Wall clock time and date at job start Tue Mar 31 2020 19:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32167 * 119.13927 * 2 1 4 4 C 1.32370 * 120.60003 * 180.02562 * 3 2 1 5 5 C 1.47504 * 120.50684 * 180.02562 * 4 3 2 6 6 O 1.21593 * 119.99972 * 179.97438 * 5 4 3 7 7 N 1.34772 * 119.99719 * 359.97438 * 5 4 3 8 8 C 1.47020 * 125.65285 * 0.02562 * 7 5 4 9 9 C 1.54327 * 107.27410 * 181.02593 * 8 7 5 10 10 C 1.55165 * 102.93809 * 22.19568 * 9 8 7 11 11 H 1.08995 * 111.00624 * 82.57317 * 10 9 8 12 12 C 1.53001 * 110.99917 * 206.42341 * 10 9 8 13 13 H 1.09001 * 109.47354 * 60.81426 * 12 10 9 14 14 C 1.53003 * 109.46961 * 180.81414 * 12 10 9 15 15 N 1.46504 * 109.47112 * 300.81050 * 12 10 9 16 16 C 1.36938 * 119.99578 * 155.00385 * 15 12 10 17 17 H 1.07998 * 120.00604 * 359.97438 * 16 15 12 18 18 C 1.38810 * 119.99813 * 180.02562 * 16 15 12 19 19 N 1.31623 * 119.99843 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00348 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46762 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47255 * 119.99677 * 20 18 16 23 23 H 1.48494 * 109.47328 * 240.00101 * 20 18 16 24 24 C 1.47428 * 125.64504 * 179.71585 * 7 5 4 25 25 C 1.46673 * 118.98546 * 0.02562 * 4 3 2 26 26 O 1.21855 * 120.78818 * 180.02562 * 25 4 3 27 27 N 1.35153 * 118.42880 * 0.02562 * 25 4 3 28 28 H 0.97002 * 120.36616 * 179.97438 * 27 25 4 29 29 C 1.34898 * 119.26523 * 0.25150 * 27 25 4 30 30 C 1.50703 * 119.50003 * 179.74497 * 29 27 25 31 31 H 1.08998 * 109.47514 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.47046 * 120.00173 * 1 2 3 33 33 H 1.09001 * 109.47162 * 239.99560 * 1 2 3 34 34 H 1.09000 * 109.88163 * 300.44233 * 8 7 5 35 35 H 1.08997 * 109.88093 * 61.45738 * 8 7 5 36 36 H 1.08998 * 110.71939 * 140.55211 * 9 8 7 37 37 H 1.08999 * 110.72167 * 263.83218 * 9 8 7 38 38 H 1.08992 * 109.47101 * 54.74954 * 14 12 10 39 39 H 1.09001 * 109.46914 * 174.75445 * 14 12 10 40 40 H 1.09001 * 109.46888 * 294.74460 * 14 12 10 41 41 H 0.96994 * 120.00093 * 335.00606 * 15 12 10 42 42 H 0.96998 * 119.99636 * 180.02562 * 19 18 16 43 43 H 1.08998 * 110.36353 * 274.74141 * 24 7 5 44 44 H 1.09004 * 110.37037 * 37.06441 * 24 7 5 45 45 H 1.09002 * 109.47055 * 0.02562 * 30 29 27 46 46 H 1.09001 * 109.46680 * 119.99679 * 30 29 27 47 47 H 1.08989 * 109.47587 * 240.00272 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1881 -0.0005 5 6 4.1900 2.4777 0.0001 6 8 5.4057 2.4979 0.0001 7 7 3.4967 3.6334 0.0006 8 6 2.0315 3.7538 0.0012 9 6 1.6954 5.2598 -0.0247 10 6 2.9852 5.8936 -0.6097 11 1 2.9908 5.8344 -1.6980 12 6 3.1463 7.3410 -0.1406 13 1 3.2217 7.3643 0.9466 14 6 4.4155 7.9372 -0.7527 15 7 1.9841 8.1246 -0.5665 16 6 1.6291 9.2530 0.1234 17 1 2.2056 9.5651 0.9816 18 6 0.5276 9.9953 -0.2798 19 7 -0.1754 9.6147 -1.3255 20 14 0.0429 11.5342 0.6616 21 1 0.9872 11.7431 1.7884 22 1 0.0902 12.7067 -0.2485 23 1 -1.3344 11.3758 1.1936 24 6 4.0822 4.9864 0.0071 25 6 4.2171 -0.0763 -0.0016 26 8 5.4356 -0.0836 -0.0017 27 7 3.5185 -1.2333 -0.0027 28 1 3.9814 -2.0857 -0.0038 29 6 2.1702 -1.1895 -0.0078 30 6 1.3859 -2.4764 -0.0148 31 1 -0.3634 1.0276 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 -0.3633 -0.5139 0.8900 34 1 1.6192 3.2667 -0.8825 35 1 1.6223 3.2958 0.9017 36 1 0.8418 5.4533 -0.6744 37 1 1.5063 5.6302 0.9828 38 1 4.3813 7.8293 -1.8367 39 1 4.4814 8.9942 -0.4946 40 1 5.2879 7.4129 -0.3626 41 1 1.4660 7.8442 -1.3371 42 1 -0.9448 10.1336 -1.6075 43 1 4.3060 5.2979 1.0274 44 1 4.9838 5.0127 -0.6049 45 1 2.0744 -3.3215 -0.0142 46 1 0.7547 -2.5219 0.8727 47 1 0.7616 -2.5166 -0.9072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569812984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:20 Heat of formation + Delta-G solvation = -38.849422 kcal Electronic energy + Delta-G solvation = -29025.292360 eV Core-core repulsion = 25014.872651 eV Total energy + Delta-G solvation = -4010.419709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.89471 -40.97443 -39.30931 -38.81163 -36.79383 -36.53317 -34.30994 -33.95019 -31.88474 -30.77389 -30.07268 -28.89124 -27.81274 -26.19520 -25.59734 -24.95213 -23.48127 -22.74229 -21.08419 -20.98058 -19.82449 -19.29078 -19.03561 -17.90293 -17.55422 -17.23275 -16.89899 -16.54604 -16.38786 -15.69150 -15.35750 -15.08756 -14.96589 -14.83170 -14.62796 -14.24936 -14.06417 -13.93117 -13.73077 -13.71499 -13.64045 -13.39907 -13.17832 -12.88845 -12.82624 -12.80213 -12.77099 -12.39266 -12.34030 -12.21679 -12.09084 -11.96850 -11.64183 -11.51312 -11.45141 -11.26608 -10.89271 -10.46228 -9.73075 -9.06635 -8.93768 -7.87333 -5.14039 -0.96310 0.50849 1.21535 1.50595 1.50690 1.51668 1.60752 1.96381 2.52539 2.60976 2.88329 2.98939 3.41612 3.45405 3.50404 3.72229 3.76611 3.85766 3.91665 4.27610 4.36626 4.42207 4.52053 4.55532 4.63439 4.66445 4.67131 4.73228 4.86449 4.91511 4.98121 5.01203 5.03640 5.07195 5.11232 5.19769 5.22770 5.24758 5.27768 5.40153 5.41372 5.53939 5.59006 5.63630 6.34705 6.37767 6.44629 6.59521 7.05637 7.42047 8.17367 8.42330 9.36239 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018848 B = 0.002564 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.237913 B =10918.985089 C =12153.737713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.051 4.051 3 N -0.334 5.334 4 C -0.064 4.064 5 C 0.587 3.413 6 O -0.568 6.568 7 N -0.601 5.601 8 C 0.129 3.871 9 C -0.112 4.112 10 C -0.092 4.092 11 H 0.078 0.922 12 C 0.183 3.817 13 H 0.047 0.953 14 C -0.160 4.160 15 N -0.729 5.729 16 C -0.228 4.228 17 H 0.072 0.928 18 C -0.074 4.074 19 N -0.967 5.967 20 Si 0.965 3.035 21 H -0.269 1.269 22 H -0.298 1.298 23 H -0.294 1.294 24 C 0.120 3.880 25 C 0.493 3.507 26 O -0.542 6.542 27 N -0.564 5.564 28 H 0.438 0.562 29 C 0.202 3.798 30 C -0.130 4.130 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.038 0.962 40 H 0.063 0.937 41 H 0.374 0.626 42 H 0.249 0.751 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.129 0.871 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.633 -31.197 3.073 31.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.181 4.181 3 N -0.052 5.052 4 C -0.224 4.224 5 C 0.376 3.624 6 O -0.447 6.447 7 N -0.333 5.333 8 C 0.007 3.993 9 C -0.150 4.150 10 C -0.112 4.112 11 H 0.096 0.904 12 C 0.075 3.925 13 H 0.065 0.935 14 C -0.220 4.220 15 N -0.369 5.369 16 C -0.360 4.360 17 H 0.090 0.910 18 C -0.266 4.266 19 N -0.619 5.619 20 Si 0.795 3.205 21 H -0.194 1.194 22 H -0.226 1.226 23 H -0.221 1.221 24 C -0.003 4.003 25 C 0.287 3.713 26 O -0.419 6.419 27 N -0.198 5.198 28 H 0.282 0.718 29 C 0.083 3.917 30 C -0.187 4.187 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.206 0.794 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.119 0.881 46 H 0.147 0.853 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.682 -30.310 3.233 30.528 hybrid contribution 0.517 0.302 -0.058 0.602 sum -1.165 -30.007 3.175 30.197 Atomic orbital electron populations 1.20690 0.83919 1.04689 1.04810 1.21026 0.99806 0.85284 1.12008 1.67739 1.07230 1.31258 0.98972 1.23014 0.89713 0.92499 1.17217 1.17127 0.85638 0.82464 0.77206 1.90824 1.14278 1.87007 1.52596 1.48349 1.09055 1.04862 1.71068 1.22136 0.78071 0.96024 1.03054 1.22554 0.97532 0.92970 1.01972 1.22509 0.94677 0.93890 1.00088 0.90397 1.20278 0.87104 0.88390 0.96771 0.93461 1.22363 0.98508 1.00536 1.00577 1.42495 1.31487 1.27929 1.34983 1.19584 1.07695 1.00963 1.07808 0.90961 1.25420 0.99086 1.02434 0.99679 1.69809 1.21248 1.41911 1.28890 0.85187 0.77567 0.79801 0.77920 1.19399 1.22562 1.22110 1.22284 0.96662 0.80101 1.01245 1.18990 0.87794 0.85052 0.79423 1.91015 1.13602 1.86175 1.51136 1.43728 1.07373 1.11431 1.57313 0.71774 1.22512 0.82459 1.01028 0.85731 1.21580 1.00839 0.88539 1.07698 0.91282 0.88191 0.88129 0.90254 0.90118 0.90258 0.91180 0.93775 0.94307 0.91772 0.79386 0.94223 0.90786 0.91005 0.88090 0.85281 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 9.07 71.24 0.65 0.25 16 2 C -0.05 -0.61 6.70 42.03 0.28 -0.33 16 3 N -0.33 -7.29 6.90 -169.24 -1.17 -8.46 16 4 C -0.06 -1.87 6.92 43.71 0.30 -1.57 16 5 C 0.59 21.36 7.83 86.69 0.68 22.04 16 6 O -0.57 -25.33 15.76 15.57 0.25 -25.08 16 7 N -0.60 -19.47 3.32 -815.12 -2.71 -22.18 16 8 C 0.13 3.54 5.41 86.73 0.47 4.01 16 9 C -0.11 -3.49 6.07 31.79 0.19 -3.30 16 10 C -0.09 -3.06 2.63 -9.32 -0.02 -3.08 16 11 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 12 C 0.18 7.14 2.42 44.99 0.11 7.25 16 13 H 0.05 1.87 7.99 -2.39 -0.02 1.86 16 14 C -0.16 -5.86 9.29 71.98 0.67 -5.19 16 15 N -0.73 -35.52 4.76 -322.93 -1.54 -37.05 16 16 C -0.23 -12.40 9.93 84.03 0.83 -11.57 16 17 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 18 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 19 N -0.97 -58.10 13.06 21.65 0.28 -57.82 16 20 Si 0.96 45.95 29.55 68.60 2.03 47.98 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 24 C 0.12 3.87 5.75 86.93 0.50 4.37 16 25 C 0.49 13.35 7.93 86.39 0.68 14.03 16 26 O -0.54 -19.99 16.40 14.73 0.24 -19.75 16 27 N -0.56 -7.16 5.29 -301.76 -1.60 -8.76 16 28 H 0.44 2.63 8.64 -92.71 -0.80 1.83 16 29 C 0.20 1.36 6.78 41.61 0.28 1.64 16 30 C -0.13 0.67 9.08 71.24 0.65 1.32 16 31 H 0.07 0.62 8.10 -2.39 -0.02 0.60 16 32 H 0.10 -0.01 7.82 -2.38 -0.02 -0.03 16 33 H 0.10 -0.03 7.84 -2.39 -0.02 -0.05 16 34 H 0.08 2.06 7.44 -2.39 -0.02 2.04 16 35 H 0.08 2.05 7.55 -2.39 -0.02 2.03 16 36 H 0.08 2.58 8.14 -2.39 -0.02 2.57 16 37 H 0.07 2.30 8.04 -2.39 -0.02 2.28 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 2.00 7.75 -2.39 -0.02 1.99 16 41 H 0.37 19.54 7.80 -92.71 -0.72 18.81 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.07 2.34 7.98 -2.39 -0.02 2.32 16 44 H 0.07 2.41 8.03 -2.39 -0.02 2.39 16 45 H 0.10 -0.82 7.90 -2.39 -0.02 -0.84 16 46 H 0.13 -1.07 7.83 -2.39 -0.02 -1.09 16 47 H 0.13 -1.05 7.83 -2.39 -0.02 -1.06 16 Total: -1.00 -86.33 384.92 2.01 -84.32 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -0.52 Total: 20.66 kcal Atomic # 6 Polarization: 19.41 SS G_CDS: 6.74 Total: 26.15 kcal Atomic # 7 Polarization: -127.55 SS G_CDS: -6.73 Total: -134.27 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: 0.49 Total: -44.83 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -86.33 2.01 -84.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569812984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.469 kcal (2) G-P(sol) polarization free energy of solvation -86.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds