Wall clock time and date at job start Tue Mar 31 2020 19:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38221 * 120.41773 * 2 1 4 4 N 1.31862 * 120.76221 * 180.25125 * 3 2 1 5 5 C 1.31881 * 121.72315 * 0.04192 * 4 3 2 6 6 C 1.38185 * 120.76978 * 359.96041 * 5 4 3 7 7 C 1.38635 * 120.41887 * 180.27454 * 2 1 3 8 8 C 1.50701 * 120.78677 * 359.70635 * 7 2 1 9 9 C 1.50692 * 109.47149 * 85.00080 * 8 7 2 10 10 O 1.21287 * 120.00216 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00262 * 179.97438 * 9 8 7 12 12 C 1.46508 * 119.99669 * 359.97438 * 11 9 8 13 13 C 1.46499 * 120.00559 * 179.97438 * 11 9 8 14 14 C 1.53007 * 109.46954 * 89.99899 * 13 11 9 15 15 N 1.46893 * 109.47036 * 180.02562 * 14 13 11 16 16 C 1.46899 * 111.00046 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47533 * 180.02562 * 16 15 14 18 18 O 1.21298 * 119.99670 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00319 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00310 * 180.02562 * 19 17 16 21 21 H 1.08007 * 119.99274 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00380 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99654 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00217 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47186 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47373 * 119.99941 * 24 22 20 27 27 H 1.48498 * 109.47427 * 240.00279 * 24 22 20 28 28 H 1.08999 * 109.47245 * 269.72372 * 1 2 3 29 29 H 1.08991 * 109.46674 * 29.72400 * 1 2 3 30 30 H 1.09007 * 109.46846 * 149.72305 * 1 2 3 31 31 H 1.07993 * 119.62150 * 0.27487 * 3 2 1 32 32 H 1.08011 * 119.61586 * 179.97438 * 5 4 3 33 33 H 1.07998 * 120.41936 * 180.02562 * 6 5 4 34 34 H 1.09005 * 109.46822 * 205.00093 * 8 7 2 35 35 H 1.08995 * 109.47233 * 324.99475 * 8 7 2 36 36 H 1.09005 * 109.46730 * 90.00396 * 12 11 9 37 37 H 1.08997 * 109.47074 * 209.99569 * 12 11 9 38 38 H 1.08998 * 109.47179 * 330.00380 * 12 11 9 39 39 H 1.08997 * 109.47594 * 209.99934 * 13 11 9 40 40 H 1.08998 * 109.47227 * 330.00313 * 13 11 9 41 41 H 1.08997 * 109.46999 * 300.00399 * 14 13 11 42 42 H 1.08998 * 109.46815 * 60.00162 * 14 13 11 43 43 H 1.00901 * 111.00193 * 56.05305 * 15 14 13 44 44 H 1.08997 * 109.47134 * 300.00329 * 16 15 14 45 45 H 1.09002 * 109.47107 * 60.00054 * 16 15 14 46 46 H 0.97001 * 120.00011 * 359.97438 * 19 17 16 47 47 H 0.96997 * 119.99708 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0050 5 6 4.2256 0.0823 -0.0109 6 6 3.5948 -1.1471 -0.0113 7 6 2.2090 -1.1955 -0.0057 8 6 1.4831 -2.5162 -0.0054 9 6 1.1264 -2.8937 -1.4200 10 8 1.4311 -2.1620 -2.3381 11 7 0.4687 -4.0442 -1.6651 12 6 0.1011 -4.9283 -0.5561 13 6 0.1214 -4.4110 -3.0402 14 6 1.2597 -5.2299 -3.6526 15 7 0.9117 -5.5971 -5.0317 16 6 1.9837 -6.3865 -5.6527 17 6 1.5921 -6.7434 -7.0635 18 8 0.5251 -6.3758 -7.5081 19 7 2.4274 -7.4709 -7.8312 20 6 2.0714 -7.7951 -9.1148 21 1 1.1213 -7.4677 -9.5107 22 6 2.9328 -8.5447 -9.9065 23 7 4.0890 -8.9425 -9.4249 24 14 2.4474 -8.9870 -11.6552 25 1 1.1067 -8.4228 -11.9545 26 1 3.4432 -8.4247 -12.6026 27 1 2.4066 -10.4644 -11.7990 28 1 -0.3634 -0.0050 1.0276 29 1 -0.3632 0.8924 -0.5095 30 1 -0.3633 -0.8876 -0.5182 31 1 1.6675 2.1276 0.0045 32 1 5.3047 0.1285 -0.0153 33 1 4.1737 -2.0588 -0.0158 34 1 2.1263 -3.2841 0.4244 35 1 0.5731 -2.4305 0.5883 36 1 -0.8871 -4.6551 -0.1860 37 1 0.0858 -5.9610 -0.9045 38 1 0.8309 -4.8264 0.2470 39 1 -0.7928 -5.0045 -3.0382 40 1 -0.0335 -3.5071 -3.6293 41 1 2.1739 -4.6364 -3.6546 42 1 1.4146 -6.1338 -3.0636 43 1 0.7005 -4.7780 -5.5817 44 1 2.9033 -5.8016 -5.6681 45 1 2.1429 -7.2987 -5.0777 46 1 3.2809 -7.7646 -7.4758 47 1 4.6901 -9.4661 -9.9774 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481230438.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:01 Heat of formation + Delta-G solvation = -35.233634 kcal Electronic energy + Delta-G solvation = -27539.100641 eV Core-core repulsion = 23528.837724 eV Total energy + Delta-G solvation = -4010.262917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.98497 -39.82497 -38.28504 -36.50518 -35.04493 -34.68981 -33.81561 -32.77262 -31.24876 -30.44718 -28.82876 -27.46431 -27.11947 -25.80325 -24.07303 -23.16292 -22.40301 -21.74330 -19.62515 -19.14128 -17.89386 -17.50179 -17.20270 -16.99723 -16.34758 -16.02967 -15.58378 -15.53189 -15.35372 -14.68081 -14.52768 -14.19507 -13.90181 -13.83748 -13.66432 -13.60547 -13.28664 -13.25038 -13.08801 -13.00736 -12.84914 -12.70469 -12.47591 -12.20610 -12.03005 -11.70467 -11.52638 -11.50127 -11.14957 -10.99971 -10.33803 -10.30798 -10.22026 -9.74241 -9.72917 -9.51662 -9.17838 -9.03555 -8.46352 -8.09264 -7.95748 -6.41351 -3.82104 0.84742 0.90714 2.28603 2.62925 3.16882 3.27358 3.34885 3.49594 3.91127 4.05635 4.12167 4.19725 4.24878 4.30816 4.43422 4.57675 4.62244 4.71164 4.88270 4.92140 4.92858 4.97437 5.10132 5.17018 5.19112 5.19247 5.26703 5.27901 5.31349 5.46511 5.47082 5.61801 5.71158 5.75435 5.83407 5.85386 5.97760 5.98947 6.16090 6.27954 6.42058 7.01330 7.16212 7.55980 7.61780 7.70607 7.84833 8.06921 8.61573 9.18326 9.54630 10.05971 10.76523 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.001801 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.030456 B =15544.200172 C =16185.244054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.122 4.122 3 C 0.098 3.902 4 N -0.483 5.483 5 C 0.092 3.908 6 C -0.156 4.156 7 C -0.025 4.025 8 C -0.104 4.104 9 C 0.514 3.486 10 O -0.524 6.524 11 N -0.615 5.615 12 C 0.074 3.926 13 C 0.117 3.883 14 C 0.046 3.954 15 N -0.667 5.667 16 C 0.053 3.947 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.133 0.867 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.030 0.970 42 H 0.070 0.930 43 H 0.351 0.649 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.836 12.401 27.037 29.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.123 4.123 3 C -0.059 4.059 4 N -0.192 5.192 5 C -0.064 4.064 6 C -0.176 4.176 7 C -0.033 4.033 8 C -0.144 4.144 9 C 0.301 3.699 10 O -0.399 6.399 11 N -0.350 5.350 12 C -0.069 4.069 13 C -0.006 4.006 14 C -0.084 4.084 15 N -0.300 5.300 16 C -0.080 4.080 17 C 0.227 3.773 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.122 0.878 22 C -0.181 4.181 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.171 0.829 32 H 0.173 0.827 33 H 0.151 0.849 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.048 0.952 42 H 0.089 0.911 43 H 0.171 0.829 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.168 13.175 26.323 29.730 hybrid contribution 0.758 -0.859 -0.774 1.383 sum -3.410 12.315 25.549 28.567 Atomic orbital electron populations 1.20745 0.90351 1.03531 1.02250 1.20733 0.97468 0.93596 1.00549 1.22628 0.89943 0.97287 0.96036 1.67648 1.08340 1.31490 1.11679 1.22694 1.00357 0.87551 0.95808 1.21997 0.94303 0.99895 1.01410 1.19549 0.93548 0.93689 0.96553 1.20742 1.02370 0.95612 0.95663 1.20404 0.77827 0.80865 0.90823 1.90776 1.52334 1.50682 1.46154 1.47842 1.57838 1.21206 1.08078 1.21889 1.00647 0.95080 0.89294 1.21438 0.97957 1.00242 0.80938 1.22247 0.96609 0.98640 0.90945 1.60017 1.41459 1.26832 1.01663 1.21654 0.92467 0.98511 0.95389 1.19790 0.86351 0.84264 0.86937 1.90524 1.24078 1.57816 1.74279 1.41866 1.18452 1.46900 1.12840 1.19762 1.04421 1.30589 0.88019 0.87835 1.25275 0.95296 0.97062 1.00425 1.69623 1.09192 1.37688 1.37836 0.85787 0.78774 0.78092 0.81613 1.19200 1.20772 1.20745 0.90799 0.90856 0.91513 0.82858 0.82729 0.84889 0.87504 0.87417 0.92189 0.90297 0.91021 0.89198 0.89714 0.95205 0.91143 0.82950 0.93840 0.89624 0.77461 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.30 36.01 0.33 -0.40 16 2 C -0.12 -1.09 5.90 -104.48 -0.62 -1.71 16 3 C 0.10 0.95 10.86 -17.54 -0.19 0.76 16 4 N -0.48 -5.38 10.36 -13.25 -0.14 -5.52 16 5 C 0.09 0.88 11.18 -17.55 -0.20 0.69 16 6 C -0.16 -1.38 9.80 -39.44 -0.39 -1.77 16 7 C -0.02 -0.22 4.41 -104.32 -0.46 -0.68 16 8 C -0.10 -0.69 3.74 -29.04 -0.11 -0.80 16 9 C 0.51 5.24 6.98 -10.99 -0.08 5.16 16 10 O -0.52 -7.79 15.61 5.55 0.09 -7.71 16 11 N -0.62 -5.37 2.87 -181.57 -0.52 -5.89 16 12 C 0.07 0.35 10.24 59.85 0.61 0.96 16 13 C 0.12 1.28 5.67 -4.04 -0.02 1.26 16 14 C 0.05 0.60 6.01 -3.82 -0.02 0.57 16 15 N -0.67 -11.08 6.13 -115.06 -0.70 -11.78 16 16 C 0.05 0.96 6.17 -4.97 -0.03 0.93 16 17 C 0.44 10.65 7.82 -10.98 -0.09 10.57 16 18 O -0.58 -16.12 15.78 5.54 0.09 -16.03 16 19 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 20 C -0.30 -8.44 9.68 -14.94 -0.14 -8.59 16 21 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 24 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 30 H 0.07 0.49 6.35 -51.93 -0.33 0.16 16 31 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.11 0.47 7.33 -51.93 -0.38 0.09 16 35 H 0.11 0.47 7.08 -51.93 -0.37 0.10 16 36 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.08 0.36 8.07 -51.93 -0.42 -0.05 16 38 H 0.07 0.20 6.44 -51.93 -0.33 -0.14 16 39 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 40 H 0.08 1.09 7.42 -51.93 -0.39 0.70 16 41 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.35 6.17 8.43 -39.29 -0.33 5.84 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 396.90 15.07 5.98 5.98 Total: -1.00 -36.31 396.90 -8.08 -44.39 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -7.03 Total: 11.57 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -1.49 Total: 7.43 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.70 Total: -61.87 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.17 Total: -23.73 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.31 -8.08 -44.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481230438.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.158 kcal (2) G-P(sol) polarization free energy of solvation -36.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds