Wall clock time and date at job start Tue Mar 31 2020 19:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 110.38514 * 2 1 4 4 C 1.54394 * 110.34198 * 237.77131 * 2 1 3 5 5 N 1.48144 * 104.61599 * 217.25895 * 4 2 1 6 6 C 1.34774 * 127.84076 * 219.56215 * 5 4 2 7 7 O 1.21631 * 119.99649 * 358.02382 * 6 5 4 8 8 C 1.47266 * 120.00223 * 178.01926 * 6 5 4 9 9 C 1.46688 * 126.93800 * 16.21682 * 8 6 5 10 10 C 1.34489 * 106.32740 * 179.97438 * 9 8 6 11 11 N 1.36441 * 108.85827 * 0.02562 * 10 9 8 12 12 H 0.96999 * 124.84819 * 180.02562 * 11 10 9 13 13 C 1.34662 * 110.29841 * 359.74804 * 11 10 9 14 14 C 1.48151 * 104.32061 * 39.58903 * 5 4 2 15 15 C 1.54279 * 110.34274 * 122.23228 * 2 1 3 16 16 H 1.09003 * 110.43045 * 359.96065 * 15 2 1 17 17 N 1.46901 * 110.34409 * 237.74404 * 15 2 1 18 18 C 1.46898 * 110.99872 * 158.01126 * 17 15 2 19 19 C 1.50708 * 109.46824 * 179.97438 * 18 17 15 20 20 O 1.21290 * 119.99982 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99620 * 180.02562 * 19 18 17 22 22 C 1.37104 * 119.99786 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99824 * 359.97438 * 22 21 19 24 24 C 1.38950 * 119.99891 * 179.97438 * 22 21 19 25 25 N 1.31408 * 119.99997 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99534 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47341 * 60.00519 * 26 24 22 28 28 H 1.48501 * 109.46740 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47274 * 300.00036 * 26 24 22 30 30 H 1.09004 * 109.47328 * 297.76710 * 1 2 3 31 31 H 1.09007 * 109.47347 * 57.76761 * 1 2 3 32 32 H 1.09005 * 109.47161 * 177.76442 * 1 2 3 33 33 H 1.09007 * 109.46648 * 182.22781 * 3 2 1 34 34 H 1.08992 * 109.47420 * 302.23323 * 3 2 1 35 35 H 1.09002 * 109.47035 * 62.23954 * 3 2 1 36 36 H 1.09001 * 110.40626 * 98.47967 * 4 2 1 37 37 H 1.08997 * 110.50625 * 336.09541 * 4 2 1 38 38 H 1.07999 * 126.83581 * 359.95425 * 9 8 6 39 39 H 1.08001 * 125.56892 * 179.97438 * 10 9 8 40 40 H 1.08003 * 125.79991 * 180.30038 * 13 11 10 41 41 H 1.09003 * 110.40544 * 201.62930 * 14 5 4 42 42 H 1.08995 * 110.41076 * 79.19904 * 14 5 4 43 43 H 1.00902 * 110.99594 * 281.95896 * 17 15 2 44 44 H 1.08996 * 109.47337 * 299.99687 * 18 17 15 45 45 H 1.08998 * 109.47493 * 60.00142 * 18 17 15 46 46 H 0.96995 * 120.00378 * 359.97438 * 21 19 18 47 47 H 0.96998 * 119.99446 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0629 1.4342 0.0000 4 6 2.0667 -0.7720 -1.2246 5 7 3.2664 -1.4816 -0.7228 6 6 4.4423 -1.6666 -1.3548 7 8 4.5943 -1.2550 -2.4892 8 6 5.5431 -2.3671 -0.6720 9 6 5.4453 -3.2027 0.5297 10 6 6.6917 -3.6339 0.7929 11 7 7.5408 -3.1297 -0.1487 12 1 8.4960 -3.2954 -0.1791 13 6 6.8622 -2.3743 -1.0331 14 6 2.8801 -1.9422 0.6313 15 6 2.0663 -0.7715 1.2236 16 1 1.2408 -1.1506 1.8262 17 7 2.9331 0.0947 2.0338 18 6 3.0298 -0.3999 3.4136 19 6 3.9256 0.5117 4.2123 20 8 4.4337 1.4780 3.6839 21 7 4.1627 0.2526 5.5135 22 6 4.9772 1.0822 6.2403 23 1 5.4290 1.9430 5.7700 24 6 5.2213 0.8153 7.5819 25 7 4.6719 -0.2324 8.1540 26 14 6.3315 1.9453 8.5718 27 1 5.7637 3.3175 8.5766 28 1 6.4298 1.4450 9.9666 29 1 7.6840 1.9713 7.9594 30 1 -0.3634 0.4788 0.9093 31 1 -0.3634 0.5481 -0.8693 32 1 -0.3634 -1.0269 -0.0401 33 1 3.1522 1.4170 -0.0400 34 1 1.6758 1.9657 -0.8692 35 1 1.7408 1.9415 0.9094 36 1 2.3401 -0.0794 -2.0206 37 1 1.3243 -1.4859 -1.5813 38 1 4.5505 -3.4267 1.0915 39 1 6.9745 -4.2739 1.6156 40 1 7.2876 -1.8602 -1.8824 41 1 3.7672 -2.1325 1.2355 42 1 2.2640 -2.8390 0.5663 43 1 3.8475 0.1831 1.6165 44 1 2.0370 -0.4194 3.8631 45 1 3.4470 -1.4069 3.4103 46 1 3.7566 -0.5204 5.9360 47 1 4.8420 -0.4184 9.0906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284298305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:25 Heat of formation + Delta-G solvation = -5.958509 kcal Electronic energy + Delta-G solvation = -29546.205937 eV Core-core repulsion = 25537.212485 eV Total energy + Delta-G solvation = -4008.993452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29276 -40.10367 -38.30197 -37.73932 -34.43072 -33.79306 -33.56182 -31.20917 -31.11351 -29.32791 -28.77602 -27.36937 -26.57103 -25.90267 -24.10535 -22.79531 -21.78950 -20.80698 -19.53689 -19.19721 -18.85516 -18.14385 -17.86406 -16.43823 -16.11119 -15.87294 -15.21615 -15.01385 -14.64077 -14.55360 -14.35616 -14.05484 -13.96588 -13.75440 -13.66133 -13.43455 -13.30230 -13.06136 -12.66395 -12.38067 -12.35462 -12.02048 -11.95483 -11.63631 -11.58933 -11.49944 -11.37429 -11.03811 -10.80285 -10.60090 -10.52433 -10.44386 -10.20743 -9.86476 -9.49358 -8.98601 -8.81532 -8.47969 -8.37833 -7.97672 -7.91430 -6.41422 -3.81880 1.73643 2.31886 2.87905 3.19798 3.23041 3.25313 3.29938 3.52384 3.92748 4.09255 4.31268 4.42535 4.58058 4.80320 4.93845 5.01443 5.05951 5.09990 5.18140 5.23086 5.26252 5.29774 5.37749 5.54404 5.57944 5.65669 5.71030 5.73447 5.78757 5.82809 5.85405 5.99066 6.05110 6.08593 6.18453 6.26540 6.32950 6.43458 6.57292 6.74509 6.77659 7.27361 7.29238 7.55366 7.60604 7.69537 8.07123 8.31367 8.62493 9.18817 9.55468 10.07481 10.76340 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010530 B = 0.003482 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.306281 B = 8039.099447 C = 9842.119429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.069 4.069 3 C -0.116 4.116 4 C 0.113 3.887 5 N -0.612 5.612 6 C 0.614 3.386 7 O -0.557 6.557 8 C -0.230 4.230 9 C -0.179 4.179 10 C -0.012 4.012 11 N -0.553 5.553 12 H 0.418 0.582 13 C 0.074 3.926 14 C 0.054 3.946 15 C 0.080 3.920 16 H 0.094 0.906 17 N -0.651 5.651 18 C 0.048 3.952 19 C 0.442 3.558 20 O -0.581 6.581 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.101 0.899 24 C 0.023 3.977 25 N -0.903 5.903 26 Si 0.929 3.071 27 H -0.273 1.273 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.152 0.848 39 H 0.170 0.830 40 H 0.176 0.824 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.352 0.648 44 H 0.086 0.914 45 H 0.042 0.958 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.979 -9.955 -14.912 18.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.071 4.071 3 C -0.174 4.174 4 C -0.010 4.010 5 N -0.345 5.345 6 C 0.405 3.595 7 O -0.437 6.437 8 C -0.240 4.240 9 C -0.203 4.203 10 C -0.140 4.140 11 N -0.147 5.147 12 H 0.254 0.746 13 C -0.063 4.063 14 C -0.071 4.071 15 C -0.032 4.032 16 H 0.113 0.887 17 N -0.282 5.282 18 C -0.085 4.085 19 C 0.227 3.773 20 O -0.465 6.465 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.119 0.881 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.756 3.244 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.200 1.200 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.169 0.831 39 H 0.187 0.813 40 H 0.193 0.807 41 H 0.116 0.884 42 H 0.091 0.909 43 H 0.173 0.827 44 H 0.104 0.896 45 H 0.060 0.940 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.787 -8.747 -15.535 18.045 hybrid contribution 1.256 -0.968 0.939 1.843 sum -1.532 -9.715 -14.596 17.600 Atomic orbital electron populations 1.21820 0.93454 1.01526 1.02400 1.21536 0.95536 0.96887 0.93098 1.21530 1.01099 0.93383 1.01371 1.22498 0.86092 0.95390 0.96975 1.48572 1.12816 1.55739 1.17351 1.16969 0.80097 0.78000 0.84399 1.90760 1.81838 1.52838 1.18246 1.20232 0.93258 1.09229 1.01280 1.22388 0.97380 1.02474 0.98013 1.21871 0.90136 1.05028 0.96982 1.41647 1.10641 1.39662 1.22735 0.74556 1.21772 0.91605 0.97195 0.95683 1.23701 1.00664 0.98234 0.84484 1.22678 0.96016 0.90442 0.94046 0.88746 1.60284 1.18578 1.48583 1.00795 1.21737 1.00465 0.96203 0.90054 1.19815 0.86089 0.88131 0.83224 1.90534 1.54543 1.30983 1.70469 1.41847 1.43599 1.26547 1.08153 1.19643 1.23503 1.07735 0.91901 0.88068 1.25229 0.98364 0.97229 0.97033 1.69600 1.44461 1.27084 1.13296 0.85944 0.80214 0.80016 0.78206 1.19883 1.20997 1.19999 0.91763 0.92437 0.92748 0.92647 0.94068 0.90850 0.89931 0.91425 0.83098 0.81265 0.80699 0.88449 0.90950 0.82672 0.89552 0.94014 0.77512 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 8.26 37.16 0.31 -0.90 16 2 C -0.07 -0.77 1.03 -153.11 -0.16 -0.93 16 3 C -0.12 -1.54 7.43 37.16 0.28 -1.26 16 4 C 0.11 1.32 6.13 -2.41 -0.01 1.30 16 5 N -0.61 -7.96 3.32 -170.62 -0.57 -8.53 16 6 C 0.61 9.36 7.89 -12.59 -0.10 9.26 16 7 O -0.56 -10.08 17.23 5.25 0.09 -9.99 16 8 C -0.23 -3.06 6.15 -103.35 -0.64 -3.70 16 9 C -0.18 -2.05 9.25 -37.50 -0.35 -2.40 16 10 C -0.01 -0.12 11.89 -16.83 -0.20 -0.32 16 11 N -0.55 -4.77 5.90 -12.85 -0.08 -4.84 16 12 H 0.42 2.14 8.96 -40.82 -0.37 1.78 16 13 C 0.07 0.82 11.73 -16.84 -0.20 0.63 16 14 C 0.05 0.60 5.37 -2.40 -0.01 0.58 16 15 C 0.08 0.94 2.99 -66.31 -0.20 0.74 16 16 H 0.09 0.99 7.44 -51.93 -0.39 0.60 16 17 N -0.65 -10.04 4.16 -106.51 -0.44 -10.49 16 18 C 0.05 0.80 5.97 -4.97 -0.03 0.77 16 19 C 0.44 10.18 7.82 -10.98 -0.09 10.10 16 20 O -0.58 -15.65 15.78 5.55 0.09 -15.56 16 21 N -0.56 -14.01 5.29 -10.96 -0.06 -14.07 16 22 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 23 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 26 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.42 8.10 -51.93 -0.42 0.00 16 33 H 0.05 0.85 7.48 -51.92 -0.39 0.46 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 1.08 7.84 -51.93 -0.41 0.68 16 36 H 0.08 1.07 7.62 -51.93 -0.40 0.67 16 37 H 0.07 0.68 7.83 -51.93 -0.41 0.28 16 38 H 0.15 1.55 5.54 -52.49 -0.29 1.25 16 39 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 40 H 0.18 1.66 8.06 -52.48 -0.42 1.24 16 41 H 0.10 1.13 4.14 -51.93 -0.21 0.92 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.35 6.16 7.66 -39.29 -0.30 5.86 16 44 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 45 H 0.04 0.61 7.80 -51.93 -0.40 0.21 16 46 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 47 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 LS Contribution 383.20 15.07 5.77 5.77 Total: -1.00 -34.53 383.20 -7.89 -42.43 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -6.77 Total: 16.86 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -1.64 Total: 6.01 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -0.42 Total: -61.41 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: 0.18 Total: -25.55 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.53 -7.89 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284298305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.468 kcal (2) G-P(sol) polarization free energy of solvation -34.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds