Wall clock time and date at job start Tue Mar 31 2020 19:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38172 * 120.49609 * 2 1 4 4 N 1.31799 * 120.89270 * 180.02562 * 3 2 1 5 5 C 1.31831 * 122.04657 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.90120 * 0.02562 * 5 4 3 7 7 C 1.39794 * 120.50174 * 180.02562 * 2 1 3 8 8 C 1.48151 * 120.92200 * 0.02562 * 7 2 1 9 9 O 1.21520 * 120.00018 * 353.89927 * 8 7 2 10 10 N 1.34773 * 120.00194 * 173.90280 * 8 7 2 11 11 C 1.46493 * 120.00239 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47495 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.46757 * 305.00471 * 12 11 10 14 14 C 1.53008 * 109.46693 * 64.99773 * 12 11 10 15 15 C 1.52995 * 109.47547 * 184.99567 * 12 11 10 16 16 N 1.46896 * 109.47501 * 175.00047 * 15 12 11 17 17 C 1.46899 * 111.00570 * 180.02562 * 16 15 12 18 18 C 1.50697 * 109.47410 * 180.02562 * 17 16 15 19 19 O 1.21291 * 119.99731 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99928 * 179.97438 * 18 17 16 21 21 C 1.37098 * 120.00028 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99866 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00017 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00140 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99881 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47261 * 90.00134 * 25 23 21 27 27 H 1.48496 * 109.46895 * 210.00114 * 25 23 21 28 28 H 1.48504 * 109.46784 * 329.99724 * 25 23 21 29 29 H 1.09001 * 109.46982 * 263.64564 * 1 2 3 30 30 H 1.08993 * 109.47215 * 23.64814 * 1 2 3 31 31 H 1.09005 * 109.47120 * 143.65113 * 1 2 3 32 32 H 1.07996 * 119.55522 * 0.03793 * 3 2 1 33 33 H 1.08011 * 119.54848 * 179.97438 * 5 4 3 34 34 H 1.08003 * 120.49908 * 179.97438 * 6 5 4 35 35 H 0.96998 * 119.99972 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.47212 * 299.99548 * 11 10 8 37 37 H 1.09001 * 109.47688 * 59.99606 * 11 10 8 38 38 H 1.08994 * 109.47340 * 60.00525 * 14 12 11 39 39 H 1.08997 * 109.46995 * 180.02562 * 14 12 11 40 40 H 1.08998 * 109.46991 * 300.00084 * 14 12 11 41 41 H 1.08999 * 109.47701 * 295.00362 * 15 12 11 42 42 H 1.09008 * 109.46946 * 54.99859 * 15 12 11 43 43 H 1.00906 * 110.99949 * 56.04353 * 16 15 12 44 44 H 1.09004 * 109.46732 * 300.00133 * 17 16 15 45 45 H 1.09000 * 109.47286 * 59.99584 * 17 16 15 46 46 H 0.96997 * 119.99879 * 359.97438 * 20 18 17 47 47 H 0.97003 * 119.99902 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5262 1.1997 -0.0005 5 6 4.2334 0.0871 -0.0005 6 6 3.6137 -1.1473 -0.0006 7 6 2.2166 -1.2045 -0.0005 8 6 1.5079 -2.5055 -0.0017 9 8 0.2983 -2.5387 0.1097 10 7 2.2048 -3.6524 -0.1262 11 6 1.5040 -4.9388 -0.1279 12 6 2.5197 -6.0727 -0.2820 13 1 3.1201 -5.9036 -1.1758 14 6 3.4321 -6.1104 0.9457 15 6 1.7802 -7.4061 -0.4088 16 7 2.7473 -8.4790 -0.6763 17 6 2.0716 -9.7769 -0.8051 18 6 3.0935 -10.8504 -1.0778 19 8 4.2691 -10.5626 -1.1566 20 7 2.7012 -12.1304 -1.2331 21 6 3.6309 -13.1071 -1.4806 22 1 4.6777 -12.8507 -1.5516 23 6 3.2264 -14.4267 -1.6412 24 7 1.9527 -14.7385 -1.5554 25 14 4.4931 -15.7573 -1.9793 26 1 4.9735 -16.3219 -0.6925 27 1 3.8741 -16.8349 -2.7922 28 1 5.6387 -15.1730 -2.7219 29 1 -0.3633 -0.1137 1.0214 30 1 -0.3633 0.9413 -0.4122 31 1 -0.3633 -0.8277 -0.6091 32 1 1.6691 2.1263 0.0006 33 1 5.3121 0.1417 -0.0014 34 1 4.1995 -2.0547 -0.0010 35 1 3.1703 -3.6259 -0.2154 36 1 0.9639 -5.0596 0.8111 37 1 0.7991 -4.9676 -0.9587 38 1 2.8318 -6.2794 1.8396 39 1 4.1559 -6.9179 0.8358 40 1 3.9589 -5.1605 1.0361 41 1 1.2505 -7.6177 0.5200 42 1 1.0653 -7.3484 -1.2297 43 1 3.4590 -8.5107 0.0384 44 1 1.5437 -10.0051 0.1209 45 1 1.3590 -9.7355 -1.6288 46 1 1.7611 -12.3607 -1.1689 47 1 1.6704 -15.6598 -1.6671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495659856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:02 Heat of formation + Delta-G solvation = -69.329904 kcal Electronic energy + Delta-G solvation = -27036.927395 eV Core-core repulsion = 23025.185952 eV Total energy + Delta-G solvation = -4011.741442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.80346 -40.28434 -40.08677 -38.35714 -36.26991 -35.75041 -34.42338 -33.89345 -33.24809 -32.54943 -28.91839 -28.52512 -27.69290 -26.62859 -25.54920 -24.34124 -23.09471 -21.90008 -21.35041 -20.97048 -19.91691 -19.06863 -18.02369 -17.73626 -17.15902 -16.78252 -16.54248 -16.43035 -16.40296 -16.22650 -15.90778 -15.66621 -15.33510 -15.08638 -14.82916 -14.50546 -14.35513 -14.30870 -13.94044 -13.69253 -13.57131 -13.45953 -13.42673 -13.23081 -13.06890 -12.79195 -12.53649 -12.41925 -12.13079 -12.06981 -11.85264 -11.76628 -11.50443 -11.31255 -10.93424 -10.39395 -10.33828 -10.17396 -10.01644 -9.92790 -9.32264 -8.46675 -5.95603 -0.35323 0.06278 1.38347 1.42333 1.55061 1.79105 1.95602 2.05235 2.29588 2.79186 2.94332 3.20731 3.45566 3.50246 3.53549 3.74204 3.81296 3.89738 3.91917 3.95928 3.99578 4.33099 4.41262 4.47294 4.52241 4.56553 4.58289 4.60360 4.70374 4.76289 4.78493 4.79865 4.82945 4.94408 5.00046 5.07781 5.18894 5.31711 5.37797 5.40993 5.44814 5.61847 5.88654 6.10071 6.37980 6.43246 6.59937 6.89182 7.05353 7.12452 7.56235 8.11210 8.70619 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.034274 B = 0.001513 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.742016 B =18507.682207 C =19133.438335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C 0.088 3.912 4 N -0.488 5.488 5 C 0.082 3.918 6 C -0.129 4.129 7 C -0.111 4.111 8 C 0.554 3.446 9 O -0.557 6.557 10 N -0.707 5.707 11 C 0.132 3.868 12 C -0.089 4.089 13 H 0.087 0.913 14 C -0.152 4.152 15 C 0.066 3.934 16 N -0.681 5.681 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.182 0.818 33 H 0.189 0.811 34 H 0.168 0.832 35 H 0.413 0.587 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.042 0.958 42 H 0.080 0.920 43 H 0.345 0.655 44 H 0.066 0.934 45 H 0.104 0.896 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.039 28.948 5.155 29.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.069 4.069 4 N -0.197 5.197 5 C -0.074 4.074 6 C -0.149 4.149 7 C -0.122 4.122 8 C 0.341 3.659 9 O -0.437 6.437 10 N -0.359 5.359 11 C 0.008 3.992 12 C -0.109 4.109 13 H 0.105 0.895 14 C -0.209 4.209 15 C -0.064 4.064 16 N -0.315 5.315 17 C -0.069 4.069 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.465 4.465 22 H 0.098 0.902 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.199 0.801 33 H 0.206 0.794 34 H 0.185 0.815 35 H 0.251 0.749 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.165 0.835 44 H 0.084 0.916 45 H 0.122 0.878 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.765 29.788 4.484 30.175 hybrid contribution -0.247 -2.096 0.698 2.222 sum -2.012 27.692 5.182 28.245 Atomic orbital electron populations 1.20911 0.88873 1.03783 1.03295 1.21295 0.98766 0.92840 0.96372 1.23082 0.89711 0.98037 0.96044 1.67606 1.08815 1.32908 1.10390 1.23250 1.01953 0.86839 0.95378 1.22634 0.93044 1.01458 0.97781 1.20306 0.94805 0.93245 1.03832 1.18389 0.86678 0.84300 0.76485 1.90745 1.14860 1.87528 1.50545 1.45802 1.11693 1.05215 1.73220 1.21304 0.94529 0.80925 1.02403 1.21219 0.96585 0.92610 1.00439 0.89464 1.21897 0.99473 1.02688 0.96836 1.21966 0.93966 0.89788 1.00649 1.60081 1.14770 1.02565 1.54059 1.21536 0.94634 0.88179 1.02532 1.20889 0.90168 0.83948 0.82529 1.90483 1.20528 1.82454 1.57483 1.41939 1.10085 1.05972 1.63053 1.19684 0.91166 0.87891 1.47761 0.90245 1.26040 0.98838 0.99842 0.96513 1.69673 1.15671 1.20870 1.49885 0.84921 0.77655 0.77189 0.78528 1.19590 1.19610 1.19777 0.90827 0.89656 0.90698 0.80109 0.79419 0.81503 0.74890 0.91311 0.91452 0.92400 0.92776 0.90841 0.94015 0.90203 0.83466 0.91620 0.87835 0.76980 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 8.84 71.24 0.63 -1.02 16 2 C -0.09 -1.40 5.93 -19.50 -0.12 -1.51 16 3 C 0.09 1.22 10.83 84.68 0.92 2.14 16 4 N -0.49 -7.52 10.34 -196.00 -2.03 -9.55 16 5 C 0.08 0.91 11.17 84.67 0.95 1.86 16 6 C -0.13 -1.33 9.60 22.63 0.22 -1.11 16 7 C -0.11 -1.72 5.91 -19.88 -0.12 -1.84 16 8 C 0.55 10.16 7.74 86.88 0.67 10.84 16 9 O -0.56 -13.78 13.53 -3.78 -0.05 -13.83 16 10 N -0.71 -9.63 5.24 -465.68 -2.44 -12.07 16 11 C 0.13 2.03 5.06 86.38 0.44 2.46 16 12 C -0.09 -1.41 2.63 -10.79 -0.03 -1.44 16 13 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 14 C -0.15 -2.23 8.84 71.98 0.64 -1.59 16 15 C 0.07 1.33 5.14 86.30 0.44 1.78 16 16 N -0.68 -19.89 6.12 -517.94 -3.17 -23.06 16 17 C 0.06 2.10 6.17 85.56 0.53 2.63 16 18 C 0.44 20.48 7.82 87.66 0.69 21.16 16 19 O -0.62 -33.96 15.78 -3.06 -0.05 -34.01 16 20 N -0.57 -29.18 5.29 -306.99 -1.62 -30.81 16 21 C -0.34 -18.96 9.68 84.04 0.81 -18.15 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 24 N -0.92 -49.37 13.05 21.66 0.28 -49.09 16 25 Si 0.99 42.60 29.55 68.60 2.03 44.62 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 28 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.08 0.83 8.05 -2.39 -0.02 0.81 16 31 H 0.07 1.45 5.95 -2.38 -0.01 1.44 16 32 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.19 0.94 8.06 -2.90 -0.02 0.92 16 34 H 0.17 0.64 6.58 -2.91 -0.02 0.62 16 35 H 0.41 3.50 5.83 -92.71 -0.54 2.96 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 39 H 0.05 0.99 6.68 -2.39 -0.02 0.97 16 40 H 0.07 0.77 7.18 -2.39 -0.02 0.75 16 41 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.35 10.53 6.68 -89.69 -0.60 9.93 16 44 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 46 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 47 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -73.77 390.82 -0.77 -74.54 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: -0.85 Total: 37.25 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 7.13 Total: 16.00 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -8.98 Total: -124.57 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -0.10 Total: -47.85 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -73.77 -0.77 -74.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495659856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.211 kcal (2) G-P(sol) polarization free energy of solvation -73.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds