Wall clock time and date at job start Tue Mar 31 2020 19:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38177 * 120.49866 * 2 1 4 4 N 1.31794 * 120.89927 * 180.02562 * 3 2 1 5 5 C 1.31829 * 122.04743 * 359.97438 * 4 3 2 6 6 C 1.38134 * 120.89601 * 0.02562 * 5 4 3 7 7 C 1.39792 * 120.50534 * 180.02562 * 2 1 3 8 8 C 1.48151 * 120.92084 * 0.02562 * 7 2 1 9 9 O 1.21516 * 120.00111 * 311.33993 * 8 7 2 10 10 N 1.34776 * 119.99886 * 131.33978 * 8 7 2 11 11 C 1.46497 * 120.00527 * 4.33928 * 10 8 7 12 12 C 1.46507 * 119.99657 * 184.33607 * 10 8 7 13 13 C 1.53000 * 109.47161 * 90.00384 * 12 10 8 14 14 C 1.52995 * 109.47047 * 179.97438 * 13 12 10 15 15 N 1.46906 * 109.47222 * 179.97438 * 14 13 12 16 16 C 1.46890 * 110.99963 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47017 * 180.02562 * 16 15 14 18 18 O 1.21297 * 119.99989 * 359.97438 * 17 16 15 19 19 N 1.34780 * 120.00152 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99930 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00120 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99889 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99893 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99965 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47269 * 89.99648 * 24 22 20 26 26 H 1.48501 * 109.47202 * 209.99856 * 24 22 20 27 27 H 1.48504 * 109.47230 * 329.99901 * 24 22 20 28 28 H 1.08995 * 109.47121 * 274.29195 * 1 2 3 29 29 H 1.08994 * 109.47737 * 34.30022 * 1 2 3 30 30 H 1.09001 * 109.46869 * 154.29616 * 1 2 3 31 31 H 1.08003 * 119.54584 * 0.04311 * 3 2 1 32 32 H 1.07999 * 119.55117 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.49588 * 179.97438 * 6 5 4 34 34 H 1.08993 * 109.47455 * 84.96712 * 11 10 8 35 35 H 1.09000 * 109.47309 * 204.97631 * 11 10 8 36 36 H 1.09005 * 109.46810 * 324.97082 * 11 10 8 37 37 H 1.09002 * 109.46946 * 209.99808 * 12 10 8 38 38 H 1.08996 * 109.47224 * 329.99670 * 12 10 8 39 39 H 1.09002 * 109.46721 * 299.99562 * 13 12 10 40 40 H 1.09002 * 109.47353 * 59.99263 * 13 12 10 41 41 H 1.09002 * 109.47082 * 299.99439 * 14 13 12 42 42 H 1.08997 * 109.47683 * 59.99960 * 14 13 12 43 43 H 1.00903 * 110.99699 * 56.04448 * 15 14 13 44 44 H 1.08998 * 109.47798 * 299.99921 * 16 15 14 45 45 H 1.08999 * 109.47573 * 60.00484 * 16 15 14 46 46 H 0.96996 * 120.00260 * 359.97438 * 19 17 16 47 47 H 0.97000 * 119.99802 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5261 1.1998 -0.0005 5 6 4.2334 0.0873 -0.0005 6 6 3.6137 -1.1472 -0.0006 7 6 2.2166 -1.2044 -0.0005 8 6 1.5080 -2.5055 -0.0017 9 8 0.6066 -2.7072 0.7879 10 7 1.8631 -3.4654 -0.8785 11 6 3.0104 -3.2591 -1.7658 12 6 1.1016 -4.7153 -0.9444 13 6 -0.0346 -4.5676 -1.9583 14 6 -0.8293 -5.8731 -2.0275 15 7 -1.9207 -5.7311 -3.0006 16 6 -2.7067 -6.9684 -3.0943 17 6 -3.8139 -6.7852 -4.1001 18 8 -3.9364 -5.7276 -4.6813 19 7 -4.6687 -7.7961 -4.3531 20 6 -5.6762 -7.6291 -5.2678 21 1 -5.7852 -6.6875 -5.7853 22 6 -6.5578 -8.6712 -5.5282 23 7 -6.4254 -9.8168 -4.8982 24 14 -7.9301 -8.4440 -6.7750 25 1 -7.4478 -8.8457 -8.1208 26 1 -9.0908 -9.2879 -6.3929 27 1 -8.3429 -7.0178 -6.8025 28 1 -0.3633 0.0769 1.0247 29 1 -0.3634 0.8489 -0.5791 30 1 -0.3633 -0.9260 -0.4457 31 1 1.6689 2.1263 0.0007 32 1 5.3120 0.1419 -0.0005 33 1 4.1995 -2.0545 -0.0010 34 1 3.9265 -3.5402 -1.2464 35 1 2.8951 -3.8745 -2.6580 36 1 3.0632 -2.2090 -2.0531 37 1 1.7609 -5.5266 -1.2532 38 1 0.6854 -4.9394 0.0378 39 1 -0.6939 -3.7564 -1.6494 40 1 0.3817 -4.3435 -2.9405 41 1 -0.1698 -6.6840 -2.3366 42 1 -1.2457 -6.0976 -1.0455 43 1 -1.5655 -5.4592 -3.9051 44 1 -2.0602 -7.7866 -3.4114 45 1 -3.1357 -7.2011 -2.1197 46 1 -4.5710 -8.6417 -3.8881 47 1 -7.0410 -10.5441 -5.0797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569201236.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:22 Heat of formation + Delta-G solvation = -59.873710 kcal Electronic energy + Delta-G solvation = -27385.020265 eV Core-core repulsion = 23373.688874 eV Total energy + Delta-G solvation = -4011.331391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.92028 -40.29036 -40.13918 -37.72132 -36.63240 -35.87934 -34.61533 -33.67967 -33.26990 -32.30841 -28.98413 -28.48222 -27.74858 -26.77876 -25.52482 -24.32984 -23.23551 -22.51834 -21.11510 -20.72702 -19.91807 -18.70742 -18.08086 -17.78618 -17.30026 -17.13880 -16.59859 -16.45964 -16.28574 -16.06216 -15.83874 -15.57912 -15.27140 -15.05093 -14.95321 -14.51466 -14.38637 -14.20854 -14.14386 -13.76771 -13.56930 -13.43019 -13.28614 -13.18192 -12.96771 -12.90697 -12.75360 -12.56542 -12.46321 -12.42524 -12.12940 -11.71677 -11.52147 -11.44929 -10.80678 -10.43072 -10.38018 -10.03327 -9.97367 -9.79202 -9.33553 -8.48047 -5.97064 -0.22352 0.05183 1.37202 1.41109 1.48033 1.54136 1.87367 2.03035 2.28453 2.72192 2.91856 3.19008 3.24756 3.47895 3.51790 3.76207 3.77135 3.93683 3.95082 4.07794 4.20542 4.26576 4.35074 4.37501 4.41898 4.47730 4.54081 4.56348 4.60507 4.62820 4.64065 4.74757 4.77163 4.81134 4.87921 5.04773 5.11673 5.16800 5.18157 5.39554 5.45459 5.60480 5.87802 6.09519 6.18385 6.39864 6.58529 6.89630 6.93205 7.10885 7.54189 8.09602 8.69279 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.001662 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.918924 B =16838.463991 C =17385.525473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.102 4.102 3 C 0.094 3.906 4 N -0.490 5.490 5 C 0.089 3.911 6 C -0.130 4.130 7 C -0.101 4.101 8 C 0.554 3.446 9 O -0.564 6.564 10 N -0.604 5.604 11 C 0.066 3.934 12 C 0.120 3.880 13 C -0.121 4.121 14 C 0.066 3.934 15 N -0.690 5.690 16 C 0.066 3.934 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.572 5.572 20 C -0.336 4.336 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.994 3.006 25 H -0.269 1.269 26 H -0.270 1.270 27 H -0.274 1.274 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.180 0.820 32 H 0.193 0.807 33 H 0.169 0.831 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.072 0.928 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.344 0.656 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.397 0.603 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.445 12.906 10.274 31.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.105 4.105 3 C -0.063 4.063 4 N -0.199 5.199 5 C -0.068 4.068 6 C -0.150 4.150 7 C -0.113 4.113 8 C 0.343 3.657 9 O -0.443 6.443 10 N -0.335 5.335 11 C -0.076 4.076 12 C -0.003 4.003 13 C -0.160 4.160 14 C -0.063 4.063 15 N -0.323 5.323 16 C -0.066 4.066 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.209 5.209 20 C -0.466 4.466 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.560 5.560 24 Si 0.818 3.182 25 H -0.194 1.194 26 H -0.195 1.195 27 H -0.199 1.199 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.197 0.803 32 H 0.210 0.790 33 H 0.187 0.813 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.133 0.867 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.163 0.837 44 H 0.089 0.911 45 H 0.119 0.881 46 H 0.231 0.769 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 25.812 14.372 10.730 31.432 hybrid contribution -0.952 -1.797 -0.790 2.182 sum 24.861 12.574 9.940 29.580 Atomic orbital electron populations 1.20751 0.89650 1.03075 1.03307 1.21138 0.98100 0.93124 0.98136 1.22961 0.89838 0.97720 0.95759 1.67617 1.08486 1.32935 1.10847 1.23291 1.01960 0.86595 0.94913 1.22660 0.92464 1.01607 0.98298 1.20286 0.95354 0.92876 1.02736 1.18601 0.82414 0.84151 0.80573 1.90798 1.32003 1.81029 1.40508 1.47867 1.31791 1.16733 1.37122 1.22285 0.87402 1.03421 0.94459 1.21510 0.93433 0.85397 0.99957 1.21770 0.96745 0.97422 1.00038 1.21906 0.91214 0.96899 0.96261 1.60023 1.25973 1.32213 1.14072 1.21524 0.93972 0.92487 0.98661 1.20922 0.85873 0.84233 0.86660 1.90488 1.76230 1.28753 1.55733 1.41930 1.26904 1.14188 1.37907 1.19677 1.07687 1.00365 1.18855 0.90387 1.26057 1.00814 0.94338 1.00041 1.69672 1.39419 1.03911 1.42991 0.84913 0.77225 0.78179 0.77919 1.19447 1.19473 1.19932 0.90383 0.88914 0.93324 0.80315 0.78988 0.81333 0.89410 0.88926 0.91000 0.86724 0.90907 0.93900 0.91015 0.92683 0.90963 0.83696 0.91055 0.88077 0.76902 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 9.25 71.23 0.66 -1.41 16 2 C -0.10 -1.85 5.93 -19.50 -0.12 -1.96 16 3 C 0.09 1.46 10.87 84.68 0.92 2.38 16 4 N -0.49 -7.81 10.33 -196.00 -2.03 -9.83 16 5 C 0.09 0.96 11.17 84.67 0.95 1.91 16 6 C -0.13 -1.43 7.90 22.63 0.18 -1.25 16 7 C -0.10 -1.79 4.92 -19.88 -0.10 -1.89 16 8 C 0.55 11.98 6.42 86.88 0.56 12.53 16 9 O -0.56 -16.95 15.25 -3.76 -0.06 -17.00 16 10 N -0.60 -9.42 2.87 -849.85 -2.44 -11.86 16 11 C 0.07 0.49 9.08 127.77 1.16 1.65 16 12 C 0.12 1.91 5.42 86.38 0.47 2.37 16 13 C -0.12 -2.49 5.80 30.59 0.18 -2.31 16 14 C 0.07 1.50 5.69 86.30 0.49 1.99 16 15 N -0.69 -22.29 6.13 -517.95 -3.17 -25.46 16 16 C 0.07 2.29 6.17 85.56 0.53 2.82 16 17 C 0.44 21.17 7.82 87.66 0.69 21.86 16 18 O -0.63 -35.55 15.78 -3.08 -0.05 -35.59 16 19 N -0.57 -29.80 5.29 -306.97 -1.62 -31.42 16 20 C -0.34 -19.37 9.68 84.04 0.81 -18.56 16 21 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 23 N -0.92 -49.80 13.05 21.67 0.28 -49.52 16 24 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 1.29 8.12 -2.39 -0.02 1.27 16 30 H 0.05 1.16 6.58 -2.39 -0.02 1.14 16 31 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 32 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 33 H 0.17 0.81 6.38 -2.91 -0.02 0.79 16 34 H 0.09 0.21 7.11 -2.39 -0.02 0.19 16 35 H 0.09 0.48 8.03 -2.39 -0.02 0.46 16 36 H 0.07 0.57 6.28 -2.38 -0.01 0.56 16 37 H 0.11 1.07 8.07 -2.39 -0.02 1.05 16 38 H 0.07 1.44 7.37 -2.39 -0.02 1.42 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.34 11.43 8.43 -89.69 -0.76 10.68 16 44 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 46 H 0.40 19.52 7.90 -92.71 -0.73 18.78 16 47 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -79.26 394.03 0.30 -78.96 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: -0.48 Total: 36.56 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 7.84 Total: 19.91 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -8.98 Total: -128.09 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -0.11 Total: -52.60 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -79.26 0.30 -78.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569201236.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.088 kcal (2) G-P(sol) polarization free energy of solvation -79.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds