Wall clock time and date at job start Tue Mar 31 2020 19:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32091 * 119.85269 * 2 1 4 4 C 1.32605 * 120.00622 * 179.73171 * 3 2 1 5 5 O 1.35436 * 120.14634 * 180.27586 * 4 3 2 6 6 C 1.40218 * 119.71084 * 0.54487 * 4 3 2 7 7 C 1.47831 * 120.14996 * 179.73385 * 6 4 3 8 8 O 1.21555 * 120.00076 * 359.71771 * 7 6 4 9 9 N 1.34777 * 120.00153 * 179.72540 * 7 6 4 10 10 C 1.46497 * 120.00491 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47497 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47385 * 179.97438 * 11 10 9 13 13 H 1.08996 * 110.78144 * 308.24779 * 12 11 10 14 14 C 1.55157 * 110.72400 * 184.99984 * 12 11 10 15 15 C 1.54905 * 101.61697 * 206.15900 * 14 12 11 16 16 N 1.47422 * 104.83376 * 36.99215 * 15 14 12 17 17 C 1.36939 * 125.64755 * 155.91226 * 16 15 14 18 18 H 1.08004 * 119.99658 * 341.70576 * 17 16 15 19 19 C 1.38812 * 120.00133 * 161.71674 * 17 16 15 20 20 N 1.31615 * 120.00148 * 156.12307 * 19 17 16 21 21 Si 1.86794 * 119.99798 * 336.12088 * 19 17 16 22 22 H 1.48504 * 109.47558 * 84.65224 * 21 19 17 23 23 H 1.48500 * 109.47341 * 204.65539 * 21 19 17 24 24 H 1.48504 * 109.47264 * 324.65425 * 21 19 17 25 25 C 1.47016 * 108.70355 * 335.86718 * 16 15 14 26 26 N 1.32999 * 119.69784 * 359.45544 * 6 4 3 27 27 C 1.31753 * 119.99196 * 0.27648 * 26 6 4 28 28 C 1.50702 * 119.85198 * 179.97438 * 27 26 6 29 29 H 1.08996 * 109.47013 * 269.97490 * 1 2 3 30 30 H 1.09002 * 109.46987 * 29.97766 * 1 2 3 31 31 H 1.09007 * 109.47131 * 149.97668 * 1 2 3 32 32 H 0.96703 * 113.99708 * 270.26388 * 5 4 3 33 33 H 0.97003 * 119.99722 * 359.97438 * 9 7 6 34 34 H 1.09004 * 109.47066 * 59.99860 * 10 9 7 35 35 H 1.09001 * 109.46770 * 300.00369 * 10 9 7 36 36 H 1.09004 * 109.46796 * 60.00039 * 11 10 9 37 37 H 1.09001 * 109.47692 * 300.00148 * 11 10 9 38 38 H 1.08999 * 110.99902 * 88.06306 * 14 12 11 39 39 H 1.09003 * 110.99978 * 324.25239 * 14 12 11 40 40 H 1.09003 * 110.36709 * 155.83142 * 15 14 12 41 41 H 1.09002 * 110.36463 * 278.04167 * 15 14 12 42 42 H 0.97003 * 120.00121 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.88051 * 120.47506 * 25 16 15 44 44 H 1.08992 * 109.88616 * 241.64367 * 25 16 15 45 45 H 1.08997 * 109.47359 * 90.00253 * 28 27 26 46 46 H 1.09008 * 109.47330 * 210.00446 * 28 27 26 47 47 H 1.09000 * 109.46926 * 330.00179 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1645 1.1456 0.0000 4 6 3.4905 1.1492 0.0054 5 8 4.1675 2.3222 0.0110 6 6 4.1888 -0.0668 -0.0005 7 6 5.6671 -0.0741 -0.0006 8 8 6.2801 0.9756 -0.0006 9 7 6.3352 -1.2446 -0.0007 10 6 7.8002 -1.2519 -0.0012 11 6 8.3030 -2.6969 -0.0006 12 6 9.8330 -2.7045 -0.0019 13 1 10.2222 -2.0762 -0.8029 14 6 10.3747 -4.1530 -0.1277 15 6 11.7601 -4.0282 0.5540 16 7 11.5472 -3.0922 1.6729 17 6 12.3082 -3.0204 2.8091 18 1 12.9439 -3.8482 3.0864 19 6 12.2622 -1.8837 3.6046 20 7 12.5831 -1.9587 4.8788 21 14 11.7449 -0.2476 2.8665 22 1 10.2632 -0.1478 2.8730 23 1 12.3193 0.8616 3.6697 24 1 12.2410 -0.1557 1.4698 25 6 10.3834 -2.2478 1.3662 26 7 3.5151 -1.2135 -0.0005 27 6 2.1976 -1.2033 -0.0004 28 6 1.4373 -2.5045 -0.0010 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 4.3642 2.6670 -0.8708 33 1 5.8460 -2.0822 -0.0003 34 1 8.1664 -0.7398 0.8885 35 1 8.1656 -0.7400 -0.8914 36 1 7.9367 -3.2094 -0.8902 37 1 7.9375 -3.2085 0.8898 38 1 10.4785 -4.4417 -1.1736 39 1 9.7374 -4.8563 0.4083 40 1 12.0876 -4.9983 0.9280 41 1 12.4923 -3.6254 -0.1458 42 1 12.5513 -1.1644 5.4346 43 1 9.6200 -2.3760 2.1336 44 1 10.6874 -1.2025 1.3137 45 1 1.2540 -2.8187 1.0265 46 1 0.4855 -2.3691 -0.5148 47 1 2.0225 -3.2669 -0.5152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481436949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:51 Heat of formation + Delta-G solvation = -34.617522 kcal Electronic energy + Delta-G solvation = -28425.549223 eV Core-core repulsion = 24415.313022 eV Total energy + Delta-G solvation = -4010.236200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.71394 -40.65525 -39.67268 -38.82577 -36.56312 -35.89072 -34.80371 -34.35844 -33.08375 -30.99921 -30.03492 -28.94158 -28.27940 -26.44537 -24.89791 -24.41085 -23.53937 -22.10639 -21.89773 -21.15553 -19.99515 -19.48664 -19.02707 -18.75348 -17.79520 -17.37899 -16.97089 -16.58935 -16.15885 -15.90046 -15.60868 -15.42766 -15.15045 -14.90117 -14.79848 -14.25992 -14.20604 -14.07838 -13.97387 -13.88355 -13.61919 -13.31931 -13.19142 -13.01775 -12.94270 -12.91295 -12.75693 -12.54026 -12.42311 -12.20352 -12.02445 -11.88399 -11.80194 -11.47391 -11.45647 -11.18019 -10.78361 -10.34878 -10.28864 -9.96808 -9.08767 -8.24925 -5.47011 -0.91570 -0.27012 1.23853 1.30041 1.38939 1.45839 1.76248 2.19274 2.34261 2.44507 2.69835 2.97986 3.04980 3.34463 3.42036 3.61522 3.71856 3.81199 3.89423 3.97436 3.99271 4.16881 4.22499 4.48255 4.53857 4.56644 4.58696 4.69137 4.71955 4.78071 4.83829 4.85397 4.95438 4.97746 5.02230 5.10013 5.11871 5.18514 5.25033 5.28201 5.43472 5.50652 5.67197 5.85553 6.05451 6.21340 6.41134 6.48775 6.74508 6.96928 7.51730 8.09291 8.95533 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016185 B = 0.002534 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.624020 B =11045.431016 C =11844.769851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.136 3.864 3 N -0.483 5.483 4 C 0.307 3.693 5 O -0.470 6.470 6 C -0.011 4.011 7 C 0.566 3.434 8 O -0.553 6.553 9 N -0.695 5.695 10 C 0.116 3.884 11 C -0.103 4.103 12 C -0.088 4.088 13 H 0.090 0.910 14 C -0.106 4.106 15 C 0.118 3.882 16 N -0.631 5.631 17 C -0.230 4.230 18 H 0.065 0.935 19 C -0.035 4.035 20 N -0.952 5.952 21 Si 0.945 3.055 22 H -0.283 1.283 23 H -0.310 1.310 24 H -0.274 1.274 25 C 0.115 3.885 26 N -0.402 5.402 27 C 0.069 3.931 28 C -0.101 4.101 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.420 0.580 33 H 0.421 0.579 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.030 0.970 42 H 0.262 0.738 43 H 0.021 0.979 44 H 0.002 0.998 45 H 0.100 0.900 46 H 0.118 0.882 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.867 -2.803 -18.840 36.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.008 4.008 3 N -0.208 5.208 4 C 0.127 3.873 5 O -0.279 6.279 6 C -0.151 4.151 7 C 0.351 3.649 8 O -0.430 6.430 9 N -0.347 5.347 10 C -0.007 4.007 11 C -0.141 4.141 12 C -0.108 4.108 13 H 0.109 0.891 14 C -0.143 4.143 15 C -0.006 4.006 16 N -0.358 5.358 17 C -0.359 4.359 18 H 0.083 0.917 19 C -0.230 4.230 20 N -0.600 5.600 21 Si 0.776 3.224 22 H -0.211 1.211 23 H -0.239 1.239 24 H -0.200 1.200 25 C -0.009 4.009 26 N -0.121 5.121 27 C -0.077 4.077 28 C -0.158 4.158 29 H 0.124 0.876 30 H 0.104 0.896 31 H 0.142 0.858 32 H 0.283 0.717 33 H 0.258 0.742 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.132 0.868 37 H 0.091 0.909 38 H 0.129 0.871 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.071 0.929 43 H 0.039 0.961 44 H 0.020 0.980 45 H 0.118 0.882 46 H 0.136 0.864 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -30.172 -1.941 -18.065 35.221 hybrid contribution 0.663 1.400 0.212 1.563 sum -29.509 -0.541 -17.853 34.494 Atomic orbital electron populations 1.21153 0.83609 1.06307 1.05548 1.23129 1.00571 0.86885 0.90251 1.68065 1.07602 1.31824 1.13321 1.20089 0.87485 0.86429 0.93341 1.84718 1.73035 1.34710 1.35404 1.22082 0.95069 0.90519 1.07473 1.17800 0.85681 0.84342 0.77097 1.90828 1.68833 1.32553 1.50817 1.45716 1.07406 1.08685 1.72914 1.21478 0.78568 0.99125 1.01548 1.21689 0.93486 0.94057 1.04828 1.22111 0.95088 0.98532 0.95056 0.89129 1.22743 0.94744 0.94841 1.02012 1.21928 0.97271 0.92891 0.88479 1.45009 1.30616 1.41481 1.18716 1.18677 1.20362 0.99611 0.97265 0.91697 1.25505 1.01178 1.00542 0.95743 1.69961 1.55212 1.29667 1.05118 0.85969 0.77424 0.81404 0.77559 1.21056 1.23902 1.20034 1.21872 0.89116 0.92994 0.96935 1.68168 1.09847 1.26916 1.07186 1.22942 0.89255 0.98968 0.96485 1.21017 1.00048 0.89490 1.05282 0.87646 0.89636 0.85783 0.71700 0.74150 0.94496 0.90593 0.86831 0.90863 0.87129 0.90300 0.93491 0.95178 0.92935 0.96052 0.98028 0.88211 0.86391 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.45 9.78 71.24 0.70 0.25 16 2 C 0.14 1.90 6.79 42.64 0.29 2.19 16 3 N -0.48 -10.36 10.44 -295.25 -3.08 -13.44 16 4 C 0.31 7.76 7.78 85.06 0.66 8.43 16 5 O -0.47 -12.32 11.64 -66.43 -0.77 -13.10 16 6 C -0.01 -0.28 6.77 41.99 0.28 0.01 16 7 C 0.57 16.70 7.80 86.78 0.68 17.37 16 8 O -0.55 -20.13 15.17 17.01 0.26 -19.87 16 9 N -0.70 -17.25 5.55 -466.00 -2.58 -19.84 16 10 C 0.12 3.17 5.56 86.38 0.48 3.65 16 11 C -0.10 -2.32 4.73 30.59 0.14 -2.18 16 12 C -0.09 -2.59 2.93 -9.59 -0.03 -2.62 16 13 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 14 C -0.11 -2.77 6.53 31.98 0.21 -2.56 16 15 C 0.12 4.43 7.23 86.85 0.63 5.06 16 16 N -0.63 -31.24 3.20 -691.91 -2.22 -33.46 16 17 C -0.23 -13.79 10.56 84.03 0.89 -12.91 16 18 H 0.07 4.14 8.06 -2.91 -0.02 4.11 16 19 C -0.03 -2.18 5.43 84.86 0.46 -1.72 16 20 N -0.95 -62.79 13.97 21.65 0.30 -62.48 16 21 Si 0.94 51.52 24.40 68.60 1.67 53.19 16 22 H -0.28 -15.15 6.83 99.48 0.68 -14.47 16 23 H -0.31 -17.00 7.11 99.48 0.71 -16.29 16 24 H -0.27 -14.44 6.90 99.48 0.69 -13.76 16 25 C 0.12 5.06 4.18 86.75 0.36 5.42 16 26 N -0.40 -7.93 9.62 -172.25 -1.66 -9.58 16 27 C 0.07 0.94 6.78 42.69 0.29 1.22 16 28 C -0.10 -0.38 9.77 71.24 0.70 0.31 16 29 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.12 -0.33 5.93 -2.38 -0.01 -0.35 16 32 H 0.42 7.30 9.06 -74.06 -0.67 6.63 16 33 H 0.42 8.20 7.82 -92.71 -0.73 7.48 16 34 H 0.04 1.30 7.69 -2.38 -0.02 1.28 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.07 1.73 7.94 -2.39 -0.02 1.71 16 38 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.08 1.97 8.05 -2.39 -0.02 1.95 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.26 16.46 8.31 -92.71 -0.77 15.69 16 43 H 0.02 1.01 7.68 -2.39 -0.02 0.99 16 44 H 0.00 0.11 3.53 -2.39 -0.01 0.10 16 45 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.12 -0.31 5.93 -2.38 -0.01 -0.32 16 47 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -88.02 378.88 -1.76 -89.79 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -0.42 Total: 6.86 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 6.74 Total: 21.94 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -9.24 Total: -138.81 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.52 Total: -32.96 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 1.67 Total: 53.19 kcal Total: -88.02 -1.76 -89.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481436949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.169 kcal (2) G-P(sol) polarization free energy of solvation -88.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds