Wall clock time and date at job start Tue Mar 31 2020 19:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32096 * 119.84618 * 2 1 4 4 C 1.32612 * 119.99794 * 180.02562 * 3 2 1 5 5 O 1.35429 * 120.14130 * 179.97438 * 4 3 2 6 6 C 1.40218 * 119.71266 * 359.97438 * 4 3 2 7 7 C 1.47829 * 120.14814 * 180.02562 * 6 4 3 8 8 O 1.21556 * 120.00268 * 359.97438 * 7 6 4 9 9 N 1.34779 * 120.00023 * 179.97438 * 7 6 4 10 10 C 1.46501 * 120.00025 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.46940 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.47187 * 179.97438 * 11 10 9 13 13 N 1.46494 * 109.47399 * 179.97438 * 12 11 10 14 14 C 1.36939 * 120.00234 * 270.00341 * 13 12 11 15 15 H 1.07995 * 120.00056 * 140.87566 * 14 13 12 16 16 C 1.38811 * 119.99787 * 320.87351 * 14 13 12 17 17 N 1.31617 * 119.99969 * 156.83458 * 16 14 13 18 18 Si 1.86801 * 120.00072 * 336.84290 * 16 14 13 19 19 H 1.48493 * 109.47385 * 92.02297 * 18 16 14 20 20 H 1.48500 * 109.47041 * 212.02529 * 18 16 14 21 21 H 1.48503 * 109.47002 * 332.02137 * 18 16 14 22 22 C 1.46499 * 120.00043 * 89.99799 * 13 12 11 23 23 C 1.52999 * 117.50085 * 184.00652 * 22 13 12 24 24 C 1.53002 * 60.00194 * 252.51362 * 23 22 13 25 25 N 1.32994 * 119.70331 * 0.27416 * 6 4 3 26 26 C 1.31761 * 119.98647 * 359.44840 * 25 6 4 27 27 C 1.50707 * 119.85348 * 180.25055 * 26 25 6 28 28 H 1.08996 * 109.46946 * 89.99902 * 1 2 3 29 29 H 1.09005 * 109.47206 * 210.00065 * 1 2 3 30 30 H 1.09002 * 109.47269 * 330.00006 * 1 2 3 31 31 H 0.96709 * 113.99691 * 270.01760 * 5 4 3 32 32 H 0.96996 * 120.00278 * 0.02562 * 9 7 6 33 33 H 1.08995 * 109.47273 * 60.00132 * 10 9 7 34 34 H 1.09002 * 109.46935 * 300.00198 * 10 9 7 35 35 H 1.09004 * 109.47441 * 60.00298 * 11 10 9 36 36 H 1.08998 * 109.47347 * 300.00001 * 11 10 9 37 37 H 1.08998 * 109.47009 * 300.00245 * 12 11 10 38 38 H 1.09004 * 109.46655 * 59.99855 * 12 11 10 39 39 H 0.96999 * 120.00065 * 179.97438 * 17 16 14 40 40 H 1.09004 * 115.55066 * 329.72028 * 22 13 12 41 41 H 1.08991 * 117.50019 * 0.02562 * 23 22 13 42 42 H 1.09008 * 117.49622 * 145.02411 * 23 22 13 43 43 H 1.09004 * 117.49484 * 252.51513 * 24 23 22 44 44 H 1.08995 * 117.51900 * 107.48082 * 24 23 22 45 45 H 1.08999 * 109.47291 * 270.30630 * 27 26 25 46 46 H 1.09004 * 109.46694 * 30.30571 * 27 26 25 47 47 H 1.09002 * 109.47259 * 150.30165 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1644 1.1458 0.0000 4 6 3.4906 1.1493 -0.0005 5 8 4.1675 2.3222 -0.0010 6 6 4.1888 -0.0667 -0.0005 7 6 5.6670 -0.0740 -0.0005 8 8 6.2801 0.9756 -0.0010 9 7 6.3351 -1.2446 0.0000 10 6 7.8001 -1.2518 -0.0005 11 6 8.3029 -2.6968 -0.0004 12 6 9.8330 -2.7045 -0.0017 13 7 10.3145 -4.0880 -0.0009 14 6 10.5404 -4.7338 1.1853 15 1 10.2784 -5.7761 1.2912 16 6 11.1063 -4.0486 2.2517 17 7 10.9187 -4.4758 3.4824 18 14 12.1340 -2.5201 1.9401 19 1 11.2653 -1.3176 2.0063 20 1 13.1975 -2.4199 2.9716 21 1 12.7562 -2.6078 0.5945 22 6 10.5542 -4.7809 -1.2693 23 6 10.9661 -6.2529 -1.2033 24 6 11.9936 -5.1876 -1.5910 25 7 3.5151 -1.2134 -0.0055 26 6 2.1976 -1.2032 0.0005 27 6 1.4373 -2.5044 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 4.3635 2.6628 -0.8847 32 1 5.8461 -2.0822 0.0000 33 1 8.1664 -0.7393 0.8889 34 1 8.1656 -0.7404 -0.8910 35 1 7.9368 -3.2091 -0.8902 36 1 7.9374 -3.2087 0.8898 37 1 10.1982 -2.1927 -0.8921 38 1 10.1996 -2.1921 0.8879 39 1 11.3144 -3.9972 4.2275 40 1 9.9207 -4.4719 -2.1008 41 1 11.0584 -6.7059 -0.2163 42 1 10.6034 -6.9128 -1.9915 43 1 12.3069 -5.1467 -2.6343 44 1 12.7623 -4.9394 -0.8592 45 1 1.2540 -2.8182 -1.0271 46 1 2.0225 -3.2671 0.5144 47 1 0.4855 -2.3692 0.5144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490377913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:58 Heat of formation + Delta-G solvation = -5.063366 kcal Electronic energy + Delta-G solvation = -28275.501798 eV Core-core repulsion = 24266.547162 eV Total energy + Delta-G solvation = -4008.954636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.69297 -40.55872 -39.07855 -38.79124 -36.75412 -35.89609 -35.23709 -34.36244 -33.71157 -31.57523 -29.92863 -28.68358 -27.09354 -25.63448 -24.67586 -24.04899 -23.13401 -22.64314 -21.88639 -21.38708 -19.97947 -19.47158 -18.72506 -18.42053 -17.48421 -17.29841 -17.11811 -16.72561 -16.49587 -15.85861 -15.53888 -15.49430 -15.21110 -14.93513 -14.56144 -14.28495 -14.14525 -13.99880 -13.92996 -13.92019 -13.76705 -13.34408 -12.99944 -12.88431 -12.77110 -12.68382 -12.55539 -12.49871 -12.42217 -12.06987 -12.02168 -11.79971 -11.54096 -11.48123 -11.24696 -10.95213 -10.59541 -10.31757 -10.25628 -9.94142 -8.61915 -8.23029 -5.60507 -0.89342 -0.25376 1.27613 1.38416 1.48535 1.48755 1.79887 2.21359 2.38778 2.46660 2.72103 2.97866 3.06540 3.19580 3.36146 3.43673 3.73137 3.91169 3.99218 4.04380 4.12961 4.30754 4.35666 4.41862 4.49997 4.56465 4.57089 4.70185 4.70995 4.76842 4.80782 4.87443 4.95509 4.96111 5.04115 5.10206 5.20935 5.25553 5.33750 5.41071 5.43834 5.55762 5.87954 5.94392 6.20989 6.24250 6.43634 6.50783 6.97380 7.00134 7.63015 8.03938 8.96040 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.002499 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.281802 B =11202.545931 C =11807.960861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.137 3.863 3 N -0.481 5.481 4 C 0.310 3.690 5 O -0.467 6.467 6 C -0.011 4.011 7 C 0.568 3.432 8 O -0.550 6.550 9 N -0.697 5.697 10 C 0.127 3.873 11 C -0.126 4.126 12 C 0.135 3.865 13 N -0.586 5.586 14 C -0.247 4.247 15 H 0.048 0.952 16 C -0.013 4.013 17 N -0.944 5.944 18 Si 0.927 3.073 19 H -0.272 1.272 20 H -0.312 1.312 21 H -0.259 1.259 22 C 0.106 3.894 23 C -0.186 4.186 24 C -0.217 4.217 25 N -0.407 5.407 26 C 0.067 3.933 27 C -0.102 4.102 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.421 0.579 32 H 0.417 0.583 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.262 0.738 40 H 0.130 0.870 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.057 0.943 45 H 0.105 0.895 46 H 0.079 0.921 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.597 6.346 -13.813 28.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.007 4.007 3 N -0.206 5.206 4 C 0.129 3.871 5 O -0.276 6.276 6 C -0.152 4.152 7 C 0.353 3.647 8 O -0.427 6.427 9 N -0.349 5.349 10 C 0.003 3.997 11 C -0.166 4.166 12 C 0.010 3.990 13 N -0.305 5.305 14 C -0.377 4.377 15 H 0.066 0.934 16 C -0.210 4.210 17 N -0.587 5.587 18 Si 0.757 3.243 19 H -0.199 1.199 20 H -0.241 1.241 21 H -0.183 1.183 22 C -0.001 4.001 23 C -0.224 4.224 24 C -0.258 4.258 25 N -0.126 5.126 26 C -0.078 4.078 27 C -0.159 4.159 28 H 0.130 0.870 29 H 0.138 0.862 30 H 0.102 0.898 31 H 0.284 0.716 32 H 0.254 0.746 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.147 0.853 41 H 0.086 0.914 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.075 0.925 45 H 0.124 0.876 46 H 0.098 0.902 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -22.953 7.178 -13.062 27.368 hybrid contribution 1.177 0.511 0.392 1.341 sum -21.776 7.689 -12.670 26.341 Atomic orbital electron populations 1.21148 0.83538 1.06057 1.05796 1.23104 1.00562 0.86793 0.90283 1.68078 1.07561 1.31618 1.13348 1.20036 0.87441 0.86342 0.93243 1.84703 1.72995 1.34555 1.35371 1.22114 0.95159 0.90506 1.07418 1.17763 0.85630 0.84211 0.77132 1.90800 1.68734 1.32202 1.51011 1.45825 1.07608 1.08727 1.72700 1.21344 0.78491 0.98016 1.01895 1.22103 0.97685 0.93992 1.02814 1.21171 0.92580 0.85265 0.99973 1.43775 1.74254 1.11390 1.01125 1.18538 1.34431 0.96360 0.88393 0.93397 1.26029 0.98992 1.00971 0.95013 1.69981 1.46271 1.43601 0.98884 0.86134 0.79437 0.81133 0.77635 1.19931 1.24101 1.18283 1.21547 0.95193 0.94192 0.89167 1.23040 1.04805 0.92639 1.01960 1.23358 0.94932 1.06394 1.01070 1.68187 1.09986 1.27279 1.07162 1.22919 0.89226 0.99004 0.96674 1.21011 0.99893 0.89548 1.05459 0.86981 0.86219 0.89818 0.71637 0.74629 0.93370 0.90151 0.89689 0.93049 0.90960 0.94859 0.92935 0.85300 0.91449 0.86831 0.87118 0.92472 0.87643 0.90213 0.86533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 9.78 71.24 0.70 0.11 16 2 C 0.14 2.13 6.79 42.64 0.29 2.42 16 3 N -0.48 -10.76 10.44 -295.25 -3.08 -13.84 16 4 C 0.31 8.10 7.78 85.06 0.66 8.76 16 5 O -0.47 -12.20 11.64 -66.35 -0.77 -12.97 16 6 C -0.01 -0.31 6.77 41.99 0.28 -0.02 16 7 C 0.57 17.81 7.80 86.78 0.68 18.48 16 8 O -0.55 -20.05 15.17 17.00 0.26 -19.79 16 9 N -0.70 -20.28 5.55 -465.99 -2.58 -22.87 16 10 C 0.13 3.97 5.67 86.38 0.49 4.46 16 11 C -0.13 -4.23 5.65 30.60 0.17 -4.06 16 12 C 0.14 5.37 4.56 86.38 0.39 5.76 16 13 N -0.59 -26.17 2.38 -678.02 -1.61 -27.78 16 14 C -0.25 -13.55 8.93 84.03 0.75 -12.80 16 15 H 0.05 2.92 6.85 -2.91 -0.02 2.90 16 16 C -0.01 -0.76 5.28 84.86 0.45 -0.31 16 17 N -0.94 -58.79 13.97 21.65 0.30 -58.49 16 18 Si 0.93 46.42 25.32 68.60 1.74 48.15 16 19 H -0.27 -13.07 6.52 99.48 0.65 -12.42 16 20 H -0.31 -16.06 7.11 99.48 0.71 -15.35 16 21 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 22 C 0.11 3.89 6.57 44.99 0.30 4.18 16 23 C -0.19 -6.65 9.80 30.59 0.30 -6.35 16 24 C -0.22 -7.68 10.35 30.60 0.32 -7.36 16 25 N -0.41 -9.32 9.62 -172.25 -1.66 -10.98 16 26 C 0.07 1.09 6.78 42.69 0.29 1.38 16 27 C -0.10 -0.71 9.77 71.24 0.70 -0.02 16 28 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.12 -0.04 5.93 -2.38 -0.01 -0.06 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.42 7.21 9.06 -74.05 -0.67 6.54 16 32 H 0.42 10.86 7.82 -92.71 -0.72 10.14 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 36 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 38 H 0.03 1.51 3.45 -2.38 -0.01 1.50 16 39 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 40 H 0.13 3.78 8.14 -2.39 -0.02 3.76 16 41 H 0.07 2.90 6.44 -2.39 -0.02 2.89 16 42 H 0.11 3.20 8.14 -2.38 -0.02 3.19 16 43 H 0.11 3.10 8.14 -2.38 -0.02 3.08 16 44 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.12 0.09 5.93 -2.39 -0.01 0.07 16 Total: -1.00 -78.41 386.68 -1.08 -79.49 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -0.43 Total: 24.43 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 6.76 Total: 14.64 kcal Atomic # 7 Polarization: -125.32 SS G_CDS: -8.63 Total: -133.95 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -0.51 Total: -32.76 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.74 Total: 48.15 kcal Total: -78.41 -1.08 -79.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490377913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.426 kcal (2) G-P(sol) polarization free energy of solvation -78.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds