Wall clock time and date at job start Tue Mar 31 2020 19:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38221 * 120.41773 * 2 1 4 4 N 1.31862 * 120.76221 * 180.25125 * 3 2 1 5 5 C 1.31881 * 121.72315 * 0.04192 * 4 3 2 6 6 C 1.38185 * 120.76978 * 359.96041 * 5 4 3 7 7 C 1.38635 * 120.41887 * 180.27454 * 2 1 3 8 8 C 1.50701 * 120.78677 * 359.70635 * 7 2 1 9 9 C 1.50692 * 109.47149 * 85.00080 * 8 7 2 10 10 O 1.21287 * 120.00216 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00262 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00559 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47519 * 179.97438 * 12 11 9 14 14 N 1.46893 * 109.47444 * 180.02562 * 13 12 11 15 15 C 1.46911 * 111.00013 * 66.04861 * 14 13 12 16 16 C 1.46900 * 111.00322 * 189.99746 * 14 13 12 17 17 C 1.50700 * 109.47433 * 170.00025 * 16 14 13 18 18 O 1.21300 * 119.99560 * 0.02562 * 17 16 14 19 19 N 1.34773 * 120.00298 * 180.02562 * 17 16 14 20 20 C 1.37096 * 119.99931 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00505 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99968 * 179.97438 * 20 19 17 23 23 N 1.31415 * 120.00202 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99755 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47542 * 90.00106 * 24 22 20 26 26 H 1.48498 * 109.46789 * 210.00085 * 24 22 20 27 27 H 1.48497 * 109.46807 * 329.99725 * 24 22 20 28 28 H 1.08999 * 109.47245 * 269.72372 * 1 2 3 29 29 H 1.08991 * 109.46674 * 29.72400 * 1 2 3 30 30 H 1.09007 * 109.46846 * 149.72305 * 1 2 3 31 31 H 1.07993 * 119.62150 * 0.27487 * 3 2 1 32 32 H 1.08011 * 119.61586 * 179.97438 * 5 4 3 33 33 H 1.07998 * 120.41936 * 180.02562 * 6 5 4 34 34 H 1.09005 * 109.46822 * 205.00093 * 8 7 2 35 35 H 1.08995 * 109.47233 * 324.99475 * 8 7 2 36 36 H 0.97008 * 119.99915 * 0.02562 * 11 9 8 37 37 H 1.08992 * 109.47168 * 300.00180 * 12 11 9 38 38 H 1.09007 * 109.46777 * 60.00305 * 12 11 9 39 39 H 1.09005 * 109.47122 * 300.00576 * 13 12 11 40 40 H 1.09002 * 109.47208 * 60.00085 * 13 12 11 41 41 H 1.08994 * 109.46922 * 59.99944 * 15 14 13 42 42 H 1.08997 * 109.46933 * 180.02562 * 15 14 13 43 43 H 1.08996 * 109.46841 * 300.00173 * 15 14 13 44 44 H 1.09000 * 109.47579 * 290.00403 * 16 14 13 45 45 H 1.09003 * 109.46767 * 50.00339 * 16 14 13 46 46 H 0.96999 * 120.00088 * 359.97438 * 19 17 16 47 47 H 0.97000 * 120.00011 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0050 5 6 4.2256 0.0823 -0.0109 6 6 3.5948 -1.1471 -0.0113 7 6 2.2090 -1.1955 -0.0057 8 6 1.4831 -2.5162 -0.0054 9 6 1.1264 -2.8937 -1.4200 10 8 1.4311 -2.1620 -2.3381 11 7 0.4687 -4.0442 -1.6651 12 6 0.1214 -4.4110 -3.0402 13 6 -0.6142 -5.7525 -3.0401 14 7 -0.9619 -6.1205 -4.4190 15 6 0.2451 -6.3841 -5.2139 16 6 -1.8702 -7.2748 -4.4428 17 6 -2.3973 -7.4706 -5.8410 18 8 -2.0500 -6.7224 -6.7303 19 7 -3.2545 -8.4770 -6.1033 20 6 -3.7335 -8.6554 -7.3754 21 1 -3.4244 -7.9892 -8.1673 22 6 -4.6169 -9.6933 -7.6459 23 7 -5.0765 -9.8640 -8.8652 24 14 -5.1511 -10.8460 -6.2764 25 1 -6.3721 -10.3081 -5.6246 26 1 -5.4427 -12.1869 -6.8438 27 1 -4.0630 -10.9593 -5.2723 28 1 -0.3634 -0.0050 1.0276 29 1 -0.3632 0.8924 -0.5095 30 1 -0.3633 -0.8876 -0.5182 31 1 1.6675 2.1276 0.0045 32 1 5.3047 0.1285 -0.0153 33 1 4.1737 -2.0588 -0.0158 34 1 2.1263 -3.2841 0.4244 35 1 0.5731 -2.4305 0.5883 36 1 0.2247 -4.6293 -0.9308 37 1 -0.5222 -3.6433 -3.4695 38 1 1.0314 -4.4962 -3.6344 39 1 0.0298 -6.5201 -2.6109 40 1 -1.5241 -5.6678 -2.4459 41 1 0.8046 -7.2040 -4.7638 42 1 -0.0410 -6.6538 -6.2304 43 1 0.8673 -5.4894 -5.2372 44 1 -1.3304 -8.1685 -4.1295 45 1 -2.7028 -7.0960 -3.7624 46 1 -3.5319 -9.0756 -5.3922 47 1 -5.6929 -10.5888 -9.0541 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492252046.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:12 Heat of formation + Delta-G solvation = -26.104688 kcal Electronic energy + Delta-G solvation = -27337.072049 eV Core-core repulsion = 23327.204993 eV Total energy + Delta-G solvation = -4009.867056 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.94197 -39.69235 -38.83707 -36.98694 -34.89909 -34.63433 -33.89371 -32.79507 -31.70815 -30.35861 -28.78190 -27.85905 -27.37518 -25.38627 -23.89439 -23.10857 -22.14794 -21.34921 -20.59205 -19.39207 -18.30705 -17.48260 -17.17520 -17.07466 -16.24215 -16.04115 -15.86535 -15.44223 -15.20860 -14.98938 -14.74065 -14.53862 -14.14479 -13.83650 -13.72542 -13.61254 -13.30719 -13.13713 -13.10680 -13.08765 -12.79416 -12.47122 -12.45531 -12.10672 -11.90922 -11.74327 -11.57889 -11.42180 -11.17428 -11.07894 -10.62874 -10.37834 -10.00146 -9.78439 -9.77312 -9.56987 -9.33970 -9.20674 -8.64204 -8.21190 -8.05855 -6.33336 -3.84914 0.81618 0.87254 2.30220 2.76005 2.99047 3.03873 3.12418 3.48583 3.69863 3.95856 4.02767 4.07702 4.17196 4.29493 4.48458 4.55981 4.60982 4.68570 4.77677 4.87409 4.89457 4.94331 5.07523 5.17685 5.19436 5.26151 5.28096 5.43448 5.44652 5.54949 5.60750 5.70612 5.72487 5.76089 5.76845 5.86228 5.92045 5.96075 6.10596 6.38859 6.46064 7.02439 7.13793 7.18760 7.55609 7.67221 7.89319 8.12101 8.57510 8.92912 9.39718 9.80398 10.79734 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.032337 B = 0.001626 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.675017 B =17211.297290 C =17303.259621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.120 4.120 3 C 0.098 3.902 4 N -0.484 5.484 5 C 0.091 3.909 6 C -0.157 4.157 7 C -0.025 4.025 8 C -0.106 4.106 9 C 0.514 3.486 10 O -0.526 6.526 11 N -0.730 5.730 12 C 0.121 3.879 13 C 0.045 3.955 14 N -0.515 5.515 15 C 0.017 3.983 16 C 0.045 3.955 17 C 0.452 3.548 18 O -0.557 6.557 19 N -0.590 5.590 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.133 0.867 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.400 0.600 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.079 0.921 41 H 0.016 0.984 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.090 0.910 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.162 11.966 26.065 31.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.122 4.122 3 C -0.059 4.059 4 N -0.192 5.192 5 C -0.065 4.065 6 C -0.177 4.177 7 C -0.033 4.033 8 C -0.146 4.146 9 C 0.299 3.701 10 O -0.401 6.401 11 N -0.382 5.382 12 C -0.002 4.002 13 C -0.084 4.084 14 N -0.239 5.239 15 C -0.131 4.131 16 C -0.087 4.087 17 C 0.237 3.763 18 O -0.439 6.439 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.138 0.862 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.172 0.828 32 H 0.172 0.828 33 H 0.151 0.849 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.233 0.767 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.035 0.965 42 H 0.117 0.883 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.108 0.892 46 H 0.203 0.797 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.683 14.083 24.381 31.305 hybrid contribution -0.687 -2.997 1.675 3.502 sum 12.995 11.086 26.056 31.156 Atomic orbital electron populations 1.20761 0.90253 1.03673 1.02323 1.20753 0.97538 0.93589 1.00335 1.22640 0.89915 0.97340 0.95981 1.67647 1.08367 1.31491 1.11682 1.22684 1.00323 0.87573 0.95943 1.21987 0.94297 0.99854 1.01518 1.19521 0.93528 0.93663 0.96593 1.20706 1.02569 0.95795 0.95515 1.20331 0.77944 0.81025 0.90799 1.90785 1.52588 1.50608 1.46101 1.45934 1.59384 1.22962 1.09959 1.21351 1.00200 0.96823 0.81861 1.22250 0.99590 0.95365 0.91193 1.61432 1.15877 1.37114 1.09505 1.22648 0.90295 0.99330 1.00812 1.21900 0.96913 0.92050 0.97831 1.19601 0.83596 0.83594 0.89490 1.90542 1.60437 1.45920 1.47013 1.42201 1.42213 1.27904 1.10688 1.19432 1.23900 1.14381 0.85657 0.86238 1.25042 0.97003 0.97561 0.96548 1.69622 1.31827 1.31835 1.18772 0.86670 0.79379 0.81431 0.81872 1.19604 1.20191 1.19586 0.90747 0.90794 0.91391 0.82811 0.82773 0.84907 0.87490 0.87308 0.76671 0.90145 0.91089 0.94524 0.90244 0.96513 0.88273 0.91693 0.93230 0.89182 0.79750 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.30 36.01 0.33 -0.40 16 2 C -0.12 -1.04 5.90 -104.48 -0.62 -1.65 16 3 C 0.10 0.91 10.86 -17.54 -0.19 0.72 16 4 N -0.48 -5.13 10.36 -13.25 -0.14 -5.27 16 5 C 0.09 0.81 11.18 -17.55 -0.20 0.61 16 6 C -0.16 -1.27 9.80 -39.44 -0.39 -1.65 16 7 C -0.02 -0.20 4.41 -104.32 -0.46 -0.67 16 8 C -0.11 -0.62 5.19 -29.04 -0.15 -0.77 16 9 C 0.51 4.81 7.13 -10.99 -0.08 4.73 16 10 O -0.53 -7.54 16.03 5.55 0.09 -7.45 16 11 N -0.73 -5.61 5.56 -60.30 -0.33 -5.94 16 12 C 0.12 1.29 5.60 -4.04 -0.02 1.26 16 13 C 0.04 0.46 5.07 -3.83 -0.02 0.44 16 14 N -0.52 -7.74 4.50 -244.37 -1.10 -8.84 16 15 C 0.02 0.26 8.96 60.07 0.54 0.79 16 16 C 0.04 0.70 5.45 -4.98 -0.03 0.68 16 17 C 0.45 9.97 7.48 -10.99 -0.08 9.89 16 18 O -0.56 -14.60 13.91 5.54 0.08 -14.52 16 19 N -0.59 -13.73 5.09 -10.96 -0.06 -13.78 16 20 C -0.31 -8.50 10.16 -14.93 -0.15 -8.65 16 21 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 22 C 0.04 1.12 5.50 -17.46 -0.10 1.03 16 23 N -0.88 -25.48 13.96 55.50 0.77 -24.71 16 24 Si 0.88 18.98 27.74 -169.99 -4.71 14.26 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.07 0.49 6.35 -51.93 -0.33 0.16 16 31 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.11 0.36 8.07 -51.93 -0.42 -0.06 16 35 H 0.11 0.39 7.12 -51.93 -0.37 0.03 16 36 H 0.40 1.71 8.47 -40.82 -0.35 1.36 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.85 6.55 -51.93 -0.34 0.51 16 39 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 40 H 0.08 0.70 7.93 -51.93 -0.41 0.29 16 41 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.10 1.88 5.82 -51.93 -0.30 1.58 16 43 H 0.06 0.90 6.47 -51.93 -0.34 0.56 16 44 H 0.05 0.69 8.12 -51.93 -0.42 0.26 16 45 H 0.09 1.21 7.93 -51.93 -0.41 0.79 16 46 H 0.37 7.49 5.76 -40.82 -0.24 7.25 16 47 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 388.98 15.07 5.86 5.86 Total: -1.00 -36.94 388.98 -8.00 -44.94 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -6.86 Total: 9.09 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -1.60 Total: 6.37 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.85 Total: -58.54 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.17 Total: -21.97 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.26 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.94 -8.00 -44.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492252046.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.833 kcal (2) G-P(sol) polarization free energy of solvation -36.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds