Wall clock time and date at job start Tue Mar 31 2020 19:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 113.01982 * 2 1 4 4 C 1.53947 * 113.73923 * 131.66499 * 2 1 3 5 5 N 1.47583 * 86.11463 * 137.95129 * 4 2 1 6 6 C 1.34780 * 134.48847 * 155.36171 * 5 4 2 7 7 O 1.21362 * 119.99750 * 179.97438 * 6 5 4 8 8 C 1.49341 * 119.99909 * 359.97438 * 6 5 4 9 9 O 1.21383 * 120.00617 * 0.02562 * 8 6 5 10 10 N 1.34774 * 119.99614 * 180.02562 * 8 6 5 11 11 C 1.39932 * 120.00010 * 179.97438 * 10 8 6 12 12 C 1.40456 * 125.98142 * 359.72079 * 11 10 8 13 13 C 1.35211 * 107.87036 * 179.82140 * 12 11 10 14 14 N 1.34989 * 107.87670 * 0.43261 * 13 12 11 15 15 C 1.46496 * 125.97457 * 179.72401 * 14 13 12 16 16 C 1.50700 * 109.46901 * 124.97266 * 15 14 13 17 17 H 1.07999 * 120.00550 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99795 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99819 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 120.00106 * 0.02562 * 18 16 15 21 21 H 1.48509 * 109.47417 * 89.99773 * 20 18 16 22 22 H 1.48494 * 109.47273 * 209.99755 * 20 18 16 23 23 H 1.48499 * 109.47488 * 329.99970 * 20 18 16 24 24 N 1.31278 * 125.98144 * 180.02562 * 11 10 8 25 25 C 1.47573 * 91.01675 * 335.35748 * 5 4 2 26 26 C 1.52999 * 113.77225 * 270.34210 * 25 5 4 27 27 C 1.52999 * 113.77233 * 138.94080 * 25 5 4 28 28 H 1.09003 * 109.46912 * 307.84479 * 1 2 3 29 29 H 1.09007 * 109.46823 * 67.84029 * 1 2 3 30 30 H 1.08991 * 109.47139 * 187.84140 * 1 2 3 31 31 H 1.09001 * 109.47344 * 172.15715 * 3 2 1 32 32 H 1.09000 * 109.47732 * 292.15940 * 3 2 1 33 33 H 1.09007 * 109.47196 * 52.15537 * 3 2 1 34 34 H 1.08996 * 113.76588 * 252.25299 * 4 2 1 35 35 H 1.09000 * 113.77114 * 23.64637 * 4 2 1 36 36 H 0.97001 * 120.00608 * 0.02562 * 10 8 6 37 37 H 1.08003 * 126.06617 * 359.96327 * 12 11 10 38 38 H 1.08004 * 126.06148 * 180.12964 * 13 12 11 39 39 H 1.09000 * 109.47323 * 244.97330 * 15 14 13 40 40 H 1.08994 * 109.46990 * 4.97509 * 15 14 13 41 41 H 0.97006 * 119.99981 * 179.97438 * 19 18 16 42 42 H 1.08993 * 109.47535 * 156.49518 * 26 25 5 43 43 H 1.09001 * 109.47042 * 276.49580 * 26 25 5 44 44 H 1.09001 * 109.47241 * 36.49368 * 26 25 5 45 45 H 1.09000 * 109.46747 * 323.51259 * 27 25 5 46 46 H 1.09006 * 109.46981 * 83.50524 * 27 25 5 47 47 H 1.08994 * 109.47689 * 203.50847 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1283 1.4081 0.0000 4 6 2.1498 -0.9368 1.0527 5 7 3.1104 -1.3201 -0.0001 6 6 4.3622 -1.8196 0.0000 7 8 4.9257 -2.0449 -1.0510 8 6 5.0559 -2.0959 1.2934 9 8 4.4922 -1.8710 2.3446 10 7 6.3078 -2.5949 1.2933 11 6 6.9580 -2.8533 2.5052 12 6 6.4293 -2.6358 3.7881 13 6 7.3623 -3.0136 4.6909 14 7 8.4458 -3.4452 4.0112 15 6 9.6912 -3.9409 4.6022 16 6 9.9927 -5.3142 4.0600 17 1 9.3234 -5.7723 3.3468 18 6 11.1232 -5.9861 4.4744 19 7 11.3861 -7.1848 4.0016 20 14 12.2806 -5.1943 5.7083 21 1 11.8610 -5.5590 7.0854 22 1 13.6646 -5.6761 5.4687 23 1 12.2364 -3.7182 5.5521 24 7 8.1711 -3.3362 2.6420 25 6 2.1498 -0.9368 -1.0528 26 6 1.2240 -2.0748 -1.4869 27 6 2.7887 -0.2015 -2.2326 28 1 -0.3633 0.6305 0.8116 29 1 -0.3633 0.3877 -0.9518 30 1 -0.3633 -1.0180 0.1402 31 1 3.2074 1.3444 0.1402 32 1 1.9137 1.8942 -0.9517 33 1 1.6901 1.9891 0.8116 34 1 2.6050 -0.4130 1.8932 35 1 1.4902 -1.7476 1.3620 36 1 6.7585 -2.7743 0.4533 37 1 5.4503 -2.2394 4.0136 38 1 7.2607 -2.9723 5.7654 39 1 10.5075 -3.2637 4.3507 40 1 9.5835 -3.9935 5.6855 41 1 12.1816 -7.6573 4.2928 42 1 0.3144 -1.6584 -1.9195 43 1 1.7301 -2.6917 -2.2295 44 1 0.9679 -2.6853 -0.6209 45 1 3.5849 0.4476 -1.8680 46 1 3.2036 -0.9277 -2.9317 47 1 2.0331 0.3994 -2.7386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320598493.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:46 Heat of formation + Delta-G solvation = 31.948136 kcal Electronic energy + Delta-G solvation = -28765.062485 eV Core-core repulsion = 24757.712789 eV Total energy + Delta-G solvation = -4007.349697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.63671 -42.14685 -40.77875 -39.13715 -36.49105 -35.26021 -33.57786 -33.16469 -32.54812 -31.08638 -29.75243 -29.31730 -28.20338 -26.94449 -25.92811 -24.37456 -23.64779 -22.43650 -21.53426 -20.67624 -19.16286 -19.09485 -18.47451 -18.15262 -17.56316 -17.29360 -16.91380 -16.74675 -16.39721 -16.02021 -15.94741 -15.40065 -15.12506 -14.89631 -14.69477 -14.54855 -14.41671 -13.92264 -13.90524 -13.49339 -13.38400 -13.30654 -13.10361 -12.89791 -12.81183 -12.76202 -12.64083 -12.53102 -12.51248 -12.39553 -12.03455 -11.84747 -11.79362 -11.70421 -11.49804 -11.02415 -10.88313 -10.58911 -9.94620 -9.86898 -9.23440 -8.38849 -6.49798 0.02972 0.75427 1.09193 1.35574 1.38923 1.48635 1.68435 1.72490 2.22672 2.28119 2.33955 2.93604 3.01504 3.18638 3.70242 3.81897 3.84191 3.92046 4.11867 4.14918 4.25675 4.31407 4.53290 4.62987 4.66529 4.69393 4.75868 4.80220 4.81097 4.81705 4.84981 4.87940 4.92389 5.02530 5.05756 5.10848 5.14477 5.21860 5.21980 5.26703 5.39587 5.55806 5.71060 5.85409 5.96334 6.31851 6.35951 6.42589 6.56097 6.76465 6.90002 7.13077 8.78417 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.029273 B = 0.002185 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.278062 B =12811.361739 C =13212.149955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 C -0.128 4.128 4 C 0.106 3.894 5 N -0.607 5.607 6 C 0.534 3.466 7 O -0.544 6.544 8 C 0.517 3.483 9 O -0.501 6.501 10 N -0.606 5.606 11 C 0.258 3.742 12 C -0.288 4.288 13 C 0.066 3.934 14 N -0.340 5.340 15 C 0.238 3.762 16 C -0.549 4.549 17 H 0.024 0.976 18 C 0.013 3.987 19 N -0.943 5.943 20 Si 0.958 3.042 21 H -0.251 1.251 22 H -0.282 1.282 23 H -0.238 1.238 24 N -0.345 5.345 25 C 0.157 3.843 26 C -0.147 4.147 27 C -0.144 4.144 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.425 0.575 37 H 0.177 0.823 38 H 0.218 0.782 39 H 0.047 0.953 40 H 0.087 0.913 41 H 0.272 0.728 42 H 0.108 0.892 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.050 0.950 46 H 0.048 0.952 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.807 19.719 -5.734 32.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.078 4.078 3 C -0.185 4.185 4 C -0.016 4.016 5 N -0.342 5.342 6 C 0.317 3.683 7 O -0.423 6.423 8 C 0.298 3.702 9 O -0.374 6.374 10 N -0.255 5.255 11 C 0.004 3.996 12 C -0.318 4.318 13 C -0.082 4.082 14 N -0.122 5.122 15 C 0.119 3.881 16 C -0.587 4.587 17 H 0.042 0.958 18 C -0.186 4.186 19 N -0.581 5.581 20 Si 0.778 3.222 21 H -0.175 1.175 22 H -0.207 1.207 23 H -0.162 1.162 24 N -0.176 5.176 25 C 0.076 3.924 26 C -0.204 4.204 27 C -0.201 4.201 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.262 0.738 37 H 0.194 0.806 38 H 0.235 0.765 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.126 0.874 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.482 19.093 -6.101 31.640 hybrid contribution 0.894 -0.644 0.084 1.104 sum -23.588 18.449 -6.017 30.545 Atomic orbital electron populations 1.21758 0.90129 1.03407 1.03758 1.22471 0.97742 0.94602 0.92975 1.21602 0.99528 0.93699 1.03634 1.23765 0.87965 0.97268 0.92555 1.50298 1.10676 1.59257 1.13930 1.19258 0.82810 0.78568 0.87699 1.90766 1.66050 1.52410 1.33039 1.20394 0.81026 0.78128 0.90632 1.90635 1.64735 1.49391 1.32613 1.42186 1.14659 1.61449 1.07182 1.19388 0.92212 1.00463 0.87559 1.21776 1.04119 1.17282 0.88659 1.23345 0.86242 0.97433 1.01165 1.48590 1.14341 1.47305 1.01933 1.19943 0.79666 0.93733 0.94789 1.21234 1.09643 1.00727 1.27142 0.95759 1.25969 0.99018 0.95065 0.98571 1.70061 1.28068 1.14559 1.45458 0.85583 0.77388 0.80255 0.78938 1.17459 1.20745 1.16154 1.77386 1.15526 1.26820 0.97854 1.22749 0.85538 0.94062 0.90092 1.22004 0.99642 0.96777 1.01994 1.21890 1.01275 1.00226 0.96735 0.90763 0.90401 0.91145 0.94538 0.90413 0.90433 0.89340 0.87808 0.73762 0.80614 0.76515 0.93557 0.89498 0.91861 0.87353 0.93031 0.91537 0.93103 0.93238 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.58 8.06 71.98 0.58 0.00 16 2 C -0.08 -0.77 1.31 -51.52 -0.07 -0.84 16 3 C -0.13 -1.28 7.90 71.98 0.57 -0.71 16 4 C 0.11 1.61 6.49 86.48 0.56 2.17 16 5 N -0.61 -12.80 3.15 -790.37 -2.49 -15.29 16 6 C 0.53 15.25 8.01 87.23 0.70 15.95 16 7 O -0.54 -17.95 16.65 -3.28 -0.05 -18.00 16 8 C 0.52 16.41 7.85 87.24 0.68 17.10 16 9 O -0.50 -15.98 12.20 -3.35 -0.04 -16.02 16 10 N -0.61 -21.63 5.43 -308.90 -1.68 -23.30 16 11 C 0.26 10.69 8.10 133.40 1.08 11.77 16 12 C -0.29 -10.63 9.60 22.11 0.21 -10.42 16 13 C 0.07 2.37 11.43 83.51 0.95 3.32 16 14 N -0.34 -15.27 3.67 -351.86 -1.29 -16.56 16 15 C 0.24 11.02 5.33 85.63 0.46 11.48 16 16 C -0.55 -32.06 9.79 25.60 0.25 -31.81 16 17 H 0.02 1.66 8.06 -2.91 -0.02 1.64 16 18 C 0.01 0.71 5.47 84.66 0.46 1.18 16 19 N -0.94 -58.79 13.96 21.45 0.30 -58.49 16 20 Si 0.96 40.81 27.47 68.60 1.88 42.70 16 21 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.24 -9.13 6.54 99.48 0.65 -8.47 16 24 N -0.34 -16.63 12.42 -54.54 -0.68 -17.30 16 25 C 0.16 2.28 1.49 3.71 0.01 2.29 16 26 C -0.15 -1.67 8.07 71.98 0.58 -1.09 16 27 C -0.14 -2.15 7.63 71.98 0.55 -1.60 16 28 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.08 0.17 8.14 -2.38 -0.02 0.15 16 30 H 0.07 0.26 7.01 -2.39 -0.02 0.24 16 31 H 0.04 0.55 7.71 -2.39 -0.02 0.53 16 32 H 0.08 0.59 7.57 -2.39 -0.02 0.57 16 33 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.09 1.52 7.36 -2.39 -0.02 1.51 16 35 H 0.10 1.32 7.64 -2.39 -0.02 1.30 16 36 H 0.42 14.62 8.29 -92.71 -0.77 13.85 16 37 H 0.18 5.94 5.91 -2.91 -0.02 5.92 16 38 H 0.22 5.41 8.06 -2.91 -0.02 5.38 16 39 H 0.05 2.10 7.20 -2.39 -0.02 2.09 16 40 H 0.09 3.38 7.50 -2.39 -0.02 3.36 16 41 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 42 H 0.11 0.59 7.41 -2.39 -0.02 0.57 16 43 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 0.76 7.35 -2.39 -0.02 0.74 16 45 H 0.05 0.92 7.26 -2.39 -0.02 0.90 16 46 H 0.05 0.92 8.14 -2.38 -0.02 0.91 16 47 H 0.10 0.87 8.06 -2.39 -0.02 0.86 16 Total: -1.00 -79.22 383.66 3.70 -75.52 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.17 Total: 27.97 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 7.58 Total: 18.78 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -5.84 Total: -130.94 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -0.10 Total: -34.02 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.88 Total: 42.70 kcal Total: -79.22 3.70 -75.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320598493.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.464 kcal (2) G-P(sol) polarization free energy of solvation -79.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds