Wall clock time and date at job start Tue Mar 31 2020 19:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32163 * 119.14107 * 2 1 4 4 C 1.32372 * 120.60188 * 180.30845 * 3 2 1 5 5 C 1.47498 * 120.50704 * 179.69202 * 4 3 2 6 6 O 1.21597 * 119.99989 * 179.71684 * 5 4 3 7 7 N 1.34774 * 120.00153 * 359.71903 * 5 4 3 8 8 C 1.47016 * 125.64922 * 359.96421 * 7 5 4 9 9 C 1.54375 * 107.29048 * 178.94216 * 8 7 5 10 10 C 1.55158 * 102.91753 * 337.85829 * 9 8 7 11 11 H 1.09002 * 111.00437 * 277.36144 * 10 9 8 12 12 C 1.53001 * 111.00472 * 153.54740 * 10 9 8 13 13 H 1.08999 * 109.46935 * 63.17849 * 12 10 9 14 14 C 1.52999 * 109.46944 * 303.18111 * 12 10 9 15 15 N 1.46499 * 109.47193 * 183.17908 * 12 10 9 16 16 C 1.36939 * 119.99933 * 205.27576 * 15 12 10 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 12 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 12 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47201 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47080 * 120.00466 * 20 18 16 23 23 H 1.48506 * 109.47018 * 240.00565 * 20 18 16 24 24 C 1.47425 * 125.64898 * 179.97438 * 7 5 4 25 25 C 1.46672 * 118.98126 * 359.41651 * 4 3 2 26 26 O 1.21860 * 120.78468 * 180.29960 * 25 4 3 27 27 N 1.35154 * 118.43396 * 0.27696 * 25 4 3 28 28 H 0.97001 * 120.37269 * 180.02562 * 27 25 4 29 29 C 1.34901 * 119.26258 * 0.02562 * 27 25 4 30 30 C 1.50698 * 119.49831 * 179.97438 * 29 27 25 31 31 H 1.09001 * 109.47797 * 270.30355 * 1 2 3 32 32 H 1.09000 * 109.46864 * 30.31008 * 1 2 3 33 33 H 1.09006 * 109.46988 * 150.29819 * 1 2 3 34 34 H 1.08997 * 109.87912 * 298.38912 * 8 7 5 35 35 H 1.08995 * 109.88908 * 59.39884 * 8 7 5 36 36 H 1.09001 * 110.75395 * 219.49062 * 9 8 7 37 37 H 1.08993 * 110.70344 * 96.20153 * 9 8 7 38 38 H 1.08999 * 109.47091 * 299.99643 * 14 12 10 39 39 H 1.08996 * 109.47098 * 60.00014 * 14 12 10 40 40 H 1.09001 * 109.46823 * 179.97438 * 14 12 10 41 41 H 0.97001 * 119.99790 * 24.99549 * 15 12 10 42 42 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 43 43 H 1.08998 * 110.36780 * 85.25460 * 24 7 5 44 44 H 1.09005 * 110.45907 * 322.98134 * 24 7 5 45 45 H 1.08996 * 109.47354 * 0.02562 * 30 29 27 46 46 H 1.09008 * 109.47002 * 120.00146 * 30 29 27 47 47 H 1.08998 * 109.47098 * 239.99682 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1543 0.0000 4 6 3.4739 1.1881 -0.0061 5 6 4.1900 2.4776 -0.0130 6 8 5.4058 2.4978 -0.0134 7 7 3.4968 3.6334 -0.0187 8 6 2.0315 3.7537 -0.0196 9 6 1.6949 5.2602 0.0002 10 6 2.9853 5.8963 0.5812 11 1 2.9914 5.8426 1.6699 12 6 3.1464 7.3415 0.1055 13 1 2.3177 7.9420 0.4805 14 6 3.1510 7.3774 -1.4241 15 7 4.4102 7.8839 0.6105 16 6 4.5568 9.2349 0.7788 17 1 3.7423 9.9010 0.5351 18 6 5.7522 9.7484 1.2628 19 7 6.7449 8.9366 1.5595 20 14 5.9525 11.5914 1.4917 21 1 4.6998 12.2793 1.0883 22 1 6.2402 11.8846 2.9188 23 1 7.0765 12.0755 0.6505 24 6 4.0822 4.9864 -0.0253 25 6 4.2170 -0.0764 0.0001 26 8 5.4356 -0.0836 0.0002 27 7 3.5185 -1.2334 0.0062 28 1 3.9814 -2.0858 0.0108 29 6 2.1702 -1.1896 0.0058 30 6 1.3860 -2.4765 0.0120 31 1 -0.3635 0.0054 1.0276 32 1 -0.3633 0.8872 -0.5187 33 1 -0.3633 -0.8927 -0.5092 34 1 1.6225 3.2940 -0.9193 35 1 1.6190 3.2683 0.8648 36 1 0.8418 5.4568 0.6497 37 1 1.5051 5.6260 -1.0088 38 1 3.9798 6.7769 -1.7991 39 1 2.2108 6.9739 -1.7998 40 1 3.2654 8.4070 -1.7630 41 1 5.1416 7.2856 0.8295 42 1 7.5803 9.2955 1.8974 43 1 4.3105 5.2960 -1.0451 44 1 4.9818 5.0152 0.5896 45 1 2.0744 -3.3215 0.0167 46 1 0.7580 -2.5149 0.9022 47 1 0.7582 -2.5237 -0.8777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569812983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:17 Heat of formation + Delta-G solvation = -34.973241 kcal Electronic energy + Delta-G solvation = -29175.216464 eV Core-core repulsion = 25164.964838 eV Total energy + Delta-G solvation = -4010.251626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.90348 -41.04017 -39.36106 -38.89888 -36.78318 -36.50213 -34.38372 -33.98159 -32.01079 -30.21436 -30.12938 -29.07257 -27.80636 -26.18341 -25.60568 -25.26092 -23.70668 -22.97996 -21.09848 -20.23215 -19.86139 -19.38273 -18.97194 -17.89535 -17.59541 -17.22486 -16.87327 -16.64896 -16.42934 -15.74573 -15.42908 -15.11879 -15.06361 -14.94718 -14.69896 -14.33452 -14.23514 -13.90915 -13.79079 -13.73254 -13.52771 -13.45937 -13.08198 -12.80998 -12.77012 -12.72611 -12.63482 -12.35813 -12.29534 -12.19347 -12.10355 -12.08521 -11.60586 -11.50877 -11.38302 -11.25723 -10.90531 -10.47313 -9.68959 -9.06014 -8.98979 -7.90560 -5.19646 -0.97051 0.50408 1.20383 1.47000 1.48676 1.51039 1.58613 1.97149 2.51635 2.58036 2.87705 2.99097 3.41579 3.42896 3.51109 3.70547 3.77875 3.86289 3.96938 4.17075 4.35125 4.46172 4.53385 4.55301 4.65198 4.67682 4.68274 4.72742 4.92050 4.93524 4.99179 5.00429 5.01416 5.09967 5.14391 5.18242 5.22023 5.27335 5.30878 5.37048 5.46956 5.55101 5.56797 5.70339 6.31004 6.37261 6.47500 6.59299 7.07081 7.35876 8.14130 8.35470 9.33604 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022787 B = 0.002530 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.490599 B =11063.398888 C =11968.418191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.049 4.049 3 N -0.327 5.327 4 C -0.063 4.063 5 C 0.579 3.421 6 O -0.578 6.578 7 N -0.600 5.600 8 C 0.121 3.879 9 C -0.118 4.118 10 C -0.093 4.093 11 H 0.069 0.931 12 C 0.179 3.821 13 H 0.061 0.939 14 C -0.161 4.161 15 N -0.742 5.742 16 C -0.230 4.230 17 H 0.083 0.917 18 C -0.086 4.086 19 N -0.976 5.976 20 Si 0.974 3.026 21 H -0.260 1.260 22 H -0.296 1.296 23 H -0.298 1.298 24 C 0.114 3.886 25 C 0.489 3.511 26 O -0.546 6.546 27 N -0.564 5.564 28 H 0.438 0.562 29 C 0.201 3.799 30 C -0.131 4.131 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.036 0.964 39 H 0.085 0.915 40 H 0.037 0.963 41 H 0.368 0.632 42 H 0.248 0.752 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.098 0.902 46 H 0.130 0.870 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.572 -29.114 -5.228 39.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.180 4.180 3 N -0.045 5.045 4 C -0.223 4.223 5 C 0.368 3.632 6 O -0.456 6.456 7 N -0.333 5.333 8 C 0.000 4.000 9 C -0.156 4.156 10 C -0.113 4.113 11 H 0.088 0.912 12 C 0.071 3.929 13 H 0.079 0.921 14 C -0.221 4.221 15 N -0.382 5.382 16 C -0.362 4.362 17 H 0.101 0.899 18 C -0.277 4.277 19 N -0.628 5.628 20 Si 0.803 3.197 21 H -0.184 1.184 22 H -0.224 1.224 23 H -0.226 1.226 24 C -0.009 4.009 25 C 0.284 3.716 26 O -0.423 6.423 27 N -0.198 5.198 28 H 0.281 0.719 29 C 0.082 3.918 30 C -0.187 4.187 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.055 0.945 39 H 0.103 0.897 40 H 0.056 0.944 41 H 0.200 0.800 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.054 0.946 45 H 0.117 0.883 46 H 0.148 0.852 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -24.718 -28.162 -5.231 37.834 hybrid contribution 2.553 0.056 0.435 2.590 sum -22.165 -28.106 -4.796 36.114 Atomic orbital electron populations 1.20722 0.83340 1.05454 1.04466 1.21128 1.00027 0.85125 1.11764 1.67671 1.06713 1.31236 0.98884 1.22856 0.89843 0.91985 1.17610 1.17322 0.85679 0.82894 0.77339 1.90855 1.15050 1.87126 1.52616 1.48385 1.09625 1.04305 1.70960 1.22280 0.77278 0.96917 1.03507 1.22939 0.96521 0.92567 1.03611 1.22496 0.95207 0.93915 0.99698 0.91206 1.20354 0.88399 0.91246 0.92877 0.92076 1.22466 1.01290 1.00619 0.97684 1.42770 1.13201 1.04235 1.77946 1.19725 0.97941 0.84943 1.33549 0.89945 1.25628 0.96581 1.02060 1.03458 1.69877 1.04885 1.35063 1.52941 0.85054 0.77695 0.80353 0.76581 1.18384 1.22392 1.22614 1.22276 0.96850 0.80891 1.00842 1.19059 0.87802 0.85221 0.79490 1.91032 1.13931 1.86190 1.51175 1.43749 1.07555 1.11295 1.57215 0.71853 1.22629 0.82318 1.01295 0.85605 1.21616 1.00848 0.88428 1.07840 0.89406 0.90531 0.87070 0.89399 0.89975 0.87077 0.88457 0.94528 0.89693 0.94365 0.80042 0.94370 0.91138 0.94619 0.88291 0.85196 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.14 9.65 71.24 0.69 0.55 16 2 C -0.05 -0.53 6.70 42.03 0.28 -0.25 16 3 N -0.33 -6.82 6.93 -169.24 -1.17 -7.99 16 4 C -0.06 -1.95 6.92 43.71 0.30 -1.64 16 5 C 0.58 23.43 7.83 86.68 0.68 24.11 16 6 O -0.58 -29.82 15.76 15.56 0.25 -29.58 16 7 N -0.60 -21.05 3.33 -815.55 -2.71 -23.76 16 8 C 0.12 2.90 5.41 86.75 0.47 3.37 16 9 C -0.12 -2.63 6.31 31.80 0.20 -2.43 16 10 C -0.09 -3.14 3.07 -9.41 -0.03 -3.16 16 11 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 12 C 0.18 6.99 2.84 44.99 0.13 7.12 16 13 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 14 C -0.16 -5.62 8.85 71.98 0.64 -4.98 16 15 N -0.74 -38.91 5.07 -322.94 -1.64 -40.54 16 16 C -0.23 -13.07 9.93 84.03 0.83 -12.24 16 17 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 18 C -0.09 -5.16 5.50 84.86 0.47 -4.69 16 19 N -0.98 -63.88 13.06 21.65 0.28 -63.60 16 20 Si 0.97 48.13 29.55 68.60 2.03 50.16 16 21 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 23 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 24 C 0.11 4.49 5.68 86.85 0.49 4.98 16 25 C 0.49 14.35 7.93 86.39 0.68 15.03 16 26 O -0.55 -22.12 16.40 14.71 0.24 -21.88 16 27 N -0.56 -7.75 5.29 -301.75 -1.60 -9.34 16 28 H 0.44 3.19 8.64 -92.71 -0.80 2.38 16 29 C 0.20 1.28 6.78 41.61 0.28 1.56 16 30 C -0.13 0.79 8.83 71.24 0.63 1.42 16 31 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.11 -0.61 6.43 -2.38 -0.02 -0.63 16 34 H 0.09 1.80 7.57 -2.39 -0.02 1.78 16 35 H 0.08 1.79 7.42 -2.39 -0.02 1.77 16 36 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.10 1.91 5.74 -2.39 -0.01 1.89 16 38 H 0.04 1.37 6.04 -2.39 -0.01 1.36 16 39 H 0.08 2.20 6.07 -2.39 -0.01 2.18 16 40 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.37 21.54 7.06 -92.71 -0.65 20.89 16 42 H 0.25 15.76 8.31 -92.71 -0.77 14.99 16 43 H 0.07 2.85 5.66 -2.39 -0.01 2.84 16 44 H 0.04 1.71 7.79 -2.38 -0.02 1.69 16 45 H 0.10 -0.82 7.89 -2.39 -0.02 -0.84 16 46 H 0.13 -1.20 8.09 -2.38 -0.02 -1.22 16 47 H 0.13 -1.32 7.36 -2.39 -0.02 -1.33 16 Total: -1.00 -98.63 375.65 2.00 -96.63 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -0.43 Total: 21.17 kcal Atomic # 6 Polarization: 21.99 SS G_CDS: 6.75 Total: 28.74 kcal Atomic # 7 Polarization: -138.40 SS G_CDS: -6.84 Total: -145.24 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: 0.49 Total: -51.46 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Total: -98.63 2.00 -96.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569812983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.653 kcal (2) G-P(sol) polarization free energy of solvation -98.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds