Wall clock time and date at job start Tue Mar 31 2020 19:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38221 * 120.41773 * 2 1 4 4 N 1.31862 * 120.76221 * 180.25125 * 3 2 1 5 5 C 1.31881 * 121.72315 * 0.04192 * 4 3 2 6 6 C 1.38185 * 120.76978 * 359.96041 * 5 4 3 7 7 C 1.38635 * 120.41887 * 180.27454 * 2 1 3 8 8 C 1.50701 * 120.78677 * 359.70635 * 7 2 1 9 9 C 1.50692 * 109.47149 * 85.00080 * 8 7 2 10 10 O 1.21287 * 120.00216 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00262 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00559 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47519 * 179.97438 * 12 11 9 14 14 N 1.46893 * 109.47444 * 180.02562 * 13 12 11 15 15 C 1.46911 * 111.00013 * 66.04861 * 14 13 12 16 16 C 1.46900 * 111.00322 * 189.99746 * 14 13 12 17 17 C 1.50700 * 109.47433 * 170.00025 * 16 14 13 18 18 O 1.21300 * 119.99560 * 0.02562 * 17 16 14 19 19 N 1.34773 * 120.00298 * 180.02562 * 17 16 14 20 20 C 1.37096 * 119.99931 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00505 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99968 * 179.97438 * 20 19 17 23 23 N 1.31415 * 120.00202 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99755 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47542 * 90.00106 * 24 22 20 26 26 H 1.48498 * 109.46789 * 210.00085 * 24 22 20 27 27 H 1.48497 * 109.46807 * 329.99725 * 24 22 20 28 28 H 1.08999 * 109.47245 * 269.72372 * 1 2 3 29 29 H 1.08991 * 109.46674 * 29.72400 * 1 2 3 30 30 H 1.09007 * 109.46846 * 149.72305 * 1 2 3 31 31 H 1.07993 * 119.62150 * 0.27487 * 3 2 1 32 32 H 1.08011 * 119.61586 * 179.97438 * 5 4 3 33 33 H 1.07998 * 120.41936 * 180.02562 * 6 5 4 34 34 H 1.09005 * 109.46822 * 205.00093 * 8 7 2 35 35 H 1.08995 * 109.47233 * 324.99475 * 8 7 2 36 36 H 0.97008 * 119.99915 * 0.02562 * 11 9 8 37 37 H 1.08992 * 109.47168 * 300.00180 * 12 11 9 38 38 H 1.09007 * 109.46777 * 60.00305 * 12 11 9 39 39 H 1.09005 * 109.47122 * 300.00576 * 13 12 11 40 40 H 1.09002 * 109.47208 * 60.00085 * 13 12 11 41 41 H 1.08994 * 109.46922 * 59.99944 * 15 14 13 42 42 H 1.08997 * 109.46933 * 180.02562 * 15 14 13 43 43 H 1.08996 * 109.46841 * 300.00173 * 15 14 13 44 44 H 1.09000 * 109.47579 * 290.00403 * 16 14 13 45 45 H 1.09003 * 109.46767 * 50.00339 * 16 14 13 46 46 H 0.96999 * 120.00088 * 359.97438 * 19 17 16 47 47 H 0.97000 * 120.00011 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0050 5 6 4.2256 0.0823 -0.0109 6 6 3.5948 -1.1471 -0.0113 7 6 2.2090 -1.1955 -0.0057 8 6 1.4831 -2.5162 -0.0054 9 6 1.1264 -2.8937 -1.4200 10 8 1.4311 -2.1620 -2.3381 11 7 0.4687 -4.0442 -1.6651 12 6 0.1214 -4.4110 -3.0402 13 6 -0.6142 -5.7525 -3.0401 14 7 -0.9619 -6.1205 -4.4190 15 6 0.2451 -6.3841 -5.2139 16 6 -1.8702 -7.2748 -4.4428 17 6 -2.3973 -7.4706 -5.8410 18 8 -2.0500 -6.7224 -6.7303 19 7 -3.2545 -8.4770 -6.1033 20 6 -3.7335 -8.6554 -7.3754 21 1 -3.4244 -7.9892 -8.1673 22 6 -4.6169 -9.6933 -7.6459 23 7 -5.0765 -9.8640 -8.8652 24 14 -5.1511 -10.8460 -6.2764 25 1 -6.3721 -10.3081 -5.6246 26 1 -5.4427 -12.1869 -6.8438 27 1 -4.0630 -10.9593 -5.2723 28 1 -0.3634 -0.0050 1.0276 29 1 -0.3632 0.8924 -0.5095 30 1 -0.3633 -0.8876 -0.5182 31 1 1.6675 2.1276 0.0045 32 1 5.3047 0.1285 -0.0153 33 1 4.1737 -2.0588 -0.0158 34 1 2.1263 -3.2841 0.4244 35 1 0.5731 -2.4305 0.5883 36 1 0.2247 -4.6293 -0.9308 37 1 -0.5222 -3.6433 -3.4695 38 1 1.0314 -4.4962 -3.6344 39 1 0.0298 -6.5201 -2.6109 40 1 -1.5241 -5.6678 -2.4459 41 1 0.8046 -7.2040 -4.7638 42 1 -0.0410 -6.6538 -6.2304 43 1 0.8673 -5.4894 -5.2372 44 1 -1.3304 -8.1685 -4.1295 45 1 -2.7028 -7.0960 -3.7624 46 1 -3.5319 -9.0756 -5.3922 47 1 -5.6929 -10.5888 -9.0541 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492252046.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:11 Heat of formation + Delta-G solvation = -56.851257 kcal Electronic energy + Delta-G solvation = -27338.405320 eV Core-core repulsion = 23327.204993 eV Total energy + Delta-G solvation = -4011.200327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.56755 -40.59500 -40.27971 -38.22217 -36.05490 -35.53353 -35.30473 -33.74053 -33.36099 -31.21442 -29.70381 -28.92696 -27.96964 -26.93634 -25.22330 -23.78860 -22.81840 -22.28124 -21.36519 -21.19593 -20.16315 -18.24029 -17.79298 -17.74081 -17.63449 -16.98397 -16.83888 -16.74149 -16.24250 -16.01707 -15.75164 -15.53220 -15.27643 -15.10648 -14.81641 -14.55795 -14.39718 -14.25628 -14.17094 -13.77951 -13.64565 -13.60038 -13.41907 -13.08756 -12.97869 -12.87597 -12.57145 -12.54647 -12.39285 -12.25744 -12.09623 -11.96106 -11.45591 -11.16566 -10.42975 -10.41075 -10.35234 -10.21773 -10.10926 -9.80305 -9.23404 -8.39475 -6.00535 0.21118 0.25977 1.31164 1.37722 1.46407 1.62207 1.98734 2.03642 2.25048 2.73957 2.91116 3.16430 3.30261 3.49700 3.61986 3.81146 3.84070 4.00692 4.02502 4.08076 4.09818 4.14434 4.36397 4.44165 4.45232 4.48752 4.51750 4.56458 4.62570 4.63732 4.75125 4.77626 4.87690 4.91100 4.98233 5.07440 5.19448 5.21437 5.38026 5.39381 5.54745 5.82006 5.88590 5.99984 6.16337 6.55986 6.62021 6.90993 7.04378 7.27290 7.42347 8.00835 8.78332 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.032337 B = 0.001626 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.675017 B =17211.297290 C =17303.259621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.130 4.130 3 C 0.077 3.923 4 N -0.514 5.514 5 C 0.073 3.927 6 C -0.161 4.161 7 C -0.039 4.039 8 C -0.096 4.096 9 C 0.513 3.487 10 O -0.583 6.583 11 N -0.711 5.711 12 C 0.128 3.872 13 C 0.054 3.946 14 N -0.544 5.544 15 C 0.024 3.976 16 C 0.058 3.942 17 C 0.448 3.552 18 O -0.608 6.608 19 N -0.591 5.591 20 C -0.328 4.328 21 H 0.052 0.948 22 C -0.017 4.017 23 N -0.937 5.937 24 Si 0.967 3.033 25 H -0.257 1.257 26 H -0.277 1.277 27 H -0.228 1.228 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.166 0.834 32 H 0.173 0.827 33 H 0.157 0.843 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.421 0.579 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.040 0.960 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.127 0.873 46 H 0.390 0.610 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.990 9.734 31.237 35.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.132 4.132 3 C -0.079 4.079 4 N -0.223 5.223 5 C -0.083 4.083 6 C -0.181 4.181 7 C -0.047 4.047 8 C -0.135 4.135 9 C 0.300 3.700 10 O -0.463 6.463 11 N -0.365 5.365 12 C 0.004 3.996 13 C -0.074 4.074 14 N -0.269 5.269 15 C -0.124 4.124 16 C -0.073 4.073 17 C 0.236 3.764 18 O -0.492 6.492 19 N -0.234 5.234 20 C -0.457 4.457 21 H 0.071 0.929 22 C -0.216 4.216 23 N -0.578 5.578 24 Si 0.787 3.213 25 H -0.181 1.181 26 H -0.203 1.203 27 H -0.151 1.151 28 H 0.116 0.884 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.183 0.817 32 H 0.190 0.810 33 H 0.174 0.826 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.259 0.741 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.145 0.855 46 H 0.226 0.774 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.518 11.837 29.623 34.646 hybrid contribution -0.554 -2.162 -0.034 2.232 sum 12.963 9.676 29.589 33.722 Atomic orbital electron populations 1.20784 0.88910 1.03333 1.03664 1.21047 0.98664 0.93641 0.99881 1.22954 0.89913 0.98479 0.96574 1.67629 1.09194 1.32683 1.12832 1.23095 1.01366 0.87751 0.96094 1.22310 0.94708 1.00416 1.00668 1.19906 0.93936 0.94743 0.96149 1.20768 1.04240 0.95266 0.93258 1.20964 0.76877 0.80479 0.91669 1.90774 1.54947 1.52423 1.48145 1.45708 1.58485 1.22880 1.09426 1.21069 0.98867 0.96530 0.83166 1.22260 1.01247 0.95260 0.88604 1.61292 1.15887 1.37240 1.12518 1.22454 0.90868 1.00378 0.98720 1.21833 0.98478 0.93894 0.93089 1.21004 0.81737 0.81721 0.91937 1.90537 1.61591 1.47441 1.49669 1.42014 1.42874 1.29127 1.09352 1.18989 1.25638 1.14454 0.86651 0.92945 1.26158 0.96109 0.99244 1.00060 1.69818 1.32790 1.33055 1.22093 0.85334 0.80283 0.77468 0.78215 1.18101 1.20271 1.15111 0.88423 0.90891 0.91957 0.81651 0.81021 0.82583 0.84124 0.84499 0.74107 0.93066 0.92938 0.91612 0.87740 0.94155 0.92964 0.91220 0.89829 0.85508 0.77415 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.30 71.24 0.66 -0.60 16 2 C -0.13 -2.13 5.90 -19.77 -0.12 -2.25 16 3 C 0.08 1.45 10.86 84.68 0.92 2.37 16 4 N -0.51 -11.10 10.36 -195.84 -2.03 -13.13 16 5 C 0.07 1.27 11.18 84.67 0.95 2.22 16 6 C -0.16 -2.38 9.80 22.36 0.22 -2.16 16 7 C -0.04 -0.58 4.41 -19.67 -0.09 -0.66 16 8 C -0.10 -0.78 5.19 29.10 0.15 -0.63 16 9 C 0.51 8.44 7.13 87.65 0.63 9.06 16 10 O -0.58 -16.56 16.03 -3.05 -0.05 -16.61 16 11 N -0.71 -8.56 5.56 -463.07 -2.57 -11.13 16 12 C 0.13 2.47 5.60 86.38 0.48 2.95 16 13 C 0.05 0.88 5.07 86.30 0.44 1.32 16 14 N -0.54 -15.03 4.50 -927.05 -4.17 -19.20 16 15 C 0.02 0.70 8.96 127.69 1.14 1.85 16 16 C 0.06 1.61 5.45 85.56 0.47 2.07 16 17 C 0.45 19.63 7.48 87.66 0.66 20.28 16 18 O -0.61 -33.38 13.91 -3.09 -0.04 -33.43 16 19 N -0.59 -27.11 5.09 -306.98 -1.56 -28.67 16 20 C -0.33 -19.06 10.16 84.04 0.85 -18.20 16 21 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 22 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 23 N -0.94 -56.36 13.96 21.66 0.30 -56.06 16 24 Si 0.97 37.76 27.74 68.60 1.90 39.66 16 25 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 26 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 27 H -0.23 -7.28 6.52 99.48 0.65 -6.64 16 28 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 30 H 0.06 0.79 6.35 -2.38 -0.02 0.77 16 31 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 32 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.14 0.23 8.07 -2.38 -0.02 0.21 16 35 H 0.14 0.37 7.12 -2.39 -0.02 0.35 16 36 H 0.42 1.46 8.47 -92.70 -0.79 0.67 16 37 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.21 6.55 -2.38 -0.02 1.20 16 39 H 0.07 0.77 8.12 -2.38 -0.02 0.75 16 40 H 0.10 1.24 7.93 -2.39 -0.02 1.22 16 41 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 42 H 0.05 2.05 5.82 -2.39 -0.01 2.04 16 43 H 0.07 1.94 6.47 -2.39 -0.02 1.92 16 44 H 0.08 1.83 8.12 -2.39 -0.02 1.81 16 45 H 0.13 2.66 7.93 -2.39 -0.02 2.64 16 46 H 0.39 14.46 5.76 -92.71 -0.53 13.93 16 47 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -91.10 388.98 -0.76 -91.86 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: -0.37 Total: 29.58 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 7.83 Total: 17.14 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -10.03 Total: -128.20 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -0.09 Total: -50.04 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 1.90 Total: 39.66 kcal Total: -91.10 -0.76 -91.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492252046.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.013 kcal (2) G-P(sol) polarization free energy of solvation -91.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds