Wall clock time and date at job start Tue Mar 31 2020 19:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30171 * 126.80591 * 2 1 4 4 O 1.20905 * 111.73846 * 179.97438 * 3 2 1 5 5 C 1.34284 * 111.63121 * 0.02562 * 4 3 2 6 6 C 1.50696 * 126.82279 * 179.97438 * 5 4 3 7 7 C 1.35863 * 106.35832 * 359.97438 * 5 4 3 8 8 N 1.40777 * 128.05702 * 180.02562 * 7 5 4 9 9 C 1.34774 * 119.99699 * 210.49124 * 8 7 5 10 10 O 1.21604 * 120.00283 * 5.35067 * 9 8 7 11 11 N 1.34775 * 120.00123 * 185.34990 * 9 8 7 12 12 C 1.47250 * 126.69597 * 359.69206 * 11 9 8 13 13 C 1.54038 * 106.08278 * 148.28649 * 12 11 9 14 14 H 1.08997 * 112.91776 * 257.47015 * 13 12 11 15 15 C 1.54438 * 109.06100 * 132.34496 * 13 12 11 16 16 C 1.54921 * 102.96579 * 225.11377 * 15 13 12 17 17 N 1.48480 * 103.21637 * 37.73234 * 16 15 13 18 18 C 1.46903 * 110.99614 * 200.11006 * 17 16 15 19 19 C 1.50697 * 109.47215 * 287.62062 * 18 17 16 20 20 H 1.08007 * 120.00010 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99947 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00192 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00069 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47401 * 89.99683 * 23 21 19 25 25 H 1.48500 * 109.47056 * 210.00006 * 23 21 19 26 26 H 1.48504 * 109.47053 * 329.99597 * 23 21 19 27 27 C 1.47902 * 106.00095 * 320.73585 * 17 16 15 28 28 H 1.08996 * 111.57946 * 261.94685 * 27 17 16 29 29 C 1.47184 * 126.70359 * 179.97438 * 11 9 8 30 30 H 1.09001 * 109.47557 * 84.47829 * 1 2 3 31 31 H 1.09000 * 109.47223 * 204.47556 * 1 2 3 32 32 H 1.09001 * 109.47315 * 324.47787 * 1 2 3 33 33 H 1.08999 * 109.47234 * 355.03781 * 6 5 4 34 34 H 1.09004 * 109.47404 * 115.03756 * 6 5 4 35 35 H 1.09001 * 109.47217 * 235.03554 * 6 5 4 36 36 H 0.96998 * 120.00328 * 30.48239 * 8 7 5 37 37 H 1.08995 * 110.09601 * 267.56623 * 12 11 9 38 38 H 1.08996 * 110.10330 * 29.17619 * 12 11 9 39 39 H 1.09003 * 110.71481 * 106.74737 * 15 13 12 40 40 H 1.08996 * 110.87153 * 343.55702 * 15 13 12 41 41 H 1.08994 * 110.67143 * 279.29866 * 16 15 13 42 42 H 1.08998 * 110.80838 * 156.23101 * 16 15 13 43 43 H 1.08991 * 109.46988 * 47.62661 * 18 17 16 44 44 H 1.09004 * 109.46287 * 167.62181 * 18 17 16 45 45 H 0.96996 * 120.00116 * 180.02562 * 22 21 19 46 46 H 1.08998 * 110.05301 * 330.15154 * 29 11 9 47 47 H 1.08997 * 110.05437 * 91.59462 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0422 0.0000 4 8 3.4543 0.7279 0.0005 5 6 3.6078 -0.6061 0.0004 6 6 4.9095 -1.3655 0.0003 7 6 2.3565 -1.1353 0.0003 8 7 1.9889 -2.4942 0.0006 9 6 0.8422 -2.8822 -0.5918 10 8 0.1740 -2.0759 -1.2100 11 7 0.4359 -4.1639 -0.4990 12 6 1.1284 -5.2579 0.2023 13 6 0.0245 -6.2004 0.7179 14 1 -0.1717 -6.0814 1.7835 15 6 0.3954 -7.6558 0.3584 16 6 -0.9355 -8.2284 -0.1901 17 7 -1.5102 -7.0868 -0.9459 18 6 -2.9564 -7.2582 -1.1390 19 6 -3.2024 -8.3432 -2.1555 20 1 -2.3679 -8.8547 -2.6121 21 6 -4.4927 -8.6829 -2.5026 22 7 -5.5089 -8.0598 -1.9471 23 14 -4.7977 -10.0283 -3.7621 24 1 -4.9030 -11.3386 -3.0712 25 1 -6.0623 -9.7487 -4.4887 26 1 -3.6702 -10.0671 -4.7278 27 6 -1.2222 -5.8793 -0.1419 28 1 -2.0794 -5.5878 0.4649 29 6 -0.7835 -4.7447 -1.0839 30 1 -0.3634 0.0989 -1.0229 31 1 -0.3634 -0.9353 0.4258 32 1 -0.3634 0.8364 0.5971 33 1 5.7392 -0.6642 -0.0885 34 1 5.0042 -1.9244 0.9314 35 1 4.9266 -2.0572 -0.8419 36 1 2.5610 -3.1513 0.4270 37 1 1.7855 -5.7880 -0.4870 38 1 1.7037 -4.8616 1.0390 39 1 0.7139 -8.2030 1.2457 40 1 1.1707 -7.6811 -0.4073 41 1 -1.5950 -8.5196 0.6273 42 1 -0.7495 -9.0738 -0.8526 43 1 -3.4190 -7.5358 -0.1920 44 1 -3.3887 -6.3227 -1.4942 45 1 -6.4167 -8.2990 -2.1910 46 1 -1.5652 -3.9877 -1.1464 47 1 -0.5692 -5.1433 -2.0755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277940841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:28 Heat of formation + Delta-G solvation = 55.647204 kcal Electronic energy + Delta-G solvation = -29244.630929 eV Core-core repulsion = 25238.308901 eV Total energy + Delta-G solvation = -4006.322028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.06380 -40.69542 -39.12681 -36.02960 -35.43587 -34.07087 -33.10585 -32.56324 -31.51547 -29.45097 -28.63210 -27.86396 -27.71084 -25.76498 -24.28555 -22.57995 -22.34502 -21.02483 -20.58657 -19.90899 -19.40681 -18.28711 -17.76112 -17.70581 -16.46131 -16.17723 -16.06608 -15.45431 -15.12443 -14.52689 -14.47603 -14.24458 -14.01311 -13.67895 -13.52713 -13.29810 -13.18527 -12.99636 -12.83119 -12.56433 -12.41640 -12.37872 -12.25020 -11.72893 -11.59129 -11.42085 -11.14139 -11.00283 -10.88204 -10.67002 -10.57657 -10.47688 -10.41090 -10.10281 -9.89267 -9.73967 -9.26445 -8.82831 -8.49296 -8.46528 -7.54538 -6.07587 -4.09370 1.19506 1.97590 2.18419 2.96462 3.09458 3.28659 3.35598 3.39473 3.65845 4.18467 4.22359 4.36328 4.42041 4.55635 4.70200 4.74069 4.95768 4.97295 5.00831 5.14031 5.23463 5.29448 5.35599 5.48247 5.48701 5.50957 5.58901 5.69561 5.70125 5.80126 5.84101 5.93372 6.05437 6.12239 6.18296 6.21142 6.30841 6.32578 6.45669 6.54202 6.77411 7.06928 7.19946 7.68437 7.73112 7.90785 8.07313 8.12638 8.35535 8.41651 8.98045 9.55401 11.03379 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021501 B = 0.002456 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.980087 B =11395.610862 C =12133.161359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.038 3.962 3 N -0.361 5.361 4 O 0.103 5.897 5 C -0.073 4.073 6 C -0.068 4.068 7 C 0.063 3.937 8 N -0.654 5.654 9 C 0.721 3.279 10 O -0.563 6.563 11 N -0.627 5.627 12 C 0.111 3.889 13 C -0.108 4.108 14 H 0.088 0.912 15 C -0.118 4.118 16 C 0.050 3.950 17 N -0.506 5.506 18 C 0.184 3.816 19 C -0.507 4.507 20 H 0.063 0.937 21 C 0.055 3.945 22 N -0.898 5.898 23 Si 0.898 3.102 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.273 1.273 27 C 0.055 3.945 28 H 0.067 0.933 29 C 0.139 3.861 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.409 0.591 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.081 0.919 43 H -0.005 1.005 44 H 0.031 0.969 45 H 0.262 0.738 46 H 0.076 0.924 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.537 8.888 8.941 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.123 4.123 3 N -0.068 5.068 4 O 0.040 5.960 5 C -0.140 4.140 6 C -0.125 4.125 7 C -0.037 4.037 8 N -0.306 5.306 9 C 0.424 3.576 10 O -0.439 6.439 11 N -0.364 5.364 12 C -0.013 4.013 13 C -0.128 4.128 14 H 0.106 0.894 15 C -0.156 4.156 16 C -0.078 4.078 17 N -0.231 5.231 18 C 0.059 3.941 19 C -0.546 4.546 20 H 0.081 0.919 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.726 3.274 24 H -0.208 1.208 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.055 4.055 28 H 0.085 0.915 29 C 0.016 3.984 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.245 0.755 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.057 0.943 42 H 0.100 0.900 43 H 0.012 0.988 44 H 0.049 0.951 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 19.805 10.898 7.927 23.955 hybrid contribution -0.586 -2.045 0.381 2.161 sum 19.220 8.853 8.308 22.733 Atomic orbital electron populations 1.20202 0.84923 1.02322 1.03837 1.23457 0.99413 0.87119 1.02285 1.73814 0.89160 1.23399 1.20393 1.84853 1.21393 1.21123 1.68655 1.23750 0.96861 0.84404 1.08967 1.20249 0.90048 0.98608 1.03607 1.17811 0.91650 0.85394 1.08869 1.41727 1.24148 1.04652 1.60088 1.15249 0.80727 0.81476 0.80164 1.91011 1.56178 1.50658 1.46065 1.47674 1.26286 1.06073 1.56338 1.22284 0.95203 0.88058 0.95713 1.22795 0.94809 0.95593 0.99618 0.89364 1.22661 0.98880 0.93703 1.00394 1.23052 0.93102 0.95360 0.96255 1.64858 1.18363 0.99327 1.40529 1.19922 0.80406 0.97765 0.96021 1.21088 0.91948 1.18549 1.22977 0.91891 1.24989 0.96107 0.96840 0.96661 1.69948 0.98695 1.41746 1.43365 0.86499 0.77711 0.81785 0.81431 1.20759 1.21246 1.19755 1.23091 0.95935 0.93471 0.93044 0.91494 1.22011 0.84660 0.94300 0.97382 0.89264 0.90201 0.92090 0.89574 0.89645 0.89489 0.75473 0.90664 0.91676 0.91522 0.90742 0.94260 0.90025 0.98758 0.95103 0.92860 0.90512 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 8.43 36.00 0.30 -0.44 16 2 C 0.04 0.52 7.02 -81.94 -0.58 -0.05 16 3 N -0.36 -4.98 12.06 33.56 0.40 -4.58 16 4 O 0.10 1.21 11.20 16.53 0.19 1.39 16 5 C -0.07 -0.70 7.51 -35.16 -0.26 -0.96 16 6 C -0.07 -0.32 10.45 36.00 0.38 0.05 16 7 C 0.06 0.74 6.79 -83.24 -0.57 0.17 16 8 N -0.65 -6.92 5.42 -13.99 -0.08 -7.00 16 9 C 0.72 9.99 7.83 -86.92 -0.68 9.31 16 10 O -0.56 -9.69 12.12 5.27 0.06 -9.62 16 11 N -0.63 -8.16 3.32 -177.10 -0.59 -8.74 16 12 C 0.11 1.09 6.31 -3.09 -0.02 1.07 16 13 C -0.11 -1.27 4.01 -88.37 -0.35 -1.63 16 14 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 15 C -0.12 -1.40 6.59 -24.96 -0.16 -1.56 16 16 C 0.05 0.84 6.11 -1.94 -0.01 0.83 16 17 N -0.51 -9.85 4.67 -223.02 -1.04 -10.89 16 18 C 0.18 4.54 4.49 -4.98 -0.02 4.52 16 19 C -0.51 -13.72 8.90 -34.44 -0.31 -14.03 16 20 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 21 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 22 N -0.90 -26.19 13.29 55.43 0.74 -25.46 16 23 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 C 0.05 0.88 3.42 -65.76 -0.23 0.65 16 28 H 0.07 1.15 7.81 -51.93 -0.41 0.74 16 29 C 0.14 2.20 6.68 -3.23 -0.02 2.18 16 30 H 0.09 1.31 7.48 -51.93 -0.39 0.92 16 31 H 0.08 1.13 6.36 -51.93 -0.33 0.80 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.41 2.94 7.29 -40.82 -0.30 2.64 16 37 H 0.08 0.69 7.14 -51.93 -0.37 0.32 16 38 H 0.06 0.45 7.08 -51.93 -0.37 0.08 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.83 7.18 -51.93 -0.37 0.46 16 41 H 0.04 0.69 7.82 -51.93 -0.41 0.29 16 42 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 43 H -0.01 -0.14 7.84 -51.93 -0.41 -0.55 16 44 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 46 H 0.08 1.31 7.93 -51.93 -0.41 0.90 16 47 H 0.09 1.49 7.92 -51.93 -0.41 1.08 16 LS Contribution 375.99 15.07 5.67 5.67 Total: -1.00 -32.56 375.99 -9.39 -41.96 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -7.09 Total: -0.49 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -2.63 Total: 1.56 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.56 Total: -56.66 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.25 Total: -8.23 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.56 -9.39 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.603 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds