Wall clock time and date at job start Tue Mar 31 2020 19:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32091 * 119.85269 * 2 1 4 4 C 1.32605 * 120.00622 * 179.73171 * 3 2 1 5 5 O 1.35436 * 120.14634 * 180.27586 * 4 3 2 6 6 C 1.40218 * 119.71084 * 0.54487 * 4 3 2 7 7 C 1.47831 * 120.14996 * 179.73385 * 6 4 3 8 8 O 1.21555 * 120.00076 * 359.71771 * 7 6 4 9 9 N 1.34777 * 120.00153 * 179.72540 * 7 6 4 10 10 C 1.46497 * 120.00491 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47497 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47385 * 179.97438 * 11 10 9 13 13 H 1.08996 * 110.78144 * 308.24779 * 12 11 10 14 14 C 1.55157 * 110.72400 * 184.99984 * 12 11 10 15 15 C 1.54905 * 101.61697 * 206.15900 * 14 12 11 16 16 N 1.47422 * 104.83376 * 36.99215 * 15 14 12 17 17 C 1.36939 * 125.64755 * 155.91226 * 16 15 14 18 18 H 1.08004 * 119.99658 * 341.70576 * 17 16 15 19 19 C 1.38812 * 120.00133 * 161.71674 * 17 16 15 20 20 N 1.31615 * 120.00148 * 156.12307 * 19 17 16 21 21 Si 1.86794 * 119.99798 * 336.12088 * 19 17 16 22 22 H 1.48504 * 109.47558 * 84.65224 * 21 19 17 23 23 H 1.48500 * 109.47341 * 204.65539 * 21 19 17 24 24 H 1.48504 * 109.47264 * 324.65425 * 21 19 17 25 25 C 1.47016 * 108.70355 * 335.86718 * 16 15 14 26 26 N 1.32999 * 119.69784 * 359.45544 * 6 4 3 27 27 C 1.31753 * 119.99196 * 0.27648 * 26 6 4 28 28 C 1.50702 * 119.85198 * 179.97438 * 27 26 6 29 29 H 1.08996 * 109.47013 * 269.97490 * 1 2 3 30 30 H 1.09002 * 109.46987 * 29.97766 * 1 2 3 31 31 H 1.09007 * 109.47131 * 149.97668 * 1 2 3 32 32 H 0.96703 * 113.99708 * 270.26388 * 5 4 3 33 33 H 0.97003 * 119.99722 * 359.97438 * 9 7 6 34 34 H 1.09004 * 109.47066 * 59.99860 * 10 9 7 35 35 H 1.09001 * 109.46770 * 300.00369 * 10 9 7 36 36 H 1.09004 * 109.46796 * 60.00039 * 11 10 9 37 37 H 1.09001 * 109.47692 * 300.00148 * 11 10 9 38 38 H 1.08999 * 110.99902 * 88.06306 * 14 12 11 39 39 H 1.09003 * 110.99978 * 324.25239 * 14 12 11 40 40 H 1.09003 * 110.36709 * 155.83142 * 15 14 12 41 41 H 1.09002 * 110.36463 * 278.04167 * 15 14 12 42 42 H 0.97003 * 120.00121 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.88051 * 120.47506 * 25 16 15 44 44 H 1.08992 * 109.88616 * 241.64367 * 25 16 15 45 45 H 1.08997 * 109.47359 * 90.00253 * 28 27 26 46 46 H 1.09008 * 109.47330 * 210.00446 * 28 27 26 47 47 H 1.09000 * 109.46926 * 330.00179 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1645 1.1456 0.0000 4 6 3.4905 1.1492 0.0054 5 8 4.1675 2.3222 0.0110 6 6 4.1888 -0.0668 -0.0005 7 6 5.6671 -0.0741 -0.0006 8 8 6.2801 0.9756 -0.0006 9 7 6.3352 -1.2446 -0.0007 10 6 7.8002 -1.2519 -0.0012 11 6 8.3030 -2.6969 -0.0006 12 6 9.8330 -2.7045 -0.0019 13 1 10.2222 -2.0762 -0.8029 14 6 10.3747 -4.1530 -0.1277 15 6 11.7601 -4.0282 0.5540 16 7 11.5472 -3.0922 1.6729 17 6 12.3082 -3.0204 2.8091 18 1 12.9439 -3.8482 3.0864 19 6 12.2622 -1.8837 3.6046 20 7 12.5831 -1.9587 4.8788 21 14 11.7449 -0.2476 2.8665 22 1 10.2632 -0.1478 2.8730 23 1 12.3193 0.8616 3.6697 24 1 12.2410 -0.1557 1.4698 25 6 10.3834 -2.2478 1.3662 26 7 3.5151 -1.2135 -0.0005 27 6 2.1976 -1.2033 -0.0004 28 6 1.4373 -2.5045 -0.0010 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 4.3642 2.6670 -0.8708 33 1 5.8460 -2.0822 -0.0003 34 1 8.1664 -0.7398 0.8885 35 1 8.1656 -0.7400 -0.8914 36 1 7.9367 -3.2094 -0.8902 37 1 7.9375 -3.2085 0.8898 38 1 10.4785 -4.4417 -1.1736 39 1 9.7374 -4.8563 0.4083 40 1 12.0876 -4.9983 0.9280 41 1 12.4923 -3.6254 -0.1458 42 1 12.5513 -1.1644 5.4346 43 1 9.6200 -2.3760 2.1336 44 1 10.6874 -1.2025 1.3137 45 1 1.2540 -2.8187 1.0265 46 1 0.4855 -2.3691 -0.5148 47 1 2.0225 -3.2669 -0.5152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481436949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:52 Heat of formation + Delta-G solvation = -2.525806 kcal Electronic energy + Delta-G solvation = -28424.157621 eV Core-core repulsion = 24415.313022 eV Total energy + Delta-G solvation = -4008.844599 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.95458 -39.58884 -38.22582 -37.92309 -35.31911 -35.12140 -33.76874 -32.92504 -31.41356 -29.68657 -29.16419 -28.10500 -27.01475 -24.75208 -24.08838 -23.48062 -22.35412 -21.04870 -20.21950 -19.87513 -19.16731 -18.69448 -17.81799 -16.94233 -16.57773 -16.11498 -15.82067 -15.36491 -15.24522 -14.76375 -14.48457 -14.19385 -13.91892 -13.68276 -13.60488 -13.51213 -13.45307 -12.98930 -12.79468 -12.64699 -12.42182 -12.36103 -12.15250 -12.10654 -12.02693 -11.54890 -11.39392 -11.30991 -11.06013 -10.80365 -10.58165 -10.48251 -10.30805 -10.12055 -9.77293 -9.51900 -9.37891 -9.25863 -9.09018 -8.55628 -7.00324 -5.90683 -3.18752 -0.13661 0.45685 2.37917 2.68233 2.99890 3.27628 3.41764 3.42811 3.55088 3.57591 3.70914 4.07988 4.33863 4.55579 4.60740 4.62256 4.81299 4.82692 4.95673 4.97380 5.00326 5.07686 5.18639 5.23986 5.33199 5.37356 5.41764 5.46587 5.53523 5.72023 5.77423 5.82494 5.95129 6.07428 6.14724 6.18647 6.32670 6.36833 6.52474 6.56076 6.65778 6.83524 6.84322 7.02984 7.14632 7.37492 7.77737 7.99062 8.35751 8.88992 9.74599 10.24198 11.25798 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016185 B = 0.002534 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.624020 B =11045.431016 C =11844.769851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.130 3.870 3 N -0.462 5.462 4 C 0.323 3.677 5 O -0.450 6.450 6 C 0.014 3.986 7 C 0.570 3.430 8 O -0.512 6.512 9 N -0.707 5.707 10 C 0.113 3.887 11 C -0.117 4.117 12 C -0.099 4.099 13 H 0.077 0.923 14 C -0.124 4.124 15 C 0.131 3.869 16 N -0.611 5.611 17 C -0.243 4.243 18 H 0.092 0.908 19 C 0.021 3.979 20 N -0.907 5.907 21 Si 0.886 3.114 22 H -0.285 1.285 23 H -0.304 1.304 24 H -0.280 1.280 25 C 0.124 3.876 26 N -0.395 5.395 27 C 0.066 3.934 28 C -0.102 4.102 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.408 0.592 33 H 0.409 0.591 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.023 0.977 42 H 0.263 0.737 43 H 0.040 0.960 44 H 0.024 0.976 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.327 -0.924 -15.963 31.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.013 4.013 3 N -0.187 5.187 4 C 0.142 3.858 5 O -0.256 6.256 6 C -0.129 4.129 7 C 0.353 3.647 8 O -0.386 6.386 9 N -0.359 5.359 10 C -0.010 4.010 11 C -0.155 4.155 12 C -0.118 4.118 13 H 0.095 0.905 14 C -0.163 4.163 15 C 0.006 3.994 16 N -0.338 5.338 17 C -0.370 4.370 18 H 0.109 0.891 19 C -0.177 4.177 20 N -0.551 5.551 21 Si 0.718 3.282 22 H -0.212 1.212 23 H -0.232 1.232 24 H -0.206 1.206 25 C -0.001 4.001 26 N -0.114 5.114 27 C -0.078 4.078 28 C -0.160 4.160 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.269 0.731 33 H 0.244 0.756 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.041 0.959 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.042 0.958 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -26.639 -0.033 -15.127 30.635 hybrid contribution -0.311 0.958 -0.671 1.210 sum -26.950 0.926 -15.798 31.253 Atomic orbital electron populations 1.20924 0.86992 1.04586 1.04227 1.22283 0.98537 0.87604 0.92912 1.67982 1.08259 1.30242 1.12257 1.19978 0.86808 0.86602 0.92451 1.84778 1.72631 1.34266 1.33949 1.22451 0.96151 0.89649 1.04648 1.17448 0.84657 0.84631 0.77974 1.90865 1.67714 1.31216 1.48835 1.45855 1.07931 1.08464 1.73605 1.21602 0.77815 0.98363 1.03176 1.21776 0.95990 0.94878 1.02825 1.22120 0.93103 0.97837 0.98763 0.90487 1.22778 0.98131 0.95539 0.99828 1.21612 0.93893 0.94274 0.89639 1.44797 1.30291 1.40225 1.18451 1.18652 1.21479 1.00851 0.95990 0.89050 1.24955 0.99573 0.97746 0.95450 1.69859 1.52238 1.29113 1.03922 0.86930 0.77815 0.85107 0.78382 1.21227 1.23244 1.20645 1.21746 0.90385 0.94391 0.93602 1.68165 1.08540 1.27928 1.06721 1.22155 0.89954 0.97128 0.98589 1.20805 0.99264 0.91901 1.04030 0.89113 0.89660 0.89191 0.73142 0.75559 0.90603 0.91033 0.91168 0.90679 0.91613 0.91234 0.93408 0.95914 0.92748 0.94199 0.95830 0.89474 0.89618 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 9.78 36.01 0.35 -0.08 16 2 C 0.13 1.06 6.79 -82.30 -0.56 0.50 16 3 N -0.46 -5.11 10.44 -9.01 -0.09 -5.21 16 4 C 0.32 4.00 7.78 -16.47 -0.13 3.88 16 5 O -0.45 -5.56 11.64 -39.85 -0.46 -6.02 16 6 C 0.01 0.18 6.77 -82.69 -0.56 -0.38 16 7 C 0.57 8.24 7.80 -12.34 -0.10 8.15 16 8 O -0.51 -8.91 15.17 -16.54 -0.25 -9.17 16 9 N -0.71 -9.04 5.55 -61.26 -0.34 -9.38 16 10 C 0.11 1.60 5.56 -4.05 -0.02 1.58 16 11 C -0.12 -1.50 4.73 -26.73 -0.13 -1.63 16 12 C -0.10 -1.60 2.93 -88.76 -0.26 -1.86 16 13 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 14 C -0.12 -1.90 6.53 -24.58 -0.16 -2.06 16 15 C 0.13 2.59 7.23 -2.53 -0.02 2.57 16 16 N -0.61 -15.16 3.20 -170.05 -0.54 -15.70 16 17 C -0.24 -7.09 10.56 -15.06 -0.16 -7.25 16 18 H 0.09 2.80 8.06 -52.48 -0.42 2.37 16 19 C 0.02 0.65 5.43 -17.43 -0.09 0.55 16 20 N -0.91 -28.83 13.97 55.49 0.78 -28.05 16 21 Si 0.89 23.95 24.40 -169.99 -4.15 19.80 16 22 H -0.28 -7.52 6.83 56.52 0.39 -7.13 16 23 H -0.30 -8.31 7.11 56.52 0.40 -7.91 16 24 H -0.28 -7.46 6.90 56.52 0.39 -7.07 16 25 C 0.12 2.74 4.18 -3.04 -0.01 2.72 16 26 N -0.39 -4.17 9.62 -5.80 -0.06 -4.23 16 27 C 0.07 0.53 6.78 -82.44 -0.56 -0.03 16 28 C -0.10 -0.42 9.77 36.01 0.35 -0.06 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.13 5.93 -51.92 -0.31 -0.18 16 32 H 0.41 3.17 9.06 45.56 0.41 3.59 16 33 H 0.41 4.35 7.82 -40.82 -0.32 4.03 16 34 H 0.08 1.30 7.69 -51.93 -0.40 0.90 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.03 8.05 -51.93 -0.42 0.61 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 43 H 0.04 0.93 7.68 -51.93 -0.40 0.53 16 44 H 0.02 0.58 3.53 -51.93 -0.18 0.40 16 45 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.09 0.13 5.93 -51.92 -0.31 -0.18 16 47 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 378.88 15.07 5.71 5.71 Total: -1.00 -37.76 378.88 -7.61 -45.37 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.15 Total: 0.28 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -2.05 Total: 6.60 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -0.26 Total: -62.57 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.71 Total: -15.19 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -4.15 Total: 19.80 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.76 -7.61 -45.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481436949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.847 kcal (2) G-P(sol) polarization free energy of solvation -37.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds