Wall clock time and date at job start Tue Mar 31 2020 19:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30172 * 126.80983 * 2 1 4 4 O 1.20897 * 111.74122 * 179.73664 * 3 2 1 5 5 C 1.34286 * 111.63433 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.82536 * 179.97438 * 5 4 3 7 7 C 1.35860 * 106.35359 * 359.97438 * 5 4 3 8 8 N 1.40783 * 128.05389 * 179.97438 * 7 5 4 9 9 C 1.34768 * 119.99872 * 215.46139 * 8 7 5 10 10 O 1.21600 * 120.00259 * 353.95727 * 9 8 7 11 11 N 1.34778 * 120.00002 * 173.96629 * 9 8 7 12 12 C 1.47682 * 121.55302 * 359.71385 * 11 9 8 13 13 C 1.53846 * 107.16787 * 219.28345 * 12 11 9 14 14 H 1.09001 * 114.64974 * 159.70284 * 13 12 11 15 15 C 1.54224 * 111.01591 * 293.50051 * 13 12 11 16 16 C 1.54232 * 85.37548 * 81.21436 * 15 13 12 17 17 H 1.09002 * 115.95080 * 145.64652 * 16 15 13 18 18 C 1.47686 * 121.55238 * 179.97438 * 11 9 8 19 19 N 1.48490 * 84.84608 * 28.51988 * 16 15 13 20 20 C 1.46902 * 111.00345 * 217.99959 * 19 16 15 21 21 C 1.52999 * 109.46853 * 310.28879 * 20 19 16 22 22 C 1.50702 * 109.46764 * 179.97438 * 21 20 19 23 23 H 1.07997 * 120.00443 * 0.02562 * 22 21 20 24 24 C 1.37874 * 119.99698 * 180.02562 * 22 21 20 25 25 N 1.31516 * 120.00060 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00384 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.46764 * 89.99721 * 26 24 22 28 28 H 1.48497 * 109.47578 * 210.00120 * 26 24 22 29 29 H 1.48503 * 109.47029 * 330.00456 * 26 24 22 30 30 H 1.08999 * 109.47395 * 87.73203 * 1 2 3 31 31 H 1.09010 * 109.47068 * 207.73123 * 1 2 3 32 32 H 1.08999 * 109.46904 * 327.73007 * 1 2 3 33 33 H 1.09008 * 109.46471 * 5.01541 * 6 5 4 34 34 H 1.09000 * 109.47357 * 125.00704 * 6 5 4 35 35 H 1.08992 * 109.47456 * 245.01502 * 6 5 4 36 36 H 0.96998 * 120.00067 * 35.45789 * 8 7 5 37 37 H 1.09003 * 109.94975 * 338.73721 * 12 11 9 38 38 H 1.08999 * 109.95565 * 100.00029 * 12 11 9 39 39 H 1.09001 * 113.88461 * 327.10331 * 15 13 12 40 40 H 1.08996 * 113.89006 * 195.32237 * 15 13 12 41 41 H 1.08999 * 109.94948 * 259.99571 * 18 11 9 42 42 H 1.08996 * 109.95439 * 21.17254 * 18 11 9 43 43 H 1.09003 * 109.46981 * 70.28848 * 20 19 16 44 44 H 1.08999 * 109.46998 * 190.28779 * 20 19 16 45 45 H 1.08998 * 109.46970 * 299.99463 * 21 20 19 46 46 H 1.09000 * 109.47040 * 59.99743 * 21 20 19 47 47 H 0.96998 * 120.00558 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4543 0.7279 0.0052 5 6 3.6078 -0.6061 0.0088 6 6 4.9095 -1.3655 0.0150 7 6 2.3565 -1.1352 0.0059 8 7 1.9889 -2.4942 0.0074 9 6 0.8975 -2.8978 -0.6724 10 8 0.1688 -2.0767 -1.1953 11 7 0.6135 -4.2115 -0.7726 12 6 1.4779 -5.2382 -0.1562 13 6 1.5541 -6.4181 -1.1405 14 1 2.4067 -7.0805 -0.9909 15 6 0.1818 -7.1066 -1.2860 16 6 -0.1474 -5.9643 -2.2685 17 1 -0.7890 -6.2284 -3.1092 18 6 -0.5734 -4.6917 -1.5086 19 7 1.3145 -5.9463 -2.5281 20 6 1.8004 -4.5716 -2.7080 21 6 0.9127 -3.8455 -3.7208 22 6 1.4108 -2.4352 -3.9050 23 1 2.2743 -2.0913 -3.3550 24 6 0.7641 -1.5839 -4.7756 25 7 1.1990 -0.3532 -4.9367 26 14 -0.7291 -2.1788 -5.7274 27 1 -1.9585 -1.9069 -4.9401 28 1 -0.8050 -1.4639 -7.0268 29 1 -0.6107 -3.6388 -5.9719 30 1 -0.3634 0.0407 -1.0268 31 1 -0.3634 -0.9097 0.4782 32 1 -0.3633 0.8689 0.5487 33 1 5.7389 -0.6640 0.1060 34 1 4.9234 -2.0559 0.8584 35 1 5.0077 -1.9257 -0.9147 36 1 2.5213 -3.1401 0.4977 37 1 2.4747 -4.8315 0.0143 38 1 1.0449 -5.5717 0.7868 39 1 -0.4177 -7.0925 -0.3758 40 1 0.2288 -8.0905 -1.7528 41 1 -1.3750 -4.9271 -0.8085 42 1 -0.9072 -3.9303 -2.2134 43 1 1.7670 -4.0466 -1.7534 44 1 2.8266 -4.5941 -3.0746 45 1 0.9462 -4.3706 -4.6754 46 1 -0.1135 -3.8232 -3.3542 47 1 0.7443 0.2456 -5.5495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277944897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:21 Heat of formation + Delta-G solvation = 177.170656 kcal Electronic energy + Delta-G solvation = -32149.345579 eV Core-core repulsion = 28148.293203 eV Total energy + Delta-G solvation = -4001.052376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.45791 -42.43424 -39.18309 -35.40949 -34.39630 -33.43112 -33.33031 -31.98150 -31.32431 -30.24851 -28.07363 -27.73288 -27.30228 -25.65055 -23.41647 -22.93854 -22.30558 -20.61329 -20.40931 -19.90748 -18.40063 -18.17137 -17.31396 -17.20016 -16.62979 -16.13929 -15.86135 -15.39222 -14.90101 -14.51221 -14.28072 -14.02871 -13.89387 -13.41965 -13.25747 -13.15790 -12.73342 -12.61852 -12.46613 -12.39084 -12.21226 -12.07964 -12.01128 -11.92157 -11.52215 -11.18665 -11.06023 -10.91919 -10.56222 -10.36249 -10.33687 -9.83079 -9.76994 -9.59387 -9.52085 -9.20322 -9.12601 -8.94376 -8.31753 -8.10209 -7.25273 -5.84378 -3.78116 1.78880 2.43339 2.69895 3.40260 3.41160 3.46710 3.49249 3.58286 3.88296 4.16733 4.39809 4.59296 4.60496 4.76593 4.78643 4.89096 5.11886 5.20076 5.22221 5.23864 5.43792 5.45385 5.50354 5.56847 5.61109 5.67887 5.75314 5.79503 5.98187 5.99488 6.01041 6.04786 6.11549 6.17230 6.31326 6.38960 6.41586 6.73272 6.83210 6.88858 6.92990 7.03194 7.19293 7.47843 7.63436 7.96371 7.98644 8.70209 8.72495 8.85528 9.17888 9.79152 11.29779 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009664 B = 0.006856 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.737593 B = 4082.784713 C = 5761.151246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.049 3.951 3 N -0.363 5.363 4 O 0.100 5.900 5 C -0.069 4.069 6 C -0.065 4.065 7 C 0.069 3.931 8 N -0.658 5.658 9 C 0.715 3.285 10 O -0.511 6.511 11 N -0.624 5.624 12 C 0.096 3.904 13 C 0.005 3.995 14 H 0.113 0.887 15 C -0.132 4.132 16 C 0.016 3.984 17 H 0.112 0.888 18 C 0.114 3.886 19 N -0.459 5.459 20 C -0.034 4.034 21 C -0.014 4.014 22 C -0.488 4.488 23 H 0.061 0.939 24 C 0.073 3.927 25 N -0.903 5.903 26 Si 0.871 3.129 27 H -0.278 1.278 28 H -0.292 1.292 29 H -0.268 1.268 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.401 0.599 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.120 0.880 43 H 0.107 0.893 44 H 0.049 0.951 45 H 0.008 0.992 46 H 0.024 0.976 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 -11.427 15.615 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.111 4.111 3 N -0.070 5.070 4 O 0.038 5.962 5 C -0.136 4.136 6 C -0.122 4.122 7 C -0.030 4.030 8 N -0.311 5.311 9 C 0.418 3.582 10 O -0.380 6.380 11 N -0.365 5.365 12 C -0.029 4.029 13 C -0.105 4.105 14 H 0.130 0.870 15 C -0.170 4.170 16 C -0.094 4.094 17 H 0.130 0.870 18 C -0.009 4.009 19 N -0.181 5.181 20 C -0.162 4.162 21 C -0.051 4.051 22 C -0.526 4.526 23 H 0.079 0.921 24 C -0.127 4.127 25 N -0.542 5.542 26 Si 0.699 3.301 27 H -0.204 1.204 28 H -0.218 1.218 29 H -0.193 1.193 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.238 0.762 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.138 0.862 43 H 0.124 0.876 44 H 0.068 0.932 45 H 0.026 0.974 46 H 0.042 0.958 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.452 -9.641 14.505 17.477 hybrid contribution -0.680 -0.932 -0.029 1.154 sum 0.773 -10.573 14.476 17.943 Atomic orbital electron populations 1.20138 0.85411 1.00865 1.04425 1.23327 0.99173 0.87188 1.01451 1.73741 0.89132 1.23476 1.20666 1.84817 1.21524 1.21076 1.68766 1.23682 0.96861 0.84553 1.08509 1.20198 0.90197 0.98382 1.03470 1.17639 0.91424 0.85096 1.08858 1.41737 1.29997 1.05098 1.54282 1.15194 0.81468 0.81959 0.79599 1.91119 1.49256 1.49794 1.47844 1.47741 1.27877 1.03687 1.57228 1.22141 0.94602 0.89694 0.96416 1.23998 0.99292 0.95965 0.91274 0.86962 1.23621 0.95637 0.98660 0.99045 1.24034 0.93740 0.93814 0.97782 0.86985 1.22486 0.85771 0.97210 0.95461 1.69395 1.04928 1.23906 1.19874 1.24031 0.99355 0.88212 1.04636 1.19875 0.95288 0.96104 0.93851 1.20711 1.14054 0.93912 1.23957 0.92063 1.24856 0.96662 0.94634 0.96568 1.69910 1.41025 1.05794 1.37512 0.86930 0.84471 0.79138 0.79574 1.20448 1.21807 1.19335 0.88521 0.90919 0.92878 0.89911 0.90158 0.89378 0.76200 0.90310 0.90719 0.91356 0.88987 0.91773 0.86241 0.87618 0.93244 0.97379 0.95849 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.96 8.41 36.00 0.30 -0.66 16 2 C 0.05 0.99 7.02 -81.94 -0.58 0.41 16 3 N -0.36 -7.37 12.06 33.56 0.40 -6.96 16 4 O 0.10 1.84 11.20 16.53 0.19 2.02 16 5 C -0.07 -1.11 7.51 -35.16 -0.26 -1.37 16 6 C -0.06 -0.70 10.45 36.00 0.38 -0.32 16 7 C 0.07 1.22 6.78 -83.24 -0.56 0.66 16 8 N -0.66 -10.09 5.26 -14.14 -0.07 -10.16 16 9 C 0.71 12.78 5.26 -86.92 -0.46 12.32 16 10 O -0.51 -11.37 10.11 5.28 0.05 -11.32 16 11 N -0.62 -9.28 1.68 -176.42 -0.30 -9.58 16 12 C 0.10 1.02 5.31 -2.95 -0.02 1.00 16 13 C 0.01 0.06 5.41 -65.97 -0.36 -0.30 16 14 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 15 C -0.13 -1.37 7.49 -25.66 -0.19 -1.56 16 16 C 0.02 0.24 4.48 -65.77 -0.29 -0.06 16 17 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 18 C 0.11 1.73 5.29 -2.75 -0.01 1.72 16 19 N -0.46 -7.45 6.44 -229.40 -1.48 -8.92 16 20 C -0.03 -0.69 4.66 -3.82 -0.02 -0.70 16 21 C -0.01 -0.34 2.99 -27.88 -0.08 -0.43 16 22 C -0.49 -14.17 8.32 -34.44 -0.29 -14.46 16 23 H 0.06 1.97 7.99 -52.49 -0.42 1.55 16 24 C 0.07 2.23 5.47 -17.82 -0.10 2.13 16 25 N -0.90 -29.26 13.96 55.43 0.77 -28.48 16 26 Si 0.87 23.00 27.47 -169.99 -4.67 18.33 16 27 H -0.28 -7.27 7.11 56.52 0.40 -6.86 16 28 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 29 H -0.27 -6.83 6.54 56.52 0.37 -6.46 16 30 H 0.10 2.15 7.29 -51.93 -0.38 1.77 16 31 H 0.07 1.28 6.75 -51.92 -0.35 0.93 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.75 8.14 -51.92 -0.42 0.32 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.40 4.51 6.64 -40.82 -0.27 4.24 16 37 H 0.08 0.74 6.17 -51.93 -0.32 0.42 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.12 2.31 4.76 -51.93 -0.25 2.06 16 43 H 0.11 1.96 1.58 -106.96 -0.17 1.79 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.01 0.21 7.20 -51.93 -0.37 -0.16 16 46 H 0.02 0.57 3.38 -51.93 -0.18 0.39 16 47 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -37.28 353.34 -8.83 -46.11 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.52 Total: 5.25 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -2.54 Total: -1.62 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: -0.67 Total: -64.11 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.24 Total: -9.29 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.67 Total: 18.33 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.28 -8.83 -46.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277944897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.281 kcal (2) G-P(sol) polarization free energy of solvation -37.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds