Wall clock time and date at job start Tue Mar 31 2020 19:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38177 * 120.49866 * 2 1 4 4 N 1.31794 * 120.89927 * 180.02562 * 3 2 1 5 5 C 1.31829 * 122.04743 * 359.97438 * 4 3 2 6 6 C 1.38134 * 120.89601 * 0.02562 * 5 4 3 7 7 C 1.39792 * 120.50534 * 180.02562 * 2 1 3 8 8 C 1.48151 * 120.92084 * 0.02562 * 7 2 1 9 9 O 1.21516 * 120.00111 * 311.33993 * 8 7 2 10 10 N 1.34776 * 119.99886 * 131.33978 * 8 7 2 11 11 C 1.46497 * 120.00527 * 4.33928 * 10 8 7 12 12 C 1.46507 * 119.99657 * 184.33607 * 10 8 7 13 13 C 1.53000 * 109.47161 * 90.00384 * 12 10 8 14 14 C 1.52995 * 109.47047 * 179.97438 * 13 12 10 15 15 N 1.46906 * 109.47222 * 179.97438 * 14 13 12 16 16 C 1.46890 * 110.99963 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47017 * 180.02562 * 16 15 14 18 18 O 1.21297 * 119.99989 * 359.97438 * 17 16 15 19 19 N 1.34780 * 120.00152 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99930 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00120 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99889 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99893 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99965 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47269 * 89.99648 * 24 22 20 26 26 H 1.48501 * 109.47202 * 209.99856 * 24 22 20 27 27 H 1.48504 * 109.47230 * 329.99901 * 24 22 20 28 28 H 1.08995 * 109.47121 * 274.29195 * 1 2 3 29 29 H 1.08994 * 109.47737 * 34.30022 * 1 2 3 30 30 H 1.09001 * 109.46869 * 154.29616 * 1 2 3 31 31 H 1.08003 * 119.54584 * 0.04311 * 3 2 1 32 32 H 1.07999 * 119.55117 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.49588 * 179.97438 * 6 5 4 34 34 H 1.08993 * 109.47455 * 84.96712 * 11 10 8 35 35 H 1.09000 * 109.47309 * 204.97631 * 11 10 8 36 36 H 1.09005 * 109.46810 * 324.97082 * 11 10 8 37 37 H 1.09002 * 109.46946 * 209.99808 * 12 10 8 38 38 H 1.08996 * 109.47224 * 329.99670 * 12 10 8 39 39 H 1.09002 * 109.46721 * 299.99562 * 13 12 10 40 40 H 1.09002 * 109.47353 * 59.99263 * 13 12 10 41 41 H 1.09002 * 109.47082 * 299.99439 * 14 13 12 42 42 H 1.08997 * 109.47683 * 59.99960 * 14 13 12 43 43 H 1.00903 * 110.99699 * 56.04448 * 15 14 13 44 44 H 1.08998 * 109.47798 * 299.99921 * 16 15 14 45 45 H 1.08999 * 109.47573 * 60.00484 * 16 15 14 46 46 H 0.96996 * 120.00260 * 359.97438 * 19 17 16 47 47 H 0.97000 * 119.99802 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5261 1.1998 -0.0005 5 6 4.2334 0.0873 -0.0005 6 6 3.6137 -1.1472 -0.0006 7 6 2.2166 -1.2044 -0.0005 8 6 1.5080 -2.5055 -0.0017 9 8 0.6066 -2.7072 0.7879 10 7 1.8631 -3.4654 -0.8785 11 6 3.0104 -3.2591 -1.7658 12 6 1.1016 -4.7153 -0.9444 13 6 -0.0346 -4.5676 -1.9583 14 6 -0.8293 -5.8731 -2.0275 15 7 -1.9207 -5.7311 -3.0006 16 6 -2.7067 -6.9684 -3.0943 17 6 -3.8139 -6.7852 -4.1001 18 8 -3.9364 -5.7276 -4.6813 19 7 -4.6687 -7.7961 -4.3531 20 6 -5.6762 -7.6291 -5.2678 21 1 -5.7852 -6.6875 -5.7853 22 6 -6.5578 -8.6712 -5.5282 23 7 -6.4254 -9.8168 -4.8982 24 14 -7.9301 -8.4440 -6.7750 25 1 -7.4478 -8.8457 -8.1208 26 1 -9.0908 -9.2879 -6.3929 27 1 -8.3429 -7.0178 -6.8025 28 1 -0.3633 0.0769 1.0247 29 1 -0.3634 0.8489 -0.5791 30 1 -0.3633 -0.9260 -0.4457 31 1 1.6689 2.1263 0.0007 32 1 5.3120 0.1419 -0.0005 33 1 4.1995 -2.0545 -0.0010 34 1 3.9265 -3.5402 -1.2464 35 1 2.8951 -3.8745 -2.6580 36 1 3.0632 -2.2090 -2.0531 37 1 1.7609 -5.5266 -1.2532 38 1 0.6854 -4.9394 0.0378 39 1 -0.6939 -3.7564 -1.6494 40 1 0.3817 -4.3435 -2.9405 41 1 -0.1698 -6.6840 -2.3366 42 1 -1.2457 -6.0976 -1.0455 43 1 -1.5655 -5.4592 -3.9051 44 1 -2.0602 -7.7866 -3.4114 45 1 -3.1357 -7.2011 -2.1197 46 1 -4.5710 -8.6417 -3.8881 47 1 -7.0410 -10.5441 -5.0797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569201236.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:23 Heat of formation + Delta-G solvation = -33.567604 kcal Electronic energy + Delta-G solvation = -27383.879546 eV Core-core repulsion = 23373.688874 eV Total energy + Delta-G solvation = -4010.190673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.27407 -39.57683 -38.30269 -36.72587 -35.56445 -33.99533 -33.86468 -32.90650 -31.53366 -31.13179 -27.99827 -27.76439 -26.88819 -25.47077 -24.30592 -23.32892 -22.54711 -21.60000 -20.10027 -19.20869 -18.07119 -17.87761 -17.34480 -16.57761 -16.32069 -15.94846 -15.69475 -15.55735 -15.30824 -14.65998 -14.60624 -14.34737 -14.23700 -13.91622 -13.81570 -13.63521 -13.51258 -13.37978 -13.15346 -12.93429 -12.58490 -12.50669 -12.13429 -11.99874 -11.89838 -11.73488 -11.48362 -11.39463 -11.04958 -10.81493 -10.66748 -10.39004 -10.21449 -10.19450 -9.79010 -9.50595 -9.40439 -9.11709 -8.45878 -8.05395 -7.95364 -6.41307 -3.82084 0.40166 0.59720 2.23236 2.52326 3.18092 3.26707 3.29443 3.32991 3.84775 3.91460 3.96034 4.10133 4.28187 4.32934 4.35115 4.50253 4.61807 4.72647 4.81884 4.93225 5.03650 5.09008 5.11872 5.18393 5.20971 5.24288 5.26470 5.33757 5.34981 5.37378 5.42810 5.62863 5.66728 5.78728 5.83673 5.95660 5.99698 6.02782 6.14202 6.21329 6.28475 6.85425 7.22280 7.44969 7.55651 7.66151 7.67409 8.06908 8.61896 9.18338 9.54856 10.06428 10.76451 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.001662 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.918924 B =16838.463991 C =17385.525473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C 0.098 3.902 4 N -0.470 5.470 5 C 0.087 3.913 6 C -0.142 4.142 7 C -0.085 4.085 8 C 0.560 3.440 9 O -0.516 6.516 10 N -0.608 5.608 11 C 0.073 3.927 12 C 0.116 3.884 13 C -0.132 4.132 14 C 0.063 3.937 15 N -0.669 5.669 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.142 0.858 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.027 0.973 42 H 0.073 0.927 43 H 0.348 0.652 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.162 13.580 10.542 29.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.088 4.088 3 C -0.060 4.060 4 N -0.178 5.178 5 C -0.069 4.069 6 C -0.162 4.162 7 C -0.096 4.096 8 C 0.347 3.653 9 O -0.391 6.391 10 N -0.341 5.341 11 C -0.070 4.070 12 C -0.007 4.007 13 C -0.171 4.171 14 C -0.067 4.067 15 N -0.301 5.301 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.180 0.820 32 H 0.178 0.822 33 H 0.159 0.841 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.045 0.955 42 H 0.091 0.909 43 H 0.167 0.833 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.226 0.774 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 23.486 15.070 10.998 29.994 hybrid contribution -0.324 -2.019 -0.877 2.225 sum 23.162 13.051 10.121 28.447 Atomic orbital electron populations 1.20833 0.89091 1.03769 1.03608 1.21060 0.98236 0.92485 0.96979 1.22723 0.89728 0.97409 0.96092 1.67558 1.08282 1.31800 1.10164 1.22723 1.00549 0.87189 0.96426 1.22406 0.93597 1.00388 0.99803 1.20223 0.94110 0.93734 1.01501 1.18254 0.82919 0.83326 0.80813 1.90832 1.29849 1.80113 1.38356 1.47756 1.31373 1.17428 1.37531 1.22012 0.87785 1.02962 0.94224 1.21548 0.93387 0.84276 1.01456 1.21897 0.96789 0.99261 0.99115 1.21850 0.91901 0.95388 0.97563 1.60038 1.24013 1.32618 1.13479 1.21669 0.95455 0.90868 1.00177 1.19824 0.85433 0.85472 0.86675 1.90521 1.75032 1.27210 1.54013 1.41864 1.26763 1.13518 1.37913 1.19711 1.05559 1.00563 1.17077 0.87923 1.25268 0.99161 0.94925 0.98623 1.69615 1.38729 1.03527 1.42458 0.85849 0.79898 0.78480 0.80010 1.20445 1.20912 1.19403 0.89792 0.90717 0.90680 0.82002 0.82160 0.84056 0.92142 0.90264 0.90945 0.90140 0.89234 0.90465 0.91838 0.95515 0.90851 0.83288 0.93906 0.89552 0.77449 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.25 36.00 0.33 -0.67 16 2 C -0.08 -0.75 5.93 -104.07 -0.62 -1.37 16 3 C 0.10 0.79 10.87 -17.59 -0.19 0.60 16 4 N -0.47 -4.08 10.33 -13.30 -0.14 -4.22 16 5 C 0.09 0.58 11.17 -17.59 -0.20 0.39 16 6 C -0.14 -0.93 7.90 -39.02 -0.31 -1.24 16 7 C -0.08 -0.76 4.92 -104.65 -0.51 -1.28 16 8 C 0.56 5.98 6.42 -12.19 -0.08 5.90 16 9 O -0.52 -7.31 15.25 5.35 0.08 -7.23 16 10 N -0.61 -5.12 2.87 -182.58 -0.52 -5.64 16 11 C 0.07 0.37 9.08 59.85 0.54 0.92 16 12 C 0.12 1.00 5.42 -4.04 -0.02 0.98 16 13 C -0.13 -1.40 5.80 -26.73 -0.16 -1.55 16 14 C 0.06 0.76 5.69 -3.82 -0.02 0.74 16 15 N -0.67 -11.01 6.13 -115.06 -0.70 -11.72 16 16 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 17 C 0.44 10.58 7.82 -10.98 -0.09 10.49 16 18 O -0.58 -16.13 15.78 5.54 0.09 -16.04 16 19 N -0.56 -14.47 5.29 -10.96 -0.06 -14.53 16 20 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 23 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 24 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 30 H 0.07 0.80 6.58 -51.93 -0.34 0.46 16 31 H 0.16 0.91 8.06 -52.48 -0.42 0.48 16 32 H 0.16 0.60 8.06 -52.49 -0.42 0.17 16 33 H 0.14 0.59 6.38 -52.49 -0.33 0.25 16 34 H 0.06 0.20 7.11 -51.93 -0.37 -0.17 16 35 H 0.08 0.34 8.03 -51.93 -0.42 -0.08 16 36 H 0.07 0.37 6.28 -51.93 -0.33 0.05 16 37 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 38 H 0.09 0.90 7.37 -51.93 -0.38 0.52 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.35 5.83 8.43 -39.29 -0.33 5.50 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 46 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 394.03 15.07 5.94 5.94 Total: -1.00 -35.18 394.03 -8.18 -43.36 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -6.98 Total: 11.17 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -1.59 Total: 6.69 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.70 Total: -60.05 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.17 Total: -23.27 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.18 -8.18 -43.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569201236.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.797 kcal (2) G-P(sol) polarization free energy of solvation -35.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds