 C 0.450 3.550 8 O -0.607 6.607 9 N -0.594 5.594 10 C -0.327 4.327 11 H 0.051 0.949 12 C -0.017 4.017 13 N -0.937 5.937 14 Si 0.967 3.033 15 H -0.260 1.260 16 H -0.273 1.273 17 H -0.228 1.228 18 C 0.030 3.970 19 C 0.155 3.845 20 H 0.083 0.917 21 N -0.702 5.702 22 C 0.579 3.421 23 O -0.603 6.603 24 C -0.273 4.273 25 C -0.189 4.189 26 C -0.001 4.001 27 N -0.534 5.534 28 H 0.438 0.562 29 C 0.067 3.933 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.127 0.873 39 H 0.078 0.922 40 H 0.389 0.611 41 H 0.279 0.721 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.411 0.589 45 H 0.130 0.870 46 H 0.206 0.794 47 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.757 23.597 2.577 27.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.066 4.066 3 C -0.191 4.191 4 C -0.088 4.088 5 N -0.224 5.224 6 C -0.090 4.090 7 C 0.238 3.762 8 O -0.490 6.490 9 N -0.236 5.236 10 C -0.456 4.456 11 H 0.069 0.931 12 C -0.215 4.215 13 N -0.578 5.578 14 Si 0.786 3.214 15 H -0.184 1.184 16 H -0.198 1.198 17 H -0.152 1.152 18 C -0.100 4.100 19 C 0.049 3.951 20 H 0.101 0.899 21 N -0.355 5.355 22 C 0.369 3.631 23 O -0.486 6.486 24 C -0.284 4.284 25 C -0.213 4.213 26 C -0.129 4.129 27 N -0.130 5.130 28 H 0.279 0.721 29 C -0.071 4.071 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.145 0.855 39 H 0.095 0.905 40 H 0.225 0.775 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.251 0.749 45 H 0.148 0.852 46 H 0.223 0.777 47 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -15.042 22.875 3.532 27.604 hybrid contribution 1.286 -0.669 -0.471 1.524 sum -13.756 22.205 3.061 26.299 Atomic orbital electron populations 1.21824 0.92175 1.02173 1.03456 1.21549 0.97897 0.95553 0.91573 1.21859 1.00970 0.93038 1.03222 1.23464 1.01573 0.86355 0.97449 1.65053 1.40418 1.15839 1.01071 1.22041 0.97097 0.89920 0.99896 1.20965 0.81844 0.89176 0.84206 1.90547 1.45572 1.79661 1.33228 1.42025 1.40389 1.07749 1.33482 1.18976 1.24821 0.84182 1.17669 0.93093 1.26138 0.98941 0.94917 1.01510 1.69814 1.40056 1.04629 1.43258 0.85343 0.78810 0.79664 0.77556 1.18429 1.19841 1.15163 1.23456 0.96561 0.98357 0.91598 1.21700 0.88162 0.93217 0.92067 0.89927 1.45926 1.14742 1.66522 1.08288 1.17970 0.87245 0.75856 0.81993 1.90701 1.28209 1.56025 1.73640 1.20547 0.94376 1.17262 0.96199 1.22095 0.98372 1.06890 0.93931 1.22222 0.90447 1.06957 0.93305 1.41623 1.13574 1.50078 1.07678 0.72100 1.22274 0.90675 0.99665 0.94500 0.91468 0.89709 0.92486 0.92571 0.89734 0.92215 0.87758 0.91770 0.85495 0.90456 0.77539 0.91177 0.93846 0.93799 0.74885 0.85219 0.77691 0.78131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 7.08 71.98 0.51 -1.39 16 2 C -0.06 -1.16 1.03 -51.28 -0.05 -1.21 16 3 C -0.13 -1.79 8.25 71.99 0.59 -1.20 16 4 C 0.04 0.76 5.55 86.45 0.48 1.24 16 5 N -0.50 -15.34 4.98 -885.57 -4.41 -19.74 16 6 C 0.04 1.35 5.32 85.56 0.46 1.80 16 7 C 0.45 21.42 7.63 87.66 0.67 22.09 16 8 O -0.61 -35.49 14.80 -3.06 -0.05 -35.54 16 9 N -0.59 -29.21 5.09 -306.98 -1.56 -30.78 16 10 C -0.33 -19.91 10.16 84.04 0.85 -19.06 16 11 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 12 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 13 N -0.94 -58.08 13.96 21.66 0.30 -57.78 16 14 Si 0.97 39.89 27.74 68.60 1.90 41.79 16 15 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 17 H -0.23 -7.86 6.52 99.48 0.65 -7.21 16 18 C 0.03 1.03 5.65 86.42 0.49 1.52 16 19 C 0.15 4.21 3.01 45.89 0.14 4.35 16 20 H 0.08 2.44 7.17 -2.39 -0.02 2.43 16 21 N -0.70 -19.22 4.54 -441.72 -2.01 -21.23 16 22 C 0.58 19.72 7.81 86.61 0.68 20.40 16 23 O -0.60 -26.00 16.64 -4.14 -0.07 -26.07 16 24 C -0.27 -7.66 6.29 -19.04 -0.12 -7.78 16 25 C -0.19 -4.96 10.97 23.62 0.26 -4.70 16 26 C 0.00 -0.01 11.89 83.12 0.99 0.97 16 27 N -0.53 -6.81 5.90 -194.56 -1.15 -7.96 16 28 H 0.44 1.90 8.96 -92.71 -0.83 1.07 16 29 C 0.07 1.20 11.40 83.92 0.96 2.16 16 30 H 0.07 0.83 7.73 -2.39 -0.02 0.81 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.91 6.99 -2.39 -0.02 0.90 16 33 H 0.06 0.80 8.10 -2.38 -0.02 0.78 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 1.68 7.86 -2.39 -0.02 1.66 16 37 H 0.06 1.06 7.69 -2.39 -0.02 1.04 16 38 H 0.13 3.18 8.08 -2.39 -0.02 3.16 16 39 H 0.08 2.14 7.77 -2.39 -0.02 2.12 16 40 H 0.39 15.77 5.76 -92.71 -0.53 15.24 16 41 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 42 H 0.04 1.47 7.75 -2.38 -0.02 1.46 16 43 H 0.04 2.04 7.16 -2.39 -0.02 2.02 16 44 H 0.41 8.89 4.79 -92.70 -0.44 8.45 16 45 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 46 H 0.21 1.73 8.06 -2.91 -0.02 1.70 16 47 H 0.20 2.15 7.45 -2.91 -0.02 2.12 16 Total: -1.00 -95.65 381.44 -0.52 -96.17 By element: Atomic # 1 Polarization: 43.30 SS G_CDS: -0.85 Total: 42.45 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 7.36 Total: 18.68 kcal Atomic # 7 Polarization: -128.67 SS G_CDS: -8.82 Total: -137.49 kcal Atomic # 8 Polarization: -61.49 SS G_CDS: -0.11 Total: -61.60 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.90 Total: 41.79 kcal Total: -95.65 -0.52 -96.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276586316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.959 kcal (2) G-P(sol) polarization free energy of solvation -95.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds