Wall clock time and date at job start Tue Mar 31 2020 19:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32169 * 119.14260 * 2 1 4 4 C 1.32369 * 120.60472 * 180.26701 * 3 2 1 5 5 C 1.47496 * 120.50916 * 179.72013 * 4 3 2 6 6 O 1.21600 * 120.00196 * 207.83706 * 5 4 3 7 7 N 1.34780 * 120.00123 * 27.83724 * 5 4 3 8 8 C 1.46928 * 120.63021 * 358.08481 * 7 5 4 9 9 C 1.53189 * 108.77387 * 126.41570 * 8 7 5 10 10 C 1.53039 * 109.31562 * 54.63782 * 9 8 7 11 11 C 1.52993 * 109.46237 * 178.62709 * 10 9 8 12 12 N 1.46498 * 109.45971 * 58.64884 * 10 9 8 13 13 C 1.36936 * 119.99687 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00168 * 0.02562 * 13 12 10 15 15 C 1.38820 * 119.99679 * 180.02562 * 13 12 10 16 16 N 1.31616 * 120.00050 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99629 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46996 * 269.99932 * 17 15 13 19 19 H 1.48492 * 109.47480 * 29.99952 * 17 15 13 20 20 H 1.48497 * 109.47092 * 150.00255 * 17 15 13 21 21 C 1.53041 * 109.53624 * 298.63373 * 10 9 8 22 22 C 1.46928 * 120.63214 * 178.10874 * 7 5 4 23 23 C 1.46680 * 118.98036 * 359.44042 * 4 3 2 24 24 O 1.21860 * 120.78295 * 180.25369 * 23 4 3 25 25 N 1.35148 * 118.43019 * 0.28218 * 23 4 3 26 26 H 0.97005 * 120.36486 * 180.02562 * 25 23 4 27 27 C 1.34898 * 119.26902 * 359.97438 * 25 23 4 28 28 C 1.50701 * 119.50245 * 179.97438 * 27 25 23 29 29 H 1.09001 * 109.47520 * 270.29366 * 1 2 3 30 30 H 1.09000 * 109.47311 * 30.30035 * 1 2 3 31 31 H 1.09006 * 109.47297 * 150.29987 * 1 2 3 32 32 H 1.08996 * 109.58331 * 6.62399 * 8 7 5 33 33 H 1.09004 * 109.70344 * 246.27100 * 8 7 5 34 34 H 1.08998 * 109.49969 * 294.68030 * 9 8 7 35 35 H 1.09009 * 109.51906 * 174.60272 * 9 8 7 36 36 H 1.09007 * 109.47162 * 300.02978 * 11 10 9 37 37 H 1.09002 * 109.47502 * 60.02274 * 11 10 9 38 38 H 1.08996 * 109.47289 * 180.02562 * 11 10 9 39 39 H 0.96995 * 120.00289 * 0.02562 * 12 10 9 40 40 H 0.97001 * 119.99536 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.49980 * 181.31939 * 21 10 9 42 42 H 1.09004 * 109.49303 * 301.41551 * 21 10 9 43 43 H 1.08997 * 109.58693 * 353.37271 * 22 7 5 44 44 H 1.08998 * 109.58329 * 113.79760 * 22 7 5 45 45 H 1.09000 * 109.47060 * 359.97438 * 28 27 25 46 46 H 1.08995 * 109.47002 * 120.00001 * 28 27 25 47 47 H 1.09000 * 109.46845 * 239.99535 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1882 -0.0053 5 6 4.1899 2.4776 -0.0115 6 8 5.2973 2.5558 -0.5078 7 7 3.6170 3.5693 0.5330 8 6 2.2628 3.5005 1.0989 9 6 2.3017 4.0289 2.5362 10 6 2.9156 5.4308 2.5438 11 6 2.9247 5.9756 3.9734 12 7 2.1208 6.3162 1.6891 13 6 2.4815 7.6287 1.5399 14 1 3.3521 8.0111 2.0520 15 6 1.7281 8.4679 0.7304 16 7 0.6668 8.0020 0.1067 17 14 2.2206 10.2582 0.5264 18 1 1.5543 11.0770 1.5709 19 1 3.6938 10.3850 0.6630 20 1 1.8050 10.7359 -0.8169 21 6 4.3501 5.3642 2.0147 22 6 4.3344 4.8509 0.5714 23 6 4.2171 -0.0764 0.0013 24 8 5.4356 -0.0836 0.0014 25 7 3.5185 -1.2333 0.0068 26 1 3.9815 -2.0857 0.0116 27 6 2.1702 -1.1896 0.0065 28 6 1.3859 -2.4764 0.0121 29 1 -0.3634 0.0053 1.0276 30 1 -0.3634 0.8873 -0.5185 31 1 -0.3634 -0.8927 -0.5092 32 1 1.9189 2.4662 1.0989 33 1 1.5841 4.1112 0.5033 34 1 2.9066 3.3635 3.1522 35 1 1.2884 4.0733 2.9355 36 1 1.9031 6.0237 4.3505 37 1 3.5160 5.3169 4.6095 38 1 3.3615 6.9742 3.9789 39 1 1.3391 5.9727 1.2288 40 1 0.1406 8.5884 -0.4592 41 1 4.7946 6.3590 2.0422 42 1 4.9357 4.6861 2.6356 43 1 5.3574 4.7076 0.2234 44 1 3.8266 5.5732 -0.0678 45 1 2.0744 -3.3215 0.0153 46 1 0.7581 -2.5154 0.9022 47 1 0.7581 -2.5231 -0.8777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327994841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:23 Heat of formation + Delta-G solvation = -1.419725 kcal Electronic energy + Delta-G solvation = -30237.756378 eV Core-core repulsion = 26228.959742 eV Total energy + Delta-G solvation = -4008.796636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.01181 -39.67154 -38.23312 -37.54337 -35.76529 -34.31015 -33.35782 -32.20750 -30.63942 -29.56981 -28.91658 -27.80821 -26.75701 -24.98695 -23.87996 -23.76146 -22.61855 -22.13647 -20.08714 -18.99356 -18.58087 -17.78119 -17.01123 -16.81855 -16.44633 -15.83807 -15.56666 -14.87264 -14.56592 -14.41959 -14.28653 -13.87765 -13.81165 -13.62704 -13.60886 -13.43803 -13.24595 -13.07463 -12.76657 -12.41474 -12.31778 -12.22738 -11.94280 -11.55664 -11.46575 -11.24888 -11.17387 -11.08617 -10.82711 -10.72426 -10.50540 -10.25503 -10.03663 -10.00084 -9.69036 -9.48373 -8.98388 -8.85886 -8.29195 -8.00092 -6.88702 -5.71164 -2.98580 -0.04698 1.42581 2.13256 2.72629 3.25515 3.47222 3.47895 3.53562 3.54220 3.75393 3.99270 4.03082 4.32841 4.64034 4.74642 4.78144 4.93845 5.13542 5.18510 5.38018 5.40463 5.48706 5.49841 5.56223 5.70102 5.77866 5.83271 5.91575 5.98649 6.05502 6.10110 6.17949 6.25557 6.37908 6.45254 6.50887 6.57966 6.62379 6.76176 6.88194 7.00196 7.12776 7.18657 7.29437 7.52793 7.77886 7.85831 8.47520 8.50587 9.59331 10.16505 10.52261 11.51515 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.003338 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.558526 B = 8386.674769 C = 8901.899580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.032 4.032 3 N -0.341 5.341 4 C 0.019 3.981 5 C 0.577 3.423 6 O -0.525 6.525 7 N -0.577 5.577 8 C 0.093 3.907 9 C -0.131 4.131 10 C 0.197 3.803 11 C -0.149 4.149 12 N -0.715 5.715 13 C -0.229 4.229 14 H 0.070 0.930 15 C -0.013 4.013 16 N -0.933 5.933 17 Si 0.901 3.099 18 H -0.292 1.292 19 H -0.283 1.283 20 H -0.293 1.293 21 C -0.133 4.133 22 C 0.122 3.878 23 C 0.498 3.502 24 O -0.490 6.490 25 N -0.587 5.587 26 H 0.420 0.580 27 C 0.145 3.855 28 C -0.126 4.126 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.034 0.966 38 H 0.055 0.945 39 H 0.384 0.616 40 H 0.253 0.747 41 H 0.075 0.925 42 H 0.047 0.953 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.100 0.900 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.754 -23.948 2.430 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.157 4.157 3 N -0.059 5.059 4 C -0.150 4.150 5 C 0.362 3.638 6 O -0.400 6.400 7 N -0.308 5.308 8 C -0.030 4.030 9 C -0.170 4.170 10 C 0.105 3.895 11 C -0.209 4.209 12 N -0.358 5.358 13 C -0.360 4.360 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.581 5.581 17 Si 0.732 3.268 18 H -0.220 1.220 19 H -0.208 1.208 20 H -0.220 1.220 21 C -0.174 4.174 22 C 0.000 4.000 23 C 0.290 3.710 24 O -0.362 6.362 25 N -0.223 5.223 26 H 0.260 0.740 27 C 0.030 3.970 28 C -0.183 4.183 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.129 0.871 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.219 0.781 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.095 0.905 46 H 0.119 0.881 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.876 -22.934 2.147 23.110 hybrid contribution 0.484 -0.109 -0.195 0.533 sum -1.392 -23.043 1.951 23.167 Atomic orbital electron populations 1.20564 0.86779 1.03918 1.03247 1.20305 0.98128 0.85746 1.11519 1.67782 1.08245 1.28215 1.01644 1.24052 0.88909 0.94025 1.07974 1.17050 0.84884 0.81850 0.80015 1.90830 1.19094 1.84140 1.45946 1.47917 1.17157 1.09113 1.56643 1.22459 0.82713 1.03942 0.93863 1.22130 1.01364 0.97049 0.96465 1.19547 0.90367 0.88930 0.90644 1.22219 1.00687 1.00761 0.97219 1.42485 1.31518 1.07215 1.54545 1.19128 1.08243 0.86132 1.22519 0.91211 1.24672 0.97897 0.97865 1.00416 1.69648 1.18656 1.34873 1.34951 0.86280 0.77750 0.85778 0.76945 1.21984 1.20842 1.21964 1.22311 0.99013 1.00764 0.95284 1.21657 0.97028 0.82881 0.98394 1.19052 0.88374 0.83928 0.79619 1.91041 1.11532 1.85394 1.48238 1.43709 1.06375 1.11844 1.60331 0.74005 1.21495 0.83442 0.98921 0.93116 1.21184 1.00432 0.91365 1.05331 0.90540 0.89802 0.90811 0.87101 0.90107 0.92384 0.90886 0.93217 0.94696 0.92589 0.78133 0.93686 0.90646 0.93433 0.90419 0.89193 0.90472 0.88141 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 9.65 36.00 0.35 -0.18 16 2 C -0.03 -0.29 6.70 -83.18 -0.56 -0.85 16 3 N -0.34 -4.51 6.66 -4.84 -0.03 -4.54 16 4 C 0.02 0.29 6.52 -80.46 -0.52 -0.23 16 5 C 0.58 11.18 7.52 -12.49 -0.09 11.09 16 6 O -0.52 -11.87 15.39 -12.09 -0.19 -12.06 16 7 N -0.58 -10.74 2.97 -174.01 -0.52 -11.25 16 8 C 0.09 1.55 5.74 -3.71 -0.02 1.53 16 9 C -0.13 -2.16 4.96 -26.61 -0.13 -2.29 16 10 C 0.20 3.76 0.74 -131.78 -0.10 3.67 16 11 C -0.15 -2.71 8.44 37.15 0.31 -2.40 16 12 N -0.72 -16.70 4.13 -47.20 -0.20 -16.90 16 13 C -0.23 -6.00 8.68 -15.06 -0.13 -6.13 16 14 H 0.07 1.81 6.70 -52.49 -0.35 1.45 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 16 N -0.93 -27.31 13.06 55.49 0.72 -26.58 16 17 Si 0.90 22.22 29.55 -169.99 -5.02 17.20 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 21 C -0.13 -2.52 4.70 -26.61 -0.13 -2.65 16 22 C 0.12 2.41 6.17 -3.71 -0.02 2.39 16 23 C 0.50 7.27 7.90 -12.69 -0.10 7.17 16 24 O -0.49 -9.06 16.75 -12.32 -0.21 -9.27 16 25 N -0.59 -5.12 5.29 -9.45 -0.05 -5.17 16 26 H 0.42 2.34 8.64 -40.82 -0.35 1.99 16 27 C 0.15 0.98 6.78 -81.98 -0.56 0.42 16 28 C -0.13 -0.23 8.83 36.01 0.32 0.09 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.23 6.43 -51.93 -0.33 -0.10 16 32 H 0.11 1.66 4.16 -63.90 -0.27 1.39 16 33 H 0.08 1.51 6.94 -51.93 -0.36 1.15 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 1.08 7.27 -51.93 -0.38 0.71 16 39 H 0.38 9.59 6.46 -40.82 -0.26 9.33 16 40 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.07 1.49 7.31 -51.93 -0.38 1.11 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.55 7.01 -51.93 -0.36 1.19 16 44 H 0.09 2.01 7.74 -51.93 -0.40 1.61 16 45 H 0.08 0.03 7.90 -51.93 -0.41 -0.38 16 46 H 0.10 0.07 8.09 -51.93 -0.42 -0.35 16 47 H 0.10 0.08 7.36 -51.93 -0.38 -0.30 16 LS Contribution 371.29 15.07 5.60 5.60 Total: -1.00 -35.79 371.29 -8.13 -43.92 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.76 Total: 7.87 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: -1.48 Total: 11.18 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -0.07 Total: -64.44 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.39 Total: -21.32 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.79 -8.13 -43.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327994841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.496 kcal (2) G-P(sol) polarization free energy of solvation -35.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds