Wall clock time and date at job start Tue Mar 31 2020 19:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30181 * 126.80685 * 2 1 4 4 O 1.20894 * 111.74118 * 180.26603 * 3 2 1 5 5 C 1.34288 * 111.63007 * 359.72684 * 4 3 2 6 6 C 1.50697 * 126.82313 * 180.02562 * 5 4 3 7 7 C 1.35857 * 106.35762 * 0.02562 * 5 4 3 8 8 N 1.40783 * 128.05704 * 179.97438 * 7 5 4 9 9 C 1.34780 * 119.99750 * 149.30272 * 8 7 5 10 10 O 1.21597 * 120.00168 * 5.94039 * 9 8 7 11 11 N 1.34777 * 119.99687 * 185.93753 * 9 8 7 12 12 C 1.47040 * 120.29635 * 4.66500 * 11 9 8 13 13 C 1.54146 * 108.06514 * 228.74058 * 12 11 9 14 14 H 1.09001 * 113.61988 * 174.46821 * 13 12 11 15 15 C 1.55422 * 106.37811 * 299.61597 * 13 12 11 16 16 C 1.55177 * 100.67548 * 73.99843 * 15 13 12 17 17 H 1.09002 * 113.05755 * 162.39420 * 16 15 13 18 18 C 1.46984 * 120.28586 * 184.72772 * 11 9 8 19 19 N 1.48143 * 104.31237 * 39.90937 * 16 15 13 20 20 C 1.46904 * 111.00266 * 211.96001 * 19 16 15 21 21 C 1.50692 * 109.47261 * 177.30066 * 20 19 16 22 22 H 1.08004 * 120.00120 * 0.02562 * 21 20 19 23 23 C 1.37874 * 120.00362 * 179.97438 * 21 20 19 24 24 N 1.31522 * 119.99737 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00393 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47199 * 60.00554 * 25 23 21 27 27 H 1.48508 * 109.47122 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47284 * 300.00514 * 25 23 21 29 29 C 1.47466 * 108.26124 * 334.02502 * 19 16 15 30 30 H 1.09004 * 109.47641 * 276.30546 * 1 2 3 31 31 H 1.09004 * 109.47342 * 36.30476 * 1 2 3 32 32 H 1.09000 * 109.46893 * 156.30436 * 1 2 3 33 33 H 1.08997 * 109.47168 * 269.96055 * 6 5 4 34 34 H 1.08999 * 109.47143 * 29.96161 * 6 5 4 35 35 H 1.08998 * 109.47385 * 149.95732 * 6 5 4 36 36 H 0.96995 * 119.99744 * 329.30986 * 8 7 5 37 37 H 1.09002 * 109.71426 * 109.11303 * 12 11 9 38 38 H 1.08994 * 109.79805 * 348.41822 * 12 11 9 39 39 H 1.08999 * 111.17709 * 316.14185 * 15 13 12 40 40 H 1.09001 * 111.17237 * 191.85471 * 15 13 12 41 41 H 1.09001 * 109.70354 * 11.86100 * 18 11 9 42 42 H 1.08999 * 109.70668 * 251.29573 * 18 11 9 43 43 H 1.09001 * 109.47072 * 297.30816 * 20 19 16 44 44 H 1.09004 * 109.46852 * 57.30312 * 20 19 16 45 45 H 0.96997 * 120.00276 * 179.97438 * 24 23 21 46 46 H 1.09007 * 109.96529 * 120.40650 * 29 19 16 47 47 H 1.09002 * 109.96510 * 241.65570 * 29 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4543 0.7281 -0.0052 5 6 3.6078 -0.6060 -0.0035 6 6 4.9095 -1.3654 -0.0081 7 6 2.3565 -1.1351 0.0030 8 7 1.9890 -2.4941 0.0066 9 6 0.8470 -2.8817 0.6084 10 8 0.0811 -2.0486 1.0533 11 7 0.5539 -4.1928 0.7170 12 6 1.5208 -5.2082 0.2740 13 6 0.7756 -6.2211 -0.6174 14 1 1.4292 -6.9638 -1.0750 15 6 -0.3367 -6.8489 0.2681 16 6 -1.3480 -5.6739 0.3354 17 1 -2.3436 -5.9850 0.6518 18 6 -0.7357 -4.6201 1.2780 19 7 -1.3408 -5.1056 -1.0327 20 6 -1.5858 -3.6575 -1.0026 21 6 -1.5055 -3.1052 -2.4024 22 1 -1.2940 -3.7642 -3.2316 23 6 -1.7030 -1.7590 -2.6249 24 7 -1.9610 -0.9566 -1.6152 25 14 -1.6041 -1.0745 -4.3601 26 1 -2.6280 -1.7326 -5.2109 27 1 -1.8517 0.3894 -4.3296 28 1 -0.2535 -1.3362 -4.9192 29 6 -0.0370 -5.4082 -1.6518 30 1 -0.3634 0.1129 1.0214 31 1 -0.3634 0.8282 -0.6085 32 1 -0.3633 -0.9410 -0.4130 33 1 5.2183 -1.5509 -1.0368 34 1 5.6742 -0.7785 0.5007 35 1 4.7774 -2.3159 0.5087 36 1 2.5577 -3.1514 -0.4239 37 1 1.9404 -5.7191 1.1406 38 1 2.3194 -4.7336 -0.2961 39 1 0.0428 -7.0990 1.2587 40 1 -0.7782 -7.7213 -0.2139 41 1 -1.4048 -3.7631 1.3554 42 1 -0.5809 -5.0556 2.2651 43 1 -2.5772 -3.4652 -0.5924 44 1 -0.8342 -3.1747 -0.3779 45 1 -2.0996 -0.0094 -1.7715 46 1 -0.1827 -5.9978 -2.5570 47 1 0.4855 -4.4819 -1.8908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277941785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:25 Heat of formation + Delta-G solvation = 98.389464 kcal Electronic energy + Delta-G solvation = -32293.548833 eV Core-core repulsion = 28289.080248 eV Total energy + Delta-G solvation = -4004.468585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.42237 -41.18181 -38.69629 -35.33788 -34.54771 -33.26623 -32.95893 -32.05363 -31.68371 -30.15334 -27.64846 -27.28352 -26.36086 -25.22725 -24.85114 -22.55167 -22.36496 -20.60165 -20.10149 -19.62228 -18.76302 -17.91340 -17.26808 -17.18984 -16.31465 -15.90373 -15.45212 -15.00978 -14.76278 -14.39399 -14.10588 -13.75553 -13.61780 -13.55299 -13.24841 -13.08927 -12.65999 -12.56744 -12.27204 -12.22178 -12.00381 -11.87917 -11.78917 -11.57129 -11.34757 -11.02146 -10.85355 -10.68776 -10.57844 -10.46649 -10.35737 -10.26008 -10.06956 -9.75077 -9.24331 -9.05172 -8.99277 -8.42152 -8.17894 -7.96401 -7.08834 -5.94741 -3.95079 1.77077 2.62929 2.77867 3.32951 3.40038 3.40403 3.49616 3.68401 4.00409 4.44502 4.64641 4.77241 4.80124 4.90714 4.97963 5.07208 5.24875 5.34141 5.36859 5.37608 5.43770 5.45261 5.48538 5.61122 5.61684 5.83373 5.89977 5.97367 6.03678 6.08372 6.25906 6.30186 6.42261 6.53348 6.61160 6.71970 6.87862 6.95014 7.02832 7.09286 7.25752 7.53875 7.77578 8.00769 8.09734 8.15370 8.29462 8.57438 8.79725 8.95452 9.07822 9.64471 11.09655 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009632 B = 0.007011 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.199505 B = 3992.759829 C = 5747.101583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.054 3.946 3 N -0.375 5.375 4 O 0.091 5.909 5 C -0.093 4.093 6 C -0.061 4.061 7 C 0.068 3.932 8 N -0.653 5.653 9 C 0.712 3.288 10 O -0.534 6.534 11 N -0.619 5.619 12 C 0.117 3.883 13 C -0.134 4.134 14 H 0.095 0.905 15 C -0.119 4.119 16 C 0.053 3.947 17 H 0.100 0.900 18 C 0.105 3.895 19 N -0.520 5.520 20 C 0.161 3.839 21 C -0.511 4.511 22 H 0.054 0.946 23 C 0.060 3.940 24 N -0.873 5.873 25 Si 0.886 3.114 26 H -0.278 1.278 27 H -0.287 1.287 28 H -0.281 1.281 29 C 0.064 3.936 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.163 0.837 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.403 0.597 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.056 0.944 43 H 0.022 0.978 44 H 0.041 0.959 45 H 0.262 0.738 46 H 0.058 0.942 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.271 -9.595 5.705 16.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.107 4.107 3 N -0.085 5.085 4 O 0.031 5.969 5 C -0.160 4.160 6 C -0.119 4.119 7 C -0.032 4.032 8 N -0.307 5.307 9 C 0.416 3.584 10 O -0.407 6.407 11 N -0.357 5.357 12 C -0.006 4.006 13 C -0.154 4.154 14 H 0.113 0.887 15 C -0.157 4.157 16 C -0.057 4.057 17 H 0.118 0.882 18 C -0.019 4.019 19 N -0.244 5.244 20 C 0.036 3.964 21 C -0.550 4.550 22 H 0.072 0.928 23 C -0.142 4.142 24 N -0.512 5.512 25 Si 0.714 3.286 26 H -0.204 1.204 27 H -0.213 1.213 28 H -0.207 1.207 29 C -0.064 4.064 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.180 0.820 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.241 0.759 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.074 0.926 43 H 0.041 0.959 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.010 -7.682 5.818 14.632 hybrid contribution 0.878 -0.297 -0.900 1.292 sum 11.888 -7.979 4.917 15.138 Atomic orbital electron populations 1.21227 0.81883 1.08097 1.01808 1.24183 1.00775 0.86311 0.99404 1.73803 0.89039 1.23916 1.21734 1.84802 1.21918 1.20804 1.69423 1.23610 0.96590 0.84932 1.10847 1.20132 0.90254 0.98124 1.03352 1.17921 0.91559 0.85650 1.08078 1.41817 1.25280 1.04499 1.59068 1.15503 0.80733 0.82731 0.79474 1.91116 1.48241 1.49136 1.52217 1.47225 1.18597 1.03200 1.66689 1.21851 0.90979 0.90241 0.97579 1.23295 0.97740 0.97322 0.97091 0.88654 1.22864 0.95871 0.97966 0.98995 1.23418 0.98002 0.93279 0.90968 0.88181 1.22312 0.84001 1.00327 0.95252 1.63823 1.28604 1.18306 1.13700 1.20440 0.97545 0.80502 0.97941 1.21070 1.48332 0.92525 0.93033 0.92765 1.24866 0.95875 0.97015 0.96445 1.69846 1.47560 1.04497 1.29313 0.86760 0.78290 0.77981 0.85556 1.20402 1.21300 1.20723 1.22666 0.89686 0.98323 0.95740 0.91780 0.93834 0.82012 0.90097 0.90024 0.90093 0.75886 0.91627 0.91283 0.91428 0.90950 0.87872 0.92578 0.95946 0.94216 0.92755 0.92342 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.77 7.18 36.00 0.26 -1.51 16 2 C 0.05 1.18 7.06 -81.94 -0.58 0.60 16 3 N -0.38 -7.82 12.06 33.56 0.40 -7.41 16 4 O 0.09 1.62 11.20 16.52 0.19 1.80 16 5 C -0.09 -1.42 7.51 -35.16 -0.26 -1.68 16 6 C -0.06 -0.57 10.45 36.00 0.38 -0.19 16 7 C 0.07 1.25 6.85 -83.24 -0.57 0.68 16 8 N -0.65 -10.98 5.36 -13.99 -0.08 -11.06 16 9 C 0.71 13.60 6.14 -86.91 -0.53 13.06 16 10 O -0.53 -12.23 9.61 5.28 0.05 -12.17 16 11 N -0.62 -9.91 1.82 -177.22 -0.32 -10.24 16 12 C 0.12 1.40 5.70 -3.15 -0.02 1.38 16 13 C -0.13 -1.65 4.32 -87.87 -0.38 -2.03 16 14 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 15 C -0.12 -1.44 6.16 -24.29 -0.15 -1.59 16 16 C 0.05 0.84 4.38 -65.31 -0.29 0.55 16 17 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 18 C 0.11 1.71 5.15 -3.22 -0.02 1.69 16 19 N -0.52 -10.33 5.24 -223.51 -1.17 -11.50 16 20 C 0.16 3.90 3.47 -4.98 -0.02 3.89 16 21 C -0.51 -13.74 8.12 -34.45 -0.28 -14.02 16 22 H 0.05 1.48 7.30 -52.48 -0.38 1.10 16 23 C 0.06 1.64 5.45 -17.82 -0.10 1.54 16 24 N -0.87 -24.38 9.47 55.43 0.52 -23.85 16 25 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 29 C 0.06 1.12 5.01 -2.65 -0.01 1.11 16 30 H 0.06 1.57 7.53 -51.93 -0.39 1.17 16 31 H 0.04 1.06 7.70 -51.93 -0.40 0.66 16 32 H 0.16 4.24 3.19 -51.93 -0.17 4.08 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.40 5.35 6.31 -40.82 -0.26 5.10 16 37 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 38 H 0.07 0.72 5.60 -51.93 -0.29 0.43 16 39 H 0.07 0.69 7.90 -51.93 -0.41 0.28 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.10 2.06 5.96 -51.93 -0.31 1.75 16 42 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 43 H 0.02 0.62 8.13 -51.93 -0.42 0.20 16 44 H 0.04 0.95 1.73 -51.93 -0.09 0.86 16 45 H 0.26 7.21 7.87 -40.82 -0.32 6.89 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.06 1.24 6.55 -51.93 -0.34 0.90 16 LS Contribution 347.54 15.07 5.24 5.24 Total: -1.00 -32.23 347.54 -9.13 -41.37 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.38 Total: 7.60 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -2.57 Total: 3.47 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: -0.64 Total: -64.06 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.24 Total: -10.37 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.23 -9.13 -41.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277941785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.755 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds