Wall clock time and date at job start Tue Mar 31 2020 19:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32169 * 119.14260 * 2 1 4 4 C 1.32369 * 120.60472 * 180.26701 * 3 2 1 5 5 C 1.47496 * 120.50916 * 179.72013 * 4 3 2 6 6 O 1.21600 * 120.00196 * 207.83706 * 5 4 3 7 7 N 1.34780 * 120.00123 * 27.83724 * 5 4 3 8 8 C 1.46928 * 120.63021 * 358.08481 * 7 5 4 9 9 C 1.53189 * 108.77387 * 126.41570 * 8 7 5 10 10 C 1.53039 * 109.31562 * 54.63782 * 9 8 7 11 11 C 1.52993 * 109.46237 * 178.62709 * 10 9 8 12 12 N 1.46498 * 109.45971 * 58.64884 * 10 9 8 13 13 C 1.36936 * 119.99687 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00168 * 0.02562 * 13 12 10 15 15 C 1.38820 * 119.99679 * 180.02562 * 13 12 10 16 16 N 1.31616 * 120.00050 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99629 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46996 * 269.99932 * 17 15 13 19 19 H 1.48492 * 109.47480 * 29.99952 * 17 15 13 20 20 H 1.48497 * 109.47092 * 150.00255 * 17 15 13 21 21 C 1.53041 * 109.53624 * 298.63373 * 10 9 8 22 22 C 1.46928 * 120.63214 * 178.10874 * 7 5 4 23 23 C 1.46680 * 118.98036 * 359.44042 * 4 3 2 24 24 O 1.21860 * 120.78295 * 180.25369 * 23 4 3 25 25 N 1.35148 * 118.43019 * 0.28218 * 23 4 3 26 26 H 0.97005 * 120.36486 * 180.02562 * 25 23 4 27 27 C 1.34898 * 119.26902 * 359.97438 * 25 23 4 28 28 C 1.50701 * 119.50245 * 179.97438 * 27 25 23 29 29 H 1.09001 * 109.47520 * 270.29366 * 1 2 3 30 30 H 1.09000 * 109.47311 * 30.30035 * 1 2 3 31 31 H 1.09006 * 109.47297 * 150.29987 * 1 2 3 32 32 H 1.08996 * 109.58331 * 6.62399 * 8 7 5 33 33 H 1.09004 * 109.70344 * 246.27100 * 8 7 5 34 34 H 1.08998 * 109.49969 * 294.68030 * 9 8 7 35 35 H 1.09009 * 109.51906 * 174.60272 * 9 8 7 36 36 H 1.09007 * 109.47162 * 300.02978 * 11 10 9 37 37 H 1.09002 * 109.47502 * 60.02274 * 11 10 9 38 38 H 1.08996 * 109.47289 * 180.02562 * 11 10 9 39 39 H 0.96995 * 120.00289 * 0.02562 * 12 10 9 40 40 H 0.97001 * 119.99536 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.49980 * 181.31939 * 21 10 9 42 42 H 1.09004 * 109.49303 * 301.41551 * 21 10 9 43 43 H 1.08997 * 109.58693 * 353.37271 * 22 7 5 44 44 H 1.08998 * 109.58329 * 113.79760 * 22 7 5 45 45 H 1.09000 * 109.47060 * 359.97438 * 28 27 25 46 46 H 1.08995 * 109.47002 * 120.00001 * 28 27 25 47 47 H 1.09000 * 109.46845 * 239.99535 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1882 -0.0053 5 6 4.1899 2.4776 -0.0115 6 8 5.2973 2.5558 -0.5078 7 7 3.6170 3.5693 0.5330 8 6 2.2628 3.5005 1.0989 9 6 2.3017 4.0289 2.5362 10 6 2.9156 5.4308 2.5438 11 6 2.9247 5.9756 3.9734 12 7 2.1208 6.3162 1.6891 13 6 2.4815 7.6287 1.5399 14 1 3.3521 8.0111 2.0520 15 6 1.7281 8.4679 0.7304 16 7 0.6668 8.0020 0.1067 17 14 2.2206 10.2582 0.5264 18 1 1.5543 11.0770 1.5709 19 1 3.6938 10.3850 0.6630 20 1 1.8050 10.7359 -0.8169 21 6 4.3501 5.3642 2.0147 22 6 4.3344 4.8509 0.5714 23 6 4.2171 -0.0764 0.0013 24 8 5.4356 -0.0836 0.0014 25 7 3.5185 -1.2333 0.0068 26 1 3.9815 -2.0857 0.0116 27 6 2.1702 -1.1896 0.0065 28 6 1.3859 -2.4764 0.0121 29 1 -0.3634 0.0053 1.0276 30 1 -0.3634 0.8873 -0.5185 31 1 -0.3634 -0.8927 -0.5092 32 1 1.9189 2.4662 1.0989 33 1 1.5841 4.1112 0.5033 34 1 2.9066 3.3635 3.1522 35 1 1.2884 4.0733 2.9355 36 1 1.9031 6.0237 4.3505 37 1 3.5160 5.3169 4.6095 38 1 3.3615 6.9742 3.9789 39 1 1.3391 5.9727 1.2288 40 1 0.1406 8.5884 -0.4592 41 1 4.7946 6.3590 2.0422 42 1 4.9357 4.6861 2.6356 43 1 5.3574 4.7076 0.2234 44 1 3.8266 5.5732 -0.0678 45 1 2.0744 -3.3215 0.0153 46 1 0.7581 -2.5154 0.9022 47 1 0.7581 -2.5231 -0.8777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327994841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:22 Heat of formation + Delta-G solvation = -27.560270 kcal Electronic energy + Delta-G solvation = -30238.889917 eV Core-core repulsion = 26228.959742 eV Total energy + Delta-G solvation = -4009.930175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.95616 -41.10354 -39.37724 -38.97032 -36.75862 -35.91169 -34.25836 -33.95486 -32.08279 -30.92356 -30.09968 -29.10413 -27.74402 -25.90581 -25.64015 -24.96332 -24.09095 -23.37315 -21.37591 -20.12172 -19.71077 -19.10183 -18.96410 -17.96272 -17.40916 -17.01768 -16.95040 -16.47877 -16.12887 -15.60361 -15.49981 -15.22143 -15.03783 -14.87233 -14.74084 -14.41624 -14.29169 -13.99362 -13.84535 -13.81833 -13.40288 -13.21427 -12.83903 -12.76606 -12.68964 -12.68346 -12.63554 -12.54450 -12.38341 -12.34868 -12.13982 -11.94421 -11.75173 -11.43787 -11.38332 -11.14749 -10.83238 -10.17994 -9.66126 -9.05737 -8.86363 -7.84137 -5.08914 -0.94424 0.48470 1.20793 1.48984 1.50271 1.53993 1.57149 2.02985 2.41596 2.62017 2.90865 3.01368 3.43546 3.49540 3.68123 3.77434 3.87573 3.98186 4.10563 4.26600 4.31230 4.49685 4.54160 4.62841 4.65397 4.69557 4.76980 4.88944 4.91521 4.99223 5.00510 5.05281 5.09079 5.10156 5.12350 5.15974 5.23650 5.27657 5.36933 5.39043 5.54618 5.61187 5.66221 5.69558 6.36324 6.38550 6.46218 6.58592 7.08853 7.45986 8.22029 8.46550 9.39403 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.003338 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.558526 B = 8386.674769 C = 8901.899580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.053 4.053 3 N -0.338 5.338 4 C -0.059 4.059 5 C 0.574 3.426 6 O -0.575 6.575 7 N -0.581 5.581 8 C 0.101 3.899 9 C -0.123 4.123 10 C 0.188 3.812 11 C -0.142 4.142 12 N -0.721 5.721 13 C -0.213 4.213 14 H 0.072 0.928 15 C -0.074 4.074 16 N -0.967 5.967 17 Si 0.956 3.044 18 H -0.290 1.290 19 H -0.275 1.275 20 H -0.302 1.302 21 C -0.125 4.125 22 C 0.128 3.872 23 C 0.496 3.504 24 O -0.546 6.546 25 N -0.561 5.561 26 H 0.440 0.560 27 C 0.202 3.798 28 C -0.130 4.130 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.113 0.887 32 H 0.135 0.865 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.065 0.935 38 H 0.038 0.962 39 H 0.374 0.626 40 H 0.246 0.754 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.102 0.898 46 H 0.131 0.869 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 -28.185 3.915 28.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.182 4.182 3 N -0.056 5.056 4 C -0.219 4.219 5 C 0.362 3.638 6 O -0.455 6.455 7 N -0.312 5.312 8 C -0.021 4.021 9 C -0.161 4.161 10 C 0.098 3.902 11 C -0.201 4.201 12 N -0.361 5.361 13 C -0.345 4.345 14 H 0.090 0.910 15 C -0.266 4.266 16 N -0.619 5.619 17 Si 0.787 3.213 18 H -0.218 1.218 19 H -0.201 1.201 20 H -0.230 1.230 21 C -0.165 4.165 22 C 0.006 3.994 23 C 0.291 3.709 24 O -0.424 6.424 25 N -0.196 5.196 26 H 0.284 0.716 27 C 0.083 3.917 28 C -0.187 4.187 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.152 0.848 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.207 0.793 40 H 0.055 0.945 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.121 0.879 46 H 0.149 0.851 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.905 -27.169 3.679 27.694 hybrid contribution 0.924 0.810 -0.667 1.399 sum -2.981 -26.359 3.012 26.698 Atomic orbital electron populations 1.20735 0.83942 1.05047 1.04627 1.21074 0.99844 0.85347 1.11975 1.67515 1.07281 1.30964 0.99858 1.23053 0.89634 0.92637 1.16579 1.17607 0.84544 0.83151 0.78518 1.90764 1.21470 1.85239 1.47979 1.47942 1.17659 1.08587 1.56991 1.22468 0.81271 1.04882 0.93510 1.22086 1.02251 0.95339 0.96459 1.19841 0.89837 0.89949 0.90572 1.22111 1.01082 1.00400 0.96513 1.42618 1.31552 1.06890 1.55078 1.19400 1.07220 0.87226 1.20643 0.90990 1.25305 0.98639 1.01196 1.01447 1.69786 1.20024 1.35633 1.36419 0.85384 0.77652 0.82095 0.76160 1.21782 1.20081 1.22952 1.22222 0.99174 1.00380 0.94714 1.21365 0.96222 0.83343 0.98495 1.18870 0.87717 0.84927 0.79386 1.91000 1.13603 1.86247 1.51542 1.43661 1.07341 1.11315 1.57268 0.71642 1.22487 0.82433 1.00888 0.85878 1.21607 1.00880 0.88427 1.07749 0.88974 0.91688 0.86813 0.84842 0.92769 0.90349 0.89541 0.93284 0.91655 0.94263 0.79269 0.94515 0.91889 0.91632 0.91433 0.92652 0.87937 0.85127 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 9.65 71.23 0.69 0.06 16 2 C -0.05 -0.78 6.70 42.03 0.28 -0.50 16 3 N -0.34 -8.67 6.66 -169.24 -1.13 -9.80 16 4 C -0.06 -1.93 6.52 43.71 0.29 -1.64 16 5 C 0.57 23.84 7.52 86.68 0.65 24.49 16 6 O -0.58 -28.35 15.39 12.57 0.19 -28.16 16 7 N -0.58 -22.94 2.97 -822.70 -2.45 -25.38 16 8 C 0.10 3.45 5.74 86.36 0.50 3.94 16 9 C -0.12 -3.93 4.96 30.67 0.15 -3.78 16 10 C 0.19 7.20 0.74 3.63 0.00 7.20 16 11 C -0.14 -4.97 8.44 71.98 0.61 -4.36 16 12 N -0.72 -34.53 4.13 -303.23 -1.25 -35.79 16 13 C -0.21 -11.41 8.68 84.04 0.73 -10.68 16 14 H 0.07 3.78 6.70 -2.91 -0.02 3.76 16 15 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 16 N -0.97 -58.56 13.06 21.65 0.28 -58.28 16 17 Si 0.96 46.93 29.55 68.60 2.03 48.96 16 18 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.30 -15.18 7.11 99.48 0.71 -14.48 16 21 C -0.12 -4.84 4.70 30.67 0.14 -4.69 16 22 C 0.13 5.46 6.17 86.36 0.53 5.99 16 23 C 0.50 14.54 7.90 86.39 0.68 15.22 16 24 O -0.55 -21.16 16.75 11.74 0.20 -20.97 16 25 N -0.56 -8.05 5.29 -301.75 -1.60 -9.65 16 26 H 0.44 3.19 8.64 -92.70 -0.80 2.39 16 27 C 0.20 1.71 6.78 41.61 0.28 1.99 16 28 C -0.13 0.53 8.83 71.24 0.63 1.16 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.11 -0.07 6.43 -2.38 -0.02 -0.09 16 32 H 0.13 3.97 4.16 -26.02 -0.11 3.86 16 33 H 0.05 2.14 6.94 -2.38 -0.02 2.12 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 36 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.04 1.48 7.27 -2.39 -0.02 1.47 16 39 H 0.37 19.37 6.46 -92.71 -0.60 18.77 16 40 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 41 H 0.06 2.56 7.31 -2.39 -0.02 2.55 16 42 H 0.07 2.30 8.14 -2.38 -0.02 2.29 16 43 H 0.07 2.96 7.01 -2.39 -0.02 2.94 16 44 H 0.06 2.70 7.74 -2.39 -0.02 2.68 16 45 H 0.10 -0.74 7.90 -2.39 -0.02 -0.76 16 46 H 0.13 -0.96 8.09 -2.39 -0.02 -0.98 16 47 H 0.13 -0.92 7.36 -2.39 -0.02 -0.93 16 Total: -1.00 -87.48 371.29 2.44 -85.04 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -0.47 Total: 23.36 kcal Atomic # 6 Polarization: 24.03 SS G_CDS: 6.63 Total: 30.66 kcal Atomic # 7 Polarization: -132.76 SS G_CDS: -6.14 Total: -138.90 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: 0.39 Total: -49.12 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -87.48 2.44 -85.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327994841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.482 kcal (2) G-P(sol) polarization free energy of solvation -87.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds