Wall clock time and date at job start Tue Mar 31 2020 19:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38170 * 120.50214 * 2 1 4 4 N 1.31801 * 120.89559 * 180.28678 * 3 2 1 5 5 C 1.31829 * 122.04626 * 359.74679 * 4 3 2 6 6 C 1.38125 * 120.89768 * 359.97438 * 5 4 3 7 7 C 1.39797 * 120.49874 * 179.78178 * 2 1 3 8 8 C 1.48152 * 120.92174 * 359.97438 * 7 2 1 9 9 O 1.21513 * 119.99988 * 353.97646 * 8 7 2 10 10 N 1.34775 * 120.00069 * 173.69469 * 8 7 2 11 11 C 1.46501 * 120.00501 * 180.02562 * 10 8 7 12 12 C 1.52991 * 109.47368 * 185.02130 * 11 10 8 13 13 H 1.09003 * 109.47528 * 294.47451 * 12 11 10 14 14 C 1.53007 * 109.47096 * 174.47612 * 12 11 10 15 15 N 1.46899 * 109.47491 * 54.47711 * 12 11 10 16 16 C 1.46900 * 111.00231 * 191.91935 * 15 12 11 17 17 C 1.46906 * 110.99812 * 67.96582 * 15 12 11 18 18 C 1.50698 * 109.46831 * 190.00297 * 17 15 12 19 19 O 1.21300 * 120.00182 * 359.97438 * 18 17 15 20 20 N 1.34774 * 119.99974 * 180.02562 * 18 17 15 21 21 C 1.37098 * 120.00378 * 179.97438 * 20 18 17 22 22 H 1.08006 * 119.99522 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00530 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99634 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00224 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46998 * 60.00254 * 25 23 21 27 27 H 1.48495 * 109.46817 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47085 * 300.00399 * 25 23 21 29 29 H 1.09003 * 109.47164 * 263.51538 * 1 2 3 30 30 H 1.08993 * 109.47301 * 23.51262 * 1 2 3 31 31 H 1.08999 * 109.47688 * 143.51819 * 1 2 3 32 32 H 1.07995 * 119.55282 * 0.02562 * 3 2 1 33 33 H 1.07994 * 119.54834 * 180.02562 * 5 4 3 34 34 H 1.08007 * 120.49650 * 180.02562 * 6 5 4 35 35 H 0.97001 * 119.99968 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.47156 * 305.02446 * 11 10 8 37 37 H 1.08999 * 109.46768 * 65.01902 * 11 10 8 38 38 H 1.08994 * 109.47160 * 179.97438 * 14 12 11 39 39 H 1.08998 * 109.47093 * 299.99901 * 14 12 11 40 40 H 1.09006 * 109.46958 * 59.99921 * 14 12 11 41 41 H 1.09003 * 109.47046 * 64.44783 * 16 15 12 42 42 H 1.09000 * 109.47111 * 184.44786 * 16 15 12 43 43 H 1.08996 * 109.47161 * 304.45296 * 16 15 12 44 44 H 1.08993 * 109.47063 * 309.99781 * 17 15 12 45 45 H 1.08995 * 109.46903 * 70.00031 * 17 15 12 46 46 H 0.97001 * 120.00088 * 359.97438 * 20 18 17 47 47 H 0.96996 * 120.00061 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1995 -0.0057 5 6 4.2334 0.0870 -0.0066 6 6 3.6136 -1.1474 -0.0011 7 6 2.2165 -1.2045 0.0046 8 6 1.5077 -2.5055 0.0101 9 8 0.2981 -2.5380 0.1211 10 7 2.2041 -3.6528 -0.1137 11 6 1.5033 -4.9393 -0.1088 12 6 2.5257 -6.0771 -0.1368 13 1 3.0667 -6.0563 -1.0829 14 6 1.8014 -7.4172 0.0070 15 7 3.4735 -5.9112 0.9731 16 6 4.6264 -6.8086 0.8195 17 6 2.8110 -6.1222 2.2672 18 6 3.7388 -5.7076 3.3799 19 8 4.8435 -5.2790 3.1206 20 7 3.3415 -5.8139 4.6634 21 6 4.1857 -5.4373 5.6758 22 1 5.1691 -5.0549 5.4448 23 6 3.7760 -5.5464 6.9990 24 7 2.5793 -6.0112 7.2800 25 14 4.9260 -5.0325 8.3784 26 1 5.2700 -3.5959 8.2268 27 1 4.2565 -5.2463 9.6865 28 1 6.1660 -5.8473 8.3185 29 1 -0.3634 -0.1161 1.0211 30 1 -0.3633 0.9423 -0.4100 31 1 -0.3634 -0.8262 -0.6110 32 1 1.6692 2.1263 0.0004 33 1 5.3120 0.1415 -0.0109 34 1 4.1994 -2.0548 -0.0015 35 1 3.1693 -3.6267 -0.2061 36 1 0.8958 -5.0188 0.7927 37 1 0.8608 -5.0064 -0.9868 38 1 2.5297 -8.2278 -0.0134 39 1 1.2604 -7.4381 0.9530 40 1 1.0980 -7.5403 -0.8166 41 1 5.1854 -6.5322 -0.0746 42 1 5.2726 -6.7227 1.6930 43 1 4.2766 -7.8367 0.7258 44 1 1.9009 -5.5240 2.3111 45 1 2.5585 -7.1766 2.3784 46 1 2.4582 -6.1570 4.8709 47 1 2.2933 -6.0877 8.2037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570709029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:10 Heat of formation + Delta-G solvation = -24.927749 kcal Electronic energy + Delta-G solvation = -29172.072202 eV Core-core repulsion = 25162.256181 eV Total energy + Delta-G solvation = -4009.816020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.80938 -39.47162 -38.68575 -37.26213 -34.62830 -33.88061 -33.45748 -32.29336 -31.27013 -30.83298 -28.12867 -27.69498 -26.53310 -25.06813 -24.45714 -23.77475 -22.23925 -20.75601 -20.43032 -18.96208 -18.05616 -17.78217 -16.89091 -16.68606 -15.68058 -15.67485 -15.38251 -15.31275 -14.94844 -14.81802 -14.44783 -14.19931 -13.98049 -13.81688 -13.57276 -13.50183 -13.44439 -12.91952 -12.77449 -12.68613 -12.39149 -12.24706 -12.11278 -11.86258 -11.65730 -11.50124 -11.30920 -11.19606 -10.89726 -10.81112 -10.45672 -10.25428 -10.23115 -9.92610 -9.48362 -9.40468 -9.11905 -8.95842 -8.50168 -8.01537 -7.92283 -6.43226 -3.84269 0.63767 0.96080 2.86549 3.06409 3.18521 3.24730 3.28638 3.73212 3.86891 3.92478 4.21060 4.28909 4.52861 4.58574 4.65318 4.71561 4.85086 4.92703 5.05240 5.16336 5.23520 5.28604 5.41897 5.42088 5.47270 5.52677 5.57886 5.68222 5.69295 5.72546 5.73674 5.84593 5.90261 5.93630 5.96278 6.09327 6.23405 6.25202 6.42427 6.47284 6.50724 7.16209 7.26498 7.49706 7.53155 7.77915 8.03852 8.15503 8.59278 9.16031 9.52332 10.03560 10.74367 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008789 B = 0.003588 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3185.064215 B = 7801.133697 C = 9519.920221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.079 4.079 3 C 0.089 3.911 4 N -0.468 5.468 5 C 0.086 3.914 6 C -0.129 4.129 7 C -0.092 4.092 8 C 0.557 3.443 9 O -0.533 6.533 10 N -0.703 5.703 11 C 0.129 3.871 12 C 0.064 3.936 13 H 0.089 0.911 14 C -0.186 4.186 15 N -0.511 5.511 16 C 0.021 3.979 17 C 0.041 3.959 18 C 0.443 3.557 19 O -0.579 6.579 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.024 3.976 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.144 0.856 35 H 0.409 0.591 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.018 0.982 44 H 0.086 0.914 45 H 0.051 0.949 46 H 0.391 0.609 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.239 3.962 -17.686 18.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.082 4.082 3 C -0.069 4.069 4 N -0.176 5.176 5 C -0.070 4.070 6 C -0.149 4.149 7 C -0.103 4.103 8 C 0.343 3.657 9 O -0.412 6.412 10 N -0.355 5.355 11 C 0.005 3.995 12 C -0.046 4.046 13 H 0.107 0.893 14 C -0.245 4.245 15 N -0.235 5.235 16 C -0.127 4.127 17 C -0.090 4.090 18 C 0.229 3.771 19 O -0.464 6.464 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.178 4.178 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.177 0.823 33 H 0.179 0.821 34 H 0.161 0.839 35 H 0.246 0.754 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.036 0.964 44 H 0.105 0.895 45 H 0.069 0.931 46 H 0.224 0.776 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.824 5.435 -17.596 18.631 hybrid contribution -0.235 -1.726 1.031 2.024 sum -3.059 3.709 -16.565 17.248 Atomic orbital electron populations 1.20961 0.89127 1.03104 1.03971 1.21109 0.98371 0.92508 0.96210 1.22705 0.89813 0.97303 0.97077 1.67534 1.08298 1.31911 1.09888 1.22724 1.00632 0.87206 0.96458 1.22441 0.93934 1.00510 0.98049 1.20236 0.93823 0.93859 1.02404 1.18123 0.86886 0.83685 0.76958 1.90720 1.13523 1.87201 1.49721 1.45680 1.11679 1.05059 1.73034 1.21452 0.94198 0.81459 1.02409 1.22038 0.93314 0.93293 0.95926 0.89315 1.22399 1.01319 0.97785 1.02973 1.61803 1.07598 1.53830 1.00269 1.22546 0.93514 0.92548 1.04074 1.21917 0.97644 0.99897 0.89526 1.19710 0.88734 0.85259 0.83428 1.90477 1.22213 1.50605 1.83099 1.41861 1.17098 1.56703 1.04233 1.19631 0.98847 1.39836 0.84649 0.87987 1.25255 0.96731 0.97259 0.98578 1.69602 1.18201 1.45833 1.20576 0.85934 0.79689 0.79286 0.79420 1.19884 1.20954 1.19910 0.90294 0.92046 0.88761 0.82298 0.82095 0.83878 0.75378 0.90907 0.91125 0.91755 0.91595 0.91840 0.92152 0.88572 0.96360 0.89545 0.93085 0.77558 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 8.82 36.00 0.32 -0.95 16 2 C -0.08 -0.97 5.93 -104.07 -0.62 -1.59 16 3 C 0.09 1.01 10.83 -17.59 -0.19 0.82 16 4 N -0.47 -5.89 10.34 -13.31 -0.14 -6.03 16 5 C 0.09 0.99 11.17 -17.59 -0.20 0.79 16 6 C -0.13 -1.51 9.60 -39.03 -0.37 -1.88 16 7 C -0.09 -1.21 5.91 -104.65 -0.62 -1.83 16 8 C 0.56 7.86 7.74 -12.19 -0.09 7.76 16 9 O -0.53 -8.63 13.54 5.35 0.07 -8.56 16 10 N -0.70 -8.70 5.31 -61.16 -0.32 -9.02 16 11 C 0.13 1.48 4.91 -4.05 -0.02 1.46 16 12 C 0.06 0.68 2.45 -67.71 -0.17 0.51 16 13 H 0.09 0.82 8.05 -51.93 -0.42 0.40 16 14 C -0.19 -1.78 8.43 37.16 0.31 -1.47 16 15 N -0.51 -7.28 3.92 -236.33 -0.93 -8.21 16 16 C 0.02 0.29 9.10 60.06 0.55 0.84 16 17 C 0.04 0.69 4.33 -4.97 -0.02 0.67 16 18 C 0.44 10.04 7.43 -10.99 -0.08 9.96 16 19 O -0.58 -14.71 13.95 5.54 0.08 -14.64 16 20 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 21 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 22 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 23 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -24.49 13.05 55.50 0.72 -23.76 16 25 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.51 8.05 -51.93 -0.42 0.09 16 31 H 0.09 1.17 5.98 -51.93 -0.31 0.86 16 32 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.14 1.45 6.58 -52.48 -0.35 1.11 16 35 H 0.41 4.73 6.39 -40.82 -0.26 4.47 16 36 H 0.07 0.96 6.67 -51.93 -0.35 0.62 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.62 6.68 -51.93 -0.35 0.27 16 39 H 0.07 0.69 6.54 -51.93 -0.34 0.35 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 1.73 5.79 -51.93 -0.30 1.43 16 43 H 0.02 0.23 6.55 -51.93 -0.34 -0.11 16 44 H 0.09 1.42 6.28 -51.93 -0.33 1.09 16 45 H 0.05 0.79 6.83 -51.93 -0.35 0.44 16 46 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 47 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -32.39 380.55 -7.78 -40.17 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -6.48 Total: 15.19 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -1.44 Total: 7.24 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.72 Total: -61.13 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.15 Total: -23.19 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.39 -7.78 -40.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570709029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.243 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds