Wall clock time and date at job start Tue Mar 31 2020 19:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32096 * 119.84618 * 2 1 4 4 C 1.32612 * 119.99794 * 180.02562 * 3 2 1 5 5 O 1.35429 * 120.14130 * 179.97438 * 4 3 2 6 6 C 1.40218 * 119.71266 * 359.97438 * 4 3 2 7 7 C 1.47829 * 120.14814 * 180.02562 * 6 4 3 8 8 O 1.21556 * 120.00268 * 359.97438 * 7 6 4 9 9 N 1.34779 * 120.00023 * 179.97438 * 7 6 4 10 10 C 1.46501 * 120.00025 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.46940 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.47187 * 179.97438 * 11 10 9 13 13 N 1.46494 * 109.47399 * 179.97438 * 12 11 10 14 14 C 1.36939 * 120.00234 * 270.00341 * 13 12 11 15 15 H 1.07995 * 120.00056 * 140.87566 * 14 13 12 16 16 C 1.38811 * 119.99787 * 320.87351 * 14 13 12 17 17 N 1.31617 * 119.99969 * 156.83458 * 16 14 13 18 18 Si 1.86801 * 120.00072 * 336.84290 * 16 14 13 19 19 H 1.48493 * 109.47385 * 92.02297 * 18 16 14 20 20 H 1.48500 * 109.47041 * 212.02529 * 18 16 14 21 21 H 1.48503 * 109.47002 * 332.02137 * 18 16 14 22 22 C 1.46499 * 120.00043 * 89.99799 * 13 12 11 23 23 C 1.52999 * 117.50085 * 184.00652 * 22 13 12 24 24 C 1.53002 * 60.00194 * 252.51362 * 23 22 13 25 25 N 1.32994 * 119.70331 * 0.27416 * 6 4 3 26 26 C 1.31761 * 119.98647 * 359.44840 * 25 6 4 27 27 C 1.50707 * 119.85348 * 180.25055 * 26 25 6 28 28 H 1.08996 * 109.46946 * 89.99902 * 1 2 3 29 29 H 1.09005 * 109.47206 * 210.00065 * 1 2 3 30 30 H 1.09002 * 109.47269 * 330.00006 * 1 2 3 31 31 H 0.96709 * 113.99691 * 270.01760 * 5 4 3 32 32 H 0.96996 * 120.00278 * 0.02562 * 9 7 6 33 33 H 1.08995 * 109.47273 * 60.00132 * 10 9 7 34 34 H 1.09002 * 109.46935 * 300.00198 * 10 9 7 35 35 H 1.09004 * 109.47441 * 60.00298 * 11 10 9 36 36 H 1.08998 * 109.47347 * 300.00001 * 11 10 9 37 37 H 1.08998 * 109.47009 * 300.00245 * 12 11 10 38 38 H 1.09004 * 109.46655 * 59.99855 * 12 11 10 39 39 H 0.96999 * 120.00065 * 179.97438 * 17 16 14 40 40 H 1.09004 * 115.55066 * 329.72028 * 22 13 12 41 41 H 1.08991 * 117.50019 * 0.02562 * 23 22 13 42 42 H 1.09008 * 117.49622 * 145.02411 * 23 22 13 43 43 H 1.09004 * 117.49484 * 252.51513 * 24 23 22 44 44 H 1.08995 * 117.51900 * 107.48082 * 24 23 22 45 45 H 1.08999 * 109.47291 * 270.30630 * 27 26 25 46 46 H 1.09004 * 109.46694 * 30.30571 * 27 26 25 47 47 H 1.09002 * 109.47259 * 150.30165 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1644 1.1458 0.0000 4 6 3.4906 1.1493 -0.0005 5 8 4.1675 2.3222 -0.0010 6 6 4.1888 -0.0667 -0.0005 7 6 5.6670 -0.0740 -0.0005 8 8 6.2801 0.9756 -0.0010 9 7 6.3351 -1.2446 0.0000 10 6 7.8001 -1.2518 -0.0005 11 6 8.3029 -2.6968 -0.0004 12 6 9.8330 -2.7045 -0.0017 13 7 10.3145 -4.0880 -0.0009 14 6 10.5404 -4.7338 1.1853 15 1 10.2784 -5.7761 1.2912 16 6 11.1063 -4.0486 2.2517 17 7 10.9187 -4.4758 3.4824 18 14 12.1340 -2.5201 1.9401 19 1 11.2653 -1.3176 2.0063 20 1 13.1975 -2.4199 2.9716 21 1 12.7562 -2.6078 0.5945 22 6 10.5542 -4.7809 -1.2693 23 6 10.9661 -6.2529 -1.2033 24 6 11.9936 -5.1876 -1.5910 25 7 3.5151 -1.2134 -0.0055 26 6 2.1976 -1.2032 0.0005 27 6 1.4373 -2.5044 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 4.3635 2.6628 -0.8847 32 1 5.8461 -2.0822 0.0000 33 1 8.1664 -0.7393 0.8889 34 1 8.1656 -0.7404 -0.8910 35 1 7.9368 -3.2091 -0.8902 36 1 7.9374 -3.2087 0.8898 37 1 10.1982 -2.1927 -0.8921 38 1 10.1996 -2.1921 0.8879 39 1 11.3144 -3.9972 4.2275 40 1 9.9207 -4.4719 -2.1008 41 1 11.0584 -6.7059 -0.2163 42 1 10.6034 -6.9128 -1.9915 43 1 12.3069 -5.1467 -2.6343 44 1 12.7623 -4.9394 -0.8592 45 1 1.2540 -2.8182 -1.0271 46 1 2.0225 -3.2671 0.5144 47 1 0.4855 -2.3692 0.5144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490377913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:59 Heat of formation + Delta-G solvation = 22.066608 kcal Electronic energy + Delta-G solvation = -28274.325354 eV Core-core repulsion = 24266.547162 eV Total energy + Delta-G solvation = -4007.778192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.85634 -39.40520 -37.93983 -37.38007 -35.39729 -35.06319 -33.72658 -33.54522 -31.85303 -30.09495 -29.22163 -27.88949 -25.49202 -24.15087 -23.78952 -23.04336 -21.66888 -21.20054 -20.76396 -19.63142 -19.09584 -18.60745 -17.66873 -16.55682 -16.50087 -15.72663 -15.58970 -15.31470 -15.20442 -15.02374 -14.63731 -14.11078 -13.93414 -13.68032 -13.56753 -13.47060 -13.38772 -12.81212 -12.67755 -12.46087 -12.31873 -12.16751 -12.12073 -12.05011 -11.98799 -11.29641 -11.16114 -11.07605 -10.85608 -10.65597 -10.43762 -10.31366 -9.97111 -9.74194 -9.47822 -9.45638 -9.39775 -9.26572 -8.92376 -8.51626 -6.75045 -6.06253 -3.48992 -0.04109 0.55118 2.48996 2.80482 3.11764 3.29165 3.38605 3.45563 3.51483 3.54029 3.80243 4.18475 4.43082 4.47634 4.67174 4.71889 4.73892 4.85793 4.91046 5.03754 5.15678 5.23962 5.28874 5.40240 5.46237 5.47487 5.55684 5.77102 5.80107 5.86231 5.96398 6.00765 6.08118 6.17162 6.32468 6.41242 6.48352 6.53113 6.65860 6.73911 6.88766 6.92646 7.10330 7.13291 7.22345 7.55030 8.00919 8.13619 8.36016 8.94284 9.65131 10.05657 11.08459 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.002499 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.281802 B =11202.545931 C =11807.960861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.127 3.873 3 N -0.463 5.463 4 C 0.321 3.679 5 O -0.450 6.450 6 C 0.016 3.984 7 C 0.569 3.431 8 O -0.518 6.518 9 N -0.702 5.702 10 C 0.117 3.883 11 C -0.145 4.145 12 C 0.142 3.858 13 N -0.572 5.572 14 C -0.272 4.272 15 H 0.082 0.918 16 C 0.042 3.958 17 N -0.894 5.894 18 Si 0.871 3.129 19 H -0.281 1.281 20 H -0.301 1.301 21 H -0.266 1.266 22 C 0.120 3.880 23 C -0.189 4.189 24 C -0.225 4.225 25 N -0.393 5.393 26 C 0.067 3.933 27 C -0.103 4.103 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.407 0.593 32 H 0.410 0.590 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.060 0.940 39 H 0.264 0.736 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.067 6.411 -10.959 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.015 4.015 3 N -0.188 5.188 4 C 0.139 3.861 5 O -0.257 6.257 6 C -0.127 4.127 7 C 0.351 3.649 8 O -0.394 6.394 9 N -0.353 5.353 10 C -0.007 4.007 11 C -0.186 4.186 12 C 0.016 3.984 13 N -0.291 5.291 14 C -0.400 4.400 15 H 0.100 0.900 16 C -0.160 4.160 17 N -0.534 5.534 18 Si 0.700 3.300 19 H -0.209 1.209 20 H -0.228 1.228 21 H -0.191 1.191 22 C 0.011 3.989 23 C -0.227 4.227 24 C -0.265 4.265 25 N -0.112 5.112 26 C -0.077 4.077 27 C -0.161 4.161 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.268 0.732 32 H 0.246 0.754 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.440 7.230 -10.151 23.940 hybrid contribution 0.592 0.612 -0.415 0.948 sum -19.847 7.842 -10.566 23.813 Atomic orbital electron populations 1.20914 0.87049 1.04647 1.04055 1.22266 0.98490 0.87617 0.93173 1.67968 1.08274 1.30243 1.12308 1.19964 0.86799 0.86560 0.92765 1.84763 1.72680 1.34363 1.33862 1.22499 0.96313 0.89580 1.04319 1.17466 0.84591 0.84728 0.78066 1.90835 1.67740 1.31276 1.49501 1.45953 1.08204 1.08386 1.72796 1.21564 0.77609 0.99220 1.02262 1.22391 0.99870 0.93231 1.03059 1.21090 0.90742 0.86607 0.99941 1.43662 1.73605 1.10635 1.01175 1.18695 1.36752 0.97674 0.86892 0.90049 1.25507 0.97382 0.97913 0.95201 1.69866 1.44044 1.41471 0.98027 0.87067 0.81203 0.83622 0.78093 1.20918 1.22832 1.19100 1.21168 0.93967 0.94007 0.89719 1.23057 1.04673 0.92438 1.02524 1.23376 0.96298 1.07030 0.99840 1.68202 1.08509 1.27937 1.06571 1.22169 0.89979 0.97117 0.98442 1.20811 0.99330 0.92022 1.03907 0.89226 0.89185 0.89705 0.73241 0.75427 0.91194 0.91506 0.92030 0.90345 0.93813 0.92193 0.92565 0.89116 0.87922 0.90531 0.90858 0.89308 0.89582 0.89537 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 9.78 36.01 0.35 -0.16 16 2 C 0.13 1.14 6.79 -82.30 -0.56 0.59 16 3 N -0.46 -5.40 10.44 -9.01 -0.09 -5.49 16 4 C 0.32 4.16 7.78 -16.47 -0.13 4.04 16 5 O -0.45 -5.69 11.64 -39.83 -0.46 -6.15 16 6 C 0.02 0.22 6.77 -82.70 -0.56 -0.34 16 7 C 0.57 8.77 7.80 -12.34 -0.10 8.68 16 8 O -0.52 -9.21 15.17 -16.54 -0.25 -9.46 16 9 N -0.70 -10.26 5.55 -61.26 -0.34 -10.60 16 10 C 0.12 1.86 5.67 -4.04 -0.02 1.84 16 11 C -0.15 -2.51 5.65 -26.73 -0.15 -2.66 16 12 C 0.14 2.92 4.56 -4.04 -0.02 2.90 16 13 N -0.57 -13.02 2.38 -165.66 -0.39 -13.41 16 14 C -0.27 -7.27 8.93 -15.06 -0.13 -7.40 16 15 H 0.08 2.36 6.85 -52.49 -0.36 2.00 16 16 C 0.04 1.16 5.28 -17.43 -0.09 1.07 16 17 N -0.89 -26.68 13.97 55.49 0.78 -25.90 16 18 Si 0.87 21.87 25.32 -169.99 -4.30 17.57 16 19 H -0.28 -6.86 6.52 56.52 0.37 -6.49 16 20 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.12 2.36 6.57 -67.93 -0.45 1.91 16 23 C -0.19 -3.54 9.80 -26.73 -0.26 -3.80 16 24 C -0.22 -4.26 10.35 -26.73 -0.28 -4.53 16 25 N -0.39 -4.68 9.62 -5.80 -0.06 -4.73 16 26 C 0.07 0.61 6.78 -82.44 -0.56 0.05 16 27 C -0.10 -0.55 9.77 36.01 0.35 -0.20 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.22 5.93 -51.93 -0.31 -0.09 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.41 3.29 9.06 45.56 0.41 3.70 16 32 H 0.41 5.42 7.82 -40.82 -0.32 5.11 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 38 H 0.06 1.37 3.45 -51.93 -0.18 1.19 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.10 2.18 6.44 -51.93 -0.33 1.85 16 42 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 45 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.09 0.25 5.93 -51.93 -0.31 -0.06 16 LS Contribution 386.68 15.07 5.83 5.83 Total: -1.00 -34.09 386.68 -7.96 -42.05 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.06 Total: 8.34 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -2.60 Total: 1.97 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.11 Total: -60.14 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.71 Total: -15.62 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.30 Total: 17.57 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.09 -7.96 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490377913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.117 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds