Wall clock time and date at job start Tue Mar 31 2020 17:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35318 * 126.12537 * 2 1 4 4 C 1.39865 * 107.92223 * 180.02562 * 3 2 1 5 5 N 1.30840 * 108.19894 * 359.73725 * 4 3 2 6 6 N 1.34940 * 126.12892 * 180.02562 * 2 1 3 7 7 C 1.46505 * 126.03600 * 359.96001 * 6 2 1 8 8 C 1.50689 * 109.47191 * 90.00174 * 7 6 2 9 9 O 1.21287 * 120.00198 * 359.97438 * 8 7 6 10 10 N 1.34782 * 120.00096 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00073 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46978 * 180.02562 * 11 10 8 13 13 H 1.09001 * 110.26633 * 304.38107 * 12 11 10 14 14 C 1.55013 * 110.38167 * 182.25519 * 12 11 10 15 15 C 1.55482 * 101.04633 * 204.99825 * 14 12 11 16 16 C 1.53666 * 101.96795 * 33.48818 * 15 14 12 17 17 C 1.52694 * 115.26892 * 206.90015 * 16 15 14 18 18 N 1.47212 * 87.79750 * 219.25119 * 17 16 15 19 19 C 1.36929 * 135.97518 * 206.45765 * 18 17 16 20 20 H 1.08004 * 119.99690 * 7.81059 * 19 18 17 21 21 C 1.38806 * 120.00254 * 187.80786 * 19 18 17 22 22 N 1.31623 * 120.00448 * 195.31964 * 21 19 18 23 23 Si 1.86798 * 120.00073 * 15.31965 * 21 19 18 24 24 H 1.48504 * 109.47294 * 270.00540 * 23 21 19 25 25 H 1.48492 * 109.47337 * 150.00011 * 23 21 19 26 26 H 1.48506 * 109.47040 * 29.99991 * 23 21 19 27 27 C 1.47216 * 88.05142 * 26.71314 * 18 17 16 28 28 O 1.42393 * 108.52854 * 339.13460 * 16 15 14 29 29 H 1.08999 * 109.47480 * 269.98236 * 1 2 3 30 30 H 1.09007 * 109.47461 * 29.98251 * 1 2 3 31 31 H 1.09001 * 109.47293 * 149.97722 * 1 2 3 32 32 H 1.08007 * 126.04067 * 0.02562 * 3 2 1 33 33 H 1.07999 * 125.90253 * 179.97438 * 4 3 2 34 34 H 1.08994 * 109.46976 * 329.99679 * 7 6 2 35 35 H 1.09005 * 109.46698 * 210.00009 * 7 6 2 36 36 H 0.97004 * 119.99924 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.47246 * 59.99657 * 11 10 8 38 38 H 1.09001 * 109.46500 * 299.99841 * 11 10 8 39 39 H 1.08996 * 111.10774 * 322.95020 * 14 12 11 40 40 H 1.09004 * 111.10206 * 87.01484 * 14 12 11 41 41 H 1.08993 * 110.93454 * 275.32536 * 15 14 12 42 42 H 1.09004 * 110.93292 * 151.65443 * 15 14 12 43 43 H 1.09002 * 113.49387 * 104.51958 * 17 16 15 44 44 H 1.09000 * 113.56007 * 333.99672 * 17 16 15 45 45 H 0.97000 * 119.99832 * 354.91549 * 22 21 19 46 46 H 1.08997 * 113.49599 * 88.02095 * 27 18 17 47 47 H 1.09000 * 113.49758 * 218.55452 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6334 0.6561 -0.0006 5 7 3.6333 -0.6523 0.0048 6 7 2.3026 -1.0899 -0.0005 7 6 1.8539 -2.4845 -0.0003 8 6 1.6993 -2.9627 -1.4209 9 8 1.9397 -2.2123 -2.3429 10 7 1.2938 -4.2243 -1.6670 11 6 1.1440 -4.6893 -3.0482 12 6 0.6753 -6.1457 -3.0479 13 1 1.3630 -6.7636 -2.4705 14 6 0.5641 -6.6774 -4.4998 15 6 -0.4858 -7.8104 -4.3226 16 6 -1.3845 -7.2414 -3.2136 17 6 -2.1002 -8.2827 -2.3563 18 7 -3.2789 -7.4008 -2.3699 19 6 -4.3530 -7.1802 -1.5498 20 1 -4.3952 -7.6485 -0.5775 21 6 -5.3876 -6.3547 -1.9681 22 7 -6.2601 -5.8989 -1.0944 23 14 -5.5417 -5.8907 -3.7709 24 1 -4.7754 -4.6450 -4.0287 25 1 -6.9717 -5.6704 -4.1049 26 1 -5.0001 -6.9880 -4.6125 27 6 -2.8003 -6.8646 -3.6546 28 8 -0.6554 -6.2420 -2.5086 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3634 0.8902 -0.5136 31 1 -0.3634 -0.8898 -0.5142 32 1 1.9740 2.1212 0.0004 33 1 4.5083 1.2893 -0.0011 34 1 0.8957 -2.5578 0.5141 35 1 2.5902 -3.1030 0.5131 36 1 1.1011 -4.8244 -0.9296 37 1 2.1023 -4.6157 -3.5623 38 1 0.4077 -4.0711 -3.5618 39 1 0.1968 -5.9037 -5.1740 40 1 1.5179 -7.0758 -4.8459 41 1 -0.0091 -8.7362 -4.0008 42 1 -1.0515 -7.9643 -5.2416 43 1 -1.6614 -8.4064 -1.3662 44 1 -2.2615 -9.2318 -2.8676 45 1 -6.2247 -6.1979 -0.1723 46 1 -3.1509 -7.4289 -4.5187 47 1 -2.9528 -5.7906 -3.7611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484788574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:19 Heat of formation + Delta-G solvation = 38.072750 kcal Electronic energy + Delta-G solvation = -28923.556217 eV Core-core repulsion = 24916.472104 eV Total energy + Delta-G solvation = -4007.084114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.30084 -41.57368 -40.57682 -38.35501 -35.80561 -34.56551 -34.44465 -33.18237 -32.99778 -31.16203 -29.26440 -27.95977 -27.76658 -27.05281 -25.08462 -22.89783 -22.59019 -22.28147 -21.80471 -20.83000 -20.61911 -19.55244 -18.59845 -18.02416 -17.76248 -17.29063 -16.80677 -16.57471 -16.18569 -15.92716 -15.63801 -15.33446 -15.22142 -15.07870 -14.86284 -14.79000 -14.52270 -14.30494 -13.87743 -13.83293 -13.62956 -13.45120 -13.32032 -13.09802 -12.96494 -12.67837 -12.62493 -12.40957 -12.25735 -11.83694 -11.71226 -11.62230 -11.43348 -11.35434 -11.30532 -10.84678 -10.27481 -10.25388 -10.23473 -9.47813 -9.24205 -8.62504 -5.44778 0.78551 1.36035 1.36343 1.40333 1.46868 1.62512 1.91400 2.13420 2.52632 2.59847 3.04998 3.15947 3.48560 3.53051 3.58493 3.60054 3.71816 3.75771 3.89694 4.03841 4.12157 4.12663 4.27466 4.38821 4.45511 4.51989 4.59913 4.62458 4.66116 4.74910 4.76532 4.80386 4.82095 4.92400 4.94115 4.95723 5.03588 5.11647 5.22546 5.23565 5.24763 5.30912 5.71718 5.95171 5.97991 6.24753 6.35688 6.70045 6.72170 7.02152 7.34224 8.29308 8.89512 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012263 B = 0.002997 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.719199 B = 9341.890503 C =10831.980021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.082 3.918 3 C -0.287 4.287 4 C 0.045 3.955 5 N -0.330 5.330 6 N -0.368 5.368 7 C 0.111 3.889 8 C 0.496 3.504 9 O -0.574 6.574 10 N -0.710 5.710 11 C 0.126 3.874 12 C 0.062 3.938 13 H 0.103 0.897 14 C -0.138 4.138 15 C -0.128 4.128 16 C 0.090 3.910 17 C 0.110 3.890 18 N -0.654 5.654 19 C -0.286 4.286 20 H 0.047 0.953 21 C -0.086 4.086 22 N -0.971 5.971 23 Si 1.101 2.899 24 H -0.288 1.288 25 H -0.301 1.301 26 H -0.247 1.247 27 C 0.086 3.914 28 O -0.364 6.364 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.168 0.832 33 H 0.211 0.789 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.417 0.583 37 H 0.094 0.906 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.246 0.754 46 H 0.075 0.925 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.932 3.689 -2.917 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.045 4.045 3 C -0.316 4.316 4 C -0.141 4.141 5 N -0.151 5.151 6 N -0.151 5.151 7 C -0.015 4.015 8 C 0.281 3.719 9 O -0.453 6.453 10 N -0.362 5.362 11 C 0.003 3.997 12 C 0.005 3.995 13 H 0.120 0.880 14 C -0.176 4.176 15 C -0.166 4.166 16 C 0.049 3.951 17 C -0.015 4.015 18 N -0.383 5.383 19 C -0.414 4.414 20 H 0.065 0.935 21 C -0.278 4.278 22 N -0.617 5.617 23 Si 0.927 3.073 24 H -0.215 1.215 25 H -0.229 1.229 26 H -0.172 1.172 27 C -0.039 4.039 28 O -0.284 6.284 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.185 0.815 33 H 0.227 0.773 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.254 0.746 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.138 0.862 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.055 0.945 46 H 0.093 0.907 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 21.652 4.053 -4.292 22.442 hybrid contribution -0.404 -0.514 1.845 1.957 sum 21.247 3.540 -2.447 21.679 Atomic orbital electron populations 1.20559 0.85896 1.04238 1.04529 1.21623 0.95820 0.87443 0.99606 1.21579 0.92239 0.99847 1.17917 1.24379 0.99430 0.91890 0.98426 1.77259 0.97255 1.14471 1.26097 1.48118 1.03969 1.05248 1.57752 1.21679 1.05504 0.79969 0.94300 1.21227 0.76522 0.82116 0.92032 1.90740 1.51489 1.55769 1.47261 1.45814 1.67517 1.12896 1.09994 1.21555 1.01372 0.93825 0.82973 1.23555 0.84801 0.94804 0.96377 0.87965 1.23264 1.01488 0.98188 0.94671 1.22923 0.96234 0.99530 0.97891 1.22850 0.90988 0.88816 0.92468 1.22942 0.85740 0.94166 0.98696 1.46161 1.25691 1.44388 1.22021 1.19944 0.97497 1.28135 0.95849 0.93507 1.27019 0.93587 0.97729 1.09423 1.71010 1.42297 1.44408 1.03942 0.83326 0.75184 0.77037 0.71786 1.21489 1.22929 1.17154 1.23332 0.92766 0.98029 0.89773 1.88404 1.24557 1.57379 1.58022 0.88048 0.88376 0.92331 0.81470 0.77256 0.83483 0.83351 0.74582 0.88824 0.93111 0.90276 0.86207 0.87566 0.88283 0.93777 0.90928 0.94498 0.90733 0.94626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.74 9.90 71.23 0.71 -1.03 16 2 C 0.08 1.92 6.93 41.41 0.29 2.21 16 3 C -0.29 -6.21 10.72 21.99 0.24 -5.98 16 4 C 0.04 1.00 12.03 85.23 1.02 2.02 16 5 N -0.33 -9.05 12.58 -57.03 -0.72 -9.77 16 6 N -0.37 -9.27 3.10 -338.42 -1.05 -10.32 16 7 C 0.11 2.14 6.54 85.63 0.56 2.70 16 8 C 0.50 12.46 7.90 87.65 0.69 13.15 16 9 O -0.57 -19.86 16.43 -3.05 -0.05 -19.91 16 10 N -0.71 -14.99 5.54 -463.05 -2.56 -17.56 16 11 C 0.13 2.74 5.39 86.38 0.47 3.20 16 12 C 0.06 1.21 3.48 31.28 0.11 1.32 16 13 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 14 C -0.14 -2.10 6.58 32.14 0.21 -1.89 16 15 C -0.13 -2.33 6.39 31.67 0.20 -2.13 16 16 C 0.09 2.75 1.75 -10.67 -0.02 2.73 16 17 C 0.11 3.98 8.20 83.38 0.68 4.66 16 18 N -0.65 -31.88 3.63 -739.01 -2.68 -34.56 16 19 C -0.29 -17.04 11.03 84.03 0.93 -16.11 16 20 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 21 C -0.09 -5.25 5.50 84.86 0.47 -4.78 16 22 N -0.97 -64.02 13.70 21.65 0.30 -63.73 16 23 Si 1.10 54.45 25.51 68.60 1.75 56.20 16 24 H -0.29 -13.79 6.97 99.48 0.69 -13.10 16 25 H -0.30 -15.06 7.11 99.48 0.71 -14.36 16 26 H -0.25 -10.60 5.65 99.48 0.56 -10.03 16 27 C 0.09 3.41 5.09 83.48 0.43 3.84 16 28 O -0.36 -11.28 10.84 -148.98 -1.62 -12.90 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.06 1.23 7.72 -2.39 -0.02 1.21 16 32 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 33 H 0.21 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.15 2.09 7.66 -2.39 -0.02 2.07 16 35 H 0.15 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.42 7.07 8.47 -92.71 -0.79 6.28 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.30 8.05 -2.39 -0.02 1.28 16 40 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.11 1.47 8.13 -2.39 -0.02 1.45 16 42 H 0.10 1.63 7.81 -2.38 -0.02 1.61 16 43 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 44 H 0.07 2.29 8.13 -2.39 -0.02 2.27 16 45 H 0.25 16.25 8.73 -92.71 -0.81 15.44 16 46 H 0.08 2.67 6.79 -2.39 -0.02 2.66 16 47 H 0.04 1.56 6.28 -2.39 -0.01 1.55 16 Total: -1.00 -89.63 385.56 0.34 -89.29 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.00 Total: 19.33 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 6.98 Total: 3.91 kcal Atomic # 7 Polarization: -129.21 SS G_CDS: -6.71 Total: -135.92 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.67 Total: -32.81 kcal Atomic # 14 Polarization: 54.45 SS G_CDS: 1.75 Total: 56.20 kcal Total: -89.63 0.34 -89.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484788574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.361 kcal (2) G-P(sol) polarization free energy of solvation -89.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds