Wall clock time and date at job start Tue Mar 31 2020 19:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30171 * 126.80591 * 2 1 4 4 O 1.20905 * 111.73846 * 179.97438 * 3 2 1 5 5 C 1.34284 * 111.63121 * 0.02562 * 4 3 2 6 6 C 1.50696 * 126.82279 * 179.97438 * 5 4 3 7 7 C 1.35863 * 106.35832 * 359.97438 * 5 4 3 8 8 N 1.40777 * 128.05702 * 180.02562 * 7 5 4 9 9 C 1.34774 * 119.99699 * 210.49124 * 8 7 5 10 10 O 1.21604 * 120.00283 * 5.35067 * 9 8 7 11 11 N 1.34775 * 120.00123 * 185.34990 * 9 8 7 12 12 C 1.47250 * 126.69597 * 359.69206 * 11 9 8 13 13 C 1.54038 * 106.08278 * 148.28649 * 12 11 9 14 14 H 1.08997 * 112.91776 * 257.47015 * 13 12 11 15 15 C 1.54438 * 109.06100 * 132.34496 * 13 12 11 16 16 C 1.54921 * 102.96579 * 225.11377 * 15 13 12 17 17 N 1.48480 * 103.21637 * 37.73234 * 16 15 13 18 18 C 1.46903 * 110.99614 * 200.11006 * 17 16 15 19 19 C 1.50697 * 109.47215 * 287.62062 * 18 17 16 20 20 H 1.08007 * 120.00010 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99947 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00192 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00069 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47401 * 89.99683 * 23 21 19 25 25 H 1.48500 * 109.47056 * 210.00006 * 23 21 19 26 26 H 1.48504 * 109.47053 * 329.99597 * 23 21 19 27 27 C 1.47902 * 106.00095 * 320.73585 * 17 16 15 28 28 H 1.08996 * 111.57946 * 261.94685 * 27 17 16 29 29 C 1.47184 * 126.70359 * 179.97438 * 11 9 8 30 30 H 1.09001 * 109.47557 * 84.47829 * 1 2 3 31 31 H 1.09000 * 109.47223 * 204.47556 * 1 2 3 32 32 H 1.09001 * 109.47315 * 324.47787 * 1 2 3 33 33 H 1.08999 * 109.47234 * 355.03781 * 6 5 4 34 34 H 1.09004 * 109.47404 * 115.03756 * 6 5 4 35 35 H 1.09001 * 109.47217 * 235.03554 * 6 5 4 36 36 H 0.96998 * 120.00328 * 30.48239 * 8 7 5 37 37 H 1.08995 * 110.09601 * 267.56623 * 12 11 9 38 38 H 1.08996 * 110.10330 * 29.17619 * 12 11 9 39 39 H 1.09003 * 110.71481 * 106.74737 * 15 13 12 40 40 H 1.08996 * 110.87153 * 343.55702 * 15 13 12 41 41 H 1.08994 * 110.67143 * 279.29866 * 16 15 13 42 42 H 1.08998 * 110.80838 * 156.23101 * 16 15 13 43 43 H 1.08991 * 109.46988 * 47.62661 * 18 17 16 44 44 H 1.09004 * 109.46287 * 167.62181 * 18 17 16 45 45 H 0.96996 * 120.00116 * 180.02562 * 22 21 19 46 46 H 1.08998 * 110.05301 * 330.15154 * 29 11 9 47 47 H 1.08997 * 110.05437 * 91.59462 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0422 0.0000 4 8 3.4543 0.7279 0.0005 5 6 3.6078 -0.6061 0.0004 6 6 4.9095 -1.3655 0.0003 7 6 2.3565 -1.1353 0.0003 8 7 1.9889 -2.4942 0.0006 9 6 0.8422 -2.8822 -0.5918 10 8 0.1740 -2.0759 -1.2100 11 7 0.4359 -4.1639 -0.4990 12 6 1.1284 -5.2579 0.2023 13 6 0.0245 -6.2004 0.7179 14 1 -0.1717 -6.0814 1.7835 15 6 0.3954 -7.6558 0.3584 16 6 -0.9355 -8.2284 -0.1901 17 7 -1.5102 -7.0868 -0.9459 18 6 -2.9564 -7.2582 -1.1390 19 6 -3.2024 -8.3432 -2.1555 20 1 -2.3679 -8.8547 -2.6121 21 6 -4.4927 -8.6829 -2.5026 22 7 -5.5089 -8.0598 -1.9471 23 14 -4.7977 -10.0283 -3.7621 24 1 -4.9030 -11.3386 -3.0712 25 1 -6.0623 -9.7487 -4.4887 26 1 -3.6702 -10.0671 -4.7278 27 6 -1.2222 -5.8793 -0.1419 28 1 -2.0794 -5.5878 0.4649 29 6 -0.7835 -4.7447 -1.0839 30 1 -0.3634 0.0989 -1.0229 31 1 -0.3634 -0.9353 0.4258 32 1 -0.3634 0.8364 0.5971 33 1 5.7392 -0.6642 -0.0885 34 1 5.0042 -1.9244 0.9314 35 1 4.9266 -2.0572 -0.8419 36 1 2.5610 -3.1513 0.4270 37 1 1.7855 -5.7880 -0.4870 38 1 1.7037 -4.8616 1.0390 39 1 0.7139 -8.2030 1.2457 40 1 1.1707 -7.6811 -0.4073 41 1 -1.5950 -8.5196 0.6273 42 1 -0.7495 -9.0738 -0.8526 43 1 -3.4190 -7.5358 -0.1920 44 1 -3.3887 -6.3227 -1.4942 45 1 -6.4167 -8.2990 -2.1910 46 1 -1.5652 -3.9877 -1.1464 47 1 -0.5692 -5.1433 -2.0755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277940841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:27 Heat of formation + Delta-G solvation = 32.845149 kcal Electronic energy + Delta-G solvation = -29245.619701 eV Core-core repulsion = 25238.308901 eV Total energy + Delta-G solvation = -4007.310799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.00080 -41.78757 -40.31216 -37.14571 -36.62093 -35.12664 -34.83362 -33.42859 -32.97042 -30.65481 -29.66331 -29.31643 -28.39601 -27.38141 -25.36473 -24.22300 -23.48980 -21.95399 -21.88828 -20.92443 -20.63343 -19.26717 -18.72832 -18.69121 -18.41116 -17.40453 -17.00700 -16.75925 -16.40094 -16.01520 -15.72582 -15.55648 -14.97525 -14.77098 -14.48825 -14.30443 -14.19428 -14.07776 -13.92197 -13.89692 -13.66528 -13.43721 -13.26713 -13.15810 -12.83743 -12.77371 -12.49543 -12.43020 -12.29502 -12.09466 -11.83168 -11.79880 -11.70021 -11.53255 -11.30788 -11.17076 -10.69005 -10.62475 -9.88092 -9.36970 -9.18581 -8.21867 -6.32002 0.38112 0.96951 1.22610 1.40151 1.42071 1.53345 2.03792 2.19180 2.39456 2.78055 3.11340 3.24099 3.28371 3.40753 3.48558 3.58835 3.82234 3.92666 4.24547 4.26300 4.32352 4.33794 4.42620 4.52215 4.60812 4.64821 4.68599 4.69200 4.76068 4.82290 4.87422 4.89045 4.92721 4.99651 5.11041 5.14119 5.19615 5.20098 5.22713 5.27603 5.36693 5.41407 5.64817 5.85215 6.02381 6.26305 6.51364 6.77657 6.84411 7.24466 7.33375 7.38274 8.89440 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021501 B = 0.002456 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.980087 B =11395.610862 C =12133.161359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C 0.012 3.988 3 N -0.385 5.385 4 O 0.103 5.897 5 C -0.043 4.043 6 C -0.069 4.069 7 C 0.035 3.965 8 N -0.632 5.632 9 C 0.718 3.282 10 O -0.605 6.605 11 N -0.624 5.624 12 C 0.112 3.888 13 C -0.098 4.098 14 H 0.109 0.891 15 C -0.099 4.099 16 C 0.042 3.958 17 N -0.515 5.515 18 C 0.202 3.798 19 C -0.520 4.520 20 H 0.064 0.936 21 C 0.000 4.000 22 N -0.936 5.936 23 Si 0.969 3.031 24 H -0.270 1.270 25 H -0.285 1.285 26 H -0.264 1.264 27 C 0.049 3.951 28 H 0.046 0.954 29 C 0.150 3.850 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.428 0.572 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.024 0.976 42 H 0.071 0.929 43 H -0.034 1.034 44 H -0.004 1.004 45 H 0.264 0.736 46 H 0.050 0.950 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.716 7.531 9.946 27.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.148 4.148 3 N -0.092 5.092 4 O 0.040 5.960 5 C -0.110 4.110 6 C -0.126 4.126 7 C -0.064 4.064 8 N -0.285 5.285 9 C 0.421 3.579 10 O -0.484 6.484 11 N -0.360 5.360 12 C -0.010 4.010 13 C -0.117 4.117 14 H 0.128 0.872 15 C -0.137 4.137 16 C -0.086 4.086 17 N -0.239 5.239 18 C 0.075 3.925 19 C -0.558 4.558 20 H 0.082 0.918 21 C -0.198 4.198 22 N -0.577 5.577 23 Si 0.793 3.207 24 H -0.196 1.196 25 H -0.211 1.211 26 H -0.188 1.188 27 C -0.061 4.061 28 H 0.064 0.936 29 C 0.025 3.975 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.133 0.867 35 H 0.118 0.882 36 H 0.269 0.731 37 H 0.111 0.889 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.043 0.957 42 H 0.089 0.911 43 H -0.017 1.017 44 H 0.014 0.986 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 24.053 9.522 8.970 27.380 hybrid contribution -1.832 -1.570 0.081 2.414 sum 22.221 7.952 9.052 25.277 Atomic orbital electron populations 1.20016 0.85654 1.02091 1.02601 1.23612 0.99530 0.88394 1.03254 1.73797 0.89889 1.23942 1.21616 1.84823 1.20539 1.22524 1.68106 1.24611 0.97960 0.83350 1.05092 1.20601 0.87620 0.98806 1.05606 1.17905 0.92137 0.85360 1.11044 1.41328 1.23185 1.04636 1.59385 1.15387 0.81306 0.81184 0.80058 1.90997 1.57634 1.51876 1.47892 1.47530 1.25512 1.06629 1.56341 1.22531 0.94475 0.86734 0.97240 1.22837 0.92753 0.96240 0.99916 0.87247 1.22620 0.95908 0.93207 1.02007 1.23150 0.95640 0.94393 0.95427 1.64714 1.14547 1.01854 1.42774 1.19498 0.83667 0.95320 0.93970 1.21432 0.92170 1.18942 1.23270 0.91782 1.25931 0.95876 0.99287 0.98729 1.70087 0.99150 1.43479 1.44984 0.85388 0.77609 0.78869 0.78799 1.19564 1.21089 1.18845 1.23084 0.97616 0.92029 0.93375 0.93592 1.21618 0.85505 0.93603 0.96755 0.91302 0.91263 0.91107 0.87891 0.86686 0.88192 0.73111 0.88892 0.87275 0.88036 0.89156 0.95729 0.91101 1.01659 0.98624 0.92751 0.93166 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.32 8.43 71.23 0.60 -0.72 16 2 C 0.01 0.33 7.02 43.68 0.31 0.63 16 3 N -0.39 -10.54 12.06 -48.97 -0.59 -11.13 16 4 O 0.10 2.26 11.20 69.33 0.78 3.03 16 5 C -0.04 -0.69 7.51 25.13 0.19 -0.50 16 6 C -0.07 -0.33 10.45 71.23 0.74 0.42 16 7 C 0.04 0.77 6.79 38.03 0.26 1.03 16 8 N -0.63 -11.74 5.42 -316.42 -1.72 -13.46 16 9 C 0.72 19.32 7.83 179.06 1.40 20.72 16 10 O -0.61 -21.59 12.12 -4.04 -0.05 -21.64 16 11 N -0.62 -15.45 3.32 -832.47 -2.76 -18.21 16 12 C 0.11 1.73 6.31 86.59 0.55 2.28 16 13 C -0.10 -2.01 4.01 -9.33 -0.04 -2.05 16 14 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 15 C -0.10 -1.99 6.59 31.74 0.21 -1.78 16 16 C 0.04 1.38 6.11 86.65 0.53 1.91 16 17 N -0.51 -20.70 4.67 -859.52 -4.02 -24.72 16 18 C 0.20 10.62 4.49 85.56 0.38 11.00 16 19 C -0.52 -29.14 8.90 25.60 0.23 -28.91 16 20 H 0.06 3.50 7.81 -2.91 -0.02 3.47 16 21 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 22 N -0.94 -56.71 13.29 21.45 0.28 -56.43 16 23 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 27 C 0.05 1.61 3.42 45.63 0.16 1.77 16 28 H 0.05 1.69 7.81 -2.39 -0.02 1.67 16 29 C 0.15 4.93 6.68 86.53 0.58 5.51 16 30 H 0.07 2.20 7.48 -2.39 -0.02 2.18 16 31 H 0.07 2.07 6.36 -2.39 -0.02 2.06 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.11 -0.02 8.14 -2.38 -0.02 -0.04 16 35 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.43 4.19 7.29 -92.71 -0.68 3.51 16 37 H 0.09 1.21 7.14 -2.39 -0.02 1.19 16 38 H 0.11 0.82 7.08 -2.39 -0.02 0.80 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.09 1.59 7.18 -2.39 -0.02 1.57 16 41 H 0.02 0.87 7.82 -2.39 -0.02 0.86 16 42 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 43 H -0.03 -1.95 7.84 -2.39 -0.02 -1.97 16 44 H 0.00 -0.25 8.08 -2.39 -0.02 -0.27 16 45 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 46 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 47 H 0.07 2.43 7.92 -2.39 -0.02 2.41 16 Total: -1.00 -77.97 375.99 0.83 -77.14 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.32 Total: 7.50 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 6.56 Total: 11.74 kcal Atomic # 7 Polarization: -115.14 SS G_CDS: -8.80 Total: -123.94 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.73 Total: -18.60 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -77.97 0.83 -77.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.984 kcal (2) G-P(sol) polarization free energy of solvation -77.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds