Wall clock time and date at job start Tue Mar 31 2020 19:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38170 * 120.50214 * 2 1 4 4 N 1.31801 * 120.89559 * 180.28678 * 3 2 1 5 5 C 1.31829 * 122.04626 * 359.74679 * 4 3 2 6 6 C 1.38125 * 120.89768 * 359.97438 * 5 4 3 7 7 C 1.39797 * 120.49874 * 179.78178 * 2 1 3 8 8 C 1.48152 * 120.92174 * 359.97438 * 7 2 1 9 9 O 1.21513 * 119.99988 * 353.97646 * 8 7 2 10 10 N 1.34775 * 120.00069 * 173.69469 * 8 7 2 11 11 C 1.46501 * 120.00501 * 180.02562 * 10 8 7 12 12 C 1.52991 * 109.47368 * 185.02130 * 11 10 8 13 13 H 1.09003 * 109.47528 * 294.47451 * 12 11 10 14 14 C 1.53007 * 109.47096 * 174.47612 * 12 11 10 15 15 N 1.46899 * 109.47491 * 54.47711 * 12 11 10 16 16 C 1.46900 * 111.00231 * 191.91935 * 15 12 11 17 17 C 1.46906 * 110.99812 * 67.96582 * 15 12 11 18 18 C 1.50698 * 109.46831 * 190.00297 * 17 15 12 19 19 O 1.21300 * 120.00182 * 359.97438 * 18 17 15 20 20 N 1.34774 * 119.99974 * 180.02562 * 18 17 15 21 21 C 1.37098 * 120.00378 * 179.97438 * 20 18 17 22 22 H 1.08006 * 119.99522 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00530 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99634 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00224 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46998 * 60.00254 * 25 23 21 27 27 H 1.48495 * 109.46817 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47085 * 300.00399 * 25 23 21 29 29 H 1.09003 * 109.47164 * 263.51538 * 1 2 3 30 30 H 1.08993 * 109.47301 * 23.51262 * 1 2 3 31 31 H 1.08999 * 109.47688 * 143.51819 * 1 2 3 32 32 H 1.07995 * 119.55282 * 0.02562 * 3 2 1 33 33 H 1.07994 * 119.54834 * 180.02562 * 5 4 3 34 34 H 1.08007 * 120.49650 * 180.02562 * 6 5 4 35 35 H 0.97001 * 119.99968 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.47156 * 305.02446 * 11 10 8 37 37 H 1.08999 * 109.46768 * 65.01902 * 11 10 8 38 38 H 1.08994 * 109.47160 * 179.97438 * 14 12 11 39 39 H 1.08998 * 109.47093 * 299.99901 * 14 12 11 40 40 H 1.09006 * 109.46958 * 59.99921 * 14 12 11 41 41 H 1.09003 * 109.47046 * 64.44783 * 16 15 12 42 42 H 1.09000 * 109.47111 * 184.44786 * 16 15 12 43 43 H 1.08996 * 109.47161 * 304.45296 * 16 15 12 44 44 H 1.08993 * 109.47063 * 309.99781 * 17 15 12 45 45 H 1.08995 * 109.46903 * 70.00031 * 17 15 12 46 46 H 0.97001 * 120.00088 * 359.97438 * 20 18 17 47 47 H 0.96996 * 120.00061 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1995 -0.0057 5 6 4.2334 0.0870 -0.0066 6 6 3.6136 -1.1474 -0.0011 7 6 2.2165 -1.2045 0.0046 8 6 1.5077 -2.5055 0.0101 9 8 0.2981 -2.5380 0.1211 10 7 2.2041 -3.6528 -0.1137 11 6 1.5033 -4.9393 -0.1088 12 6 2.5257 -6.0771 -0.1368 13 1 3.0667 -6.0563 -1.0829 14 6 1.8014 -7.4172 0.0070 15 7 3.4735 -5.9112 0.9731 16 6 4.6264 -6.8086 0.8195 17 6 2.8110 -6.1222 2.2672 18 6 3.7388 -5.7076 3.3799 19 8 4.8435 -5.2790 3.1206 20 7 3.3415 -5.8139 4.6634 21 6 4.1857 -5.4373 5.6758 22 1 5.1691 -5.0549 5.4448 23 6 3.7760 -5.5464 6.9990 24 7 2.5793 -6.0112 7.2800 25 14 4.9260 -5.0325 8.3784 26 1 5.2700 -3.5959 8.2268 27 1 4.2565 -5.2463 9.6865 28 1 6.1660 -5.8473 8.3185 29 1 -0.3634 -0.1161 1.0211 30 1 -0.3633 0.9423 -0.4100 31 1 -0.3634 -0.8262 -0.6110 32 1 1.6692 2.1263 0.0004 33 1 5.3120 0.1415 -0.0109 34 1 4.1994 -2.0548 -0.0015 35 1 3.1693 -3.6267 -0.2061 36 1 0.8958 -5.0188 0.7927 37 1 0.8608 -5.0064 -0.9868 38 1 2.5297 -8.2278 -0.0134 39 1 1.2604 -7.4381 0.9530 40 1 1.0980 -7.5403 -0.8166 41 1 5.1854 -6.5322 -0.0746 42 1 5.2726 -6.7227 1.6930 43 1 4.2766 -7.8367 0.7258 44 1 1.9009 -5.5240 2.3111 45 1 2.5585 -7.1766 2.3784 46 1 2.4582 -6.1570 4.8709 47 1 2.2933 -6.0877 8.2037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570709029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:09 Heat of formation + Delta-G solvation = -48.895918 kcal Electronic energy + Delta-G solvation = -29173.111539 eV Core-core repulsion = 25162.256181 eV Total energy + Delta-G solvation = -4010.855358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.77480 -40.70845 -39.97265 -38.68769 -36.02590 -35.52375 -34.39849 -33.27622 -33.23472 -31.82921 -29.55846 -28.60086 -27.44908 -26.73085 -25.60910 -24.92610 -23.15389 -21.89506 -21.64257 -20.51719 -19.75359 -18.96252 -18.14319 -17.85617 -16.92169 -16.69335 -16.55844 -16.43971 -16.22154 -16.16615 -15.88868 -15.62915 -15.29096 -15.04789 -14.84551 -14.57248 -14.33392 -14.04252 -13.92863 -13.73586 -13.58812 -13.48383 -13.23933 -13.06457 -13.00029 -12.79929 -12.52343 -12.48188 -12.42292 -12.18569 -12.14250 -11.74825 -11.43082 -11.28404 -10.90521 -10.37374 -10.25462 -10.08275 -9.99186 -9.89925 -9.18657 -8.46227 -5.94662 -0.33008 0.07095 1.38559 1.40283 1.50929 1.82919 2.06839 2.08082 2.27926 2.77995 2.80517 3.20946 3.39529 3.46916 3.58664 3.72758 3.79174 3.83320 3.97263 4.04888 4.21839 4.30141 4.35844 4.43183 4.50118 4.58769 4.62283 4.65571 4.66853 4.71457 4.77748 4.81423 4.84759 4.91533 5.02008 5.08742 5.23564 5.28505 5.33837 5.40716 5.48240 5.62962 5.88025 6.06991 6.21054 6.48225 6.60575 6.88223 7.12001 7.13468 7.57565 8.12736 8.71140 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008789 B = 0.003588 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3185.064215 B = 7801.133697 C = 9519.920221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.091 4.091 3 C 0.088 3.912 4 N -0.485 5.485 5 C 0.081 3.919 6 C -0.131 4.131 7 C -0.112 4.112 8 C 0.551 3.449 9 O -0.561 6.561 10 N -0.697 5.697 11 C 0.128 3.872 12 C 0.072 3.928 13 H 0.114 0.886 14 C -0.182 4.182 15 N -0.522 5.522 16 C 0.026 3.974 17 C 0.058 3.942 18 C 0.443 3.557 19 O -0.608 6.608 20 N -0.578 5.578 21 C -0.330 4.330 22 H 0.081 0.919 23 C -0.014 4.014 24 N -0.923 5.923 25 Si 0.990 3.010 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.269 1.269 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.187 0.813 33 H 0.185 0.815 34 H 0.155 0.845 35 H 0.413 0.587 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.053 0.947 43 H 0.035 0.965 44 H 0.092 0.908 45 H 0.068 0.932 46 H 0.393 0.607 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.148 3.931 -18.918 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.094 4.094 3 C -0.069 4.069 4 N -0.194 5.194 5 C -0.075 4.075 6 C -0.152 4.152 7 C -0.123 4.123 8 C 0.338 3.662 9 O -0.441 6.441 10 N -0.348 5.348 11 C 0.004 3.996 12 C -0.036 4.036 13 H 0.132 0.868 14 C -0.241 4.241 15 N -0.246 5.246 16 C -0.122 4.122 17 C -0.073 4.073 18 C 0.230 3.770 19 O -0.493 6.493 20 N -0.215 5.215 21 C -0.460 4.460 22 H 0.099 0.901 23 C -0.213 4.213 24 N -0.564 5.564 25 Si 0.814 3.186 26 H -0.199 1.199 27 H -0.197 1.197 28 H -0.195 1.195 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.204 0.796 33 H 0.202 0.798 34 H 0.173 0.827 35 H 0.251 0.749 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.110 0.890 45 H 0.086 0.914 46 H 0.226 0.774 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.727 5.381 -18.853 19.795 hybrid contribution -0.244 -1.713 1.307 2.168 sum -2.971 3.669 -17.546 18.170 Atomic orbital electron populations 1.20892 0.88517 1.04021 1.03097 1.21334 0.98984 0.92659 0.96385 1.23137 0.89660 0.98084 0.96014 1.67600 1.08889 1.32425 1.10463 1.23150 1.01818 0.86853 0.95683 1.22585 0.93496 1.01244 0.97826 1.20379 0.94598 0.93813 1.03495 1.18363 0.86704 0.84441 0.76651 1.90704 1.14596 1.87648 1.51184 1.45700 1.11873 1.05055 1.72176 1.21542 0.94454 0.81286 1.02301 1.22099 0.92683 0.93576 0.95276 0.86784 1.22370 1.01628 0.96778 1.03361 1.61746 1.08444 1.54448 0.99974 1.22435 0.93010 0.93640 1.03086 1.21694 0.96111 1.00670 0.88863 1.20751 0.89009 0.83305 0.83915 1.90457 1.23860 1.51320 1.83686 1.41961 1.16981 1.57724 1.04843 1.19616 0.98793 1.41436 0.86132 0.90123 1.26014 0.98188 0.96881 1.00231 1.69672 1.19266 1.46222 1.21240 0.85027 0.77974 0.78721 0.76880 1.19881 1.19681 1.19452 0.91431 0.89163 0.90336 0.79590 0.79783 0.82744 0.74884 0.92799 0.89372 0.91389 0.92698 0.89597 0.89761 0.92850 0.94635 0.89035 0.91403 0.77404 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 8.82 71.23 0.63 -1.72 16 2 C -0.09 -2.18 5.93 -19.50 -0.12 -2.29 16 3 C 0.09 1.91 10.83 84.68 0.92 2.83 16 4 N -0.48 -11.63 10.34 -196.01 -2.03 -13.66 16 5 C 0.08 1.76 11.17 84.67 0.95 2.71 16 6 C -0.13 -2.98 9.60 22.63 0.22 -2.76 16 7 C -0.11 -2.91 5.91 -19.88 -0.12 -3.02 16 8 C 0.55 15.50 7.74 86.88 0.67 16.17 16 9 O -0.56 -18.35 13.54 -3.76 -0.05 -18.40 16 10 N -0.70 -16.59 5.31 -465.69 -2.47 -19.06 16 11 C 0.13 2.73 4.91 86.38 0.42 3.16 16 12 C 0.07 1.35 2.45 44.92 0.11 1.46 16 13 H 0.11 1.66 8.05 -2.39 -0.02 1.64 16 14 C -0.18 -2.95 8.43 71.98 0.61 -2.34 16 15 N -0.52 -14.06 3.92 -901.62 -3.54 -17.60 16 16 C 0.03 0.69 9.10 127.69 1.16 1.85 16 17 C 0.06 1.91 4.33 85.56 0.37 2.28 16 18 C 0.44 20.40 7.43 87.66 0.65 21.05 16 19 O -0.61 -31.57 13.95 -3.09 -0.04 -31.61 16 20 N -0.58 -29.58 5.29 -306.98 -1.62 -31.20 16 21 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 24 N -0.92 -50.43 13.05 21.66 0.28 -50.15 16 25 Si 0.99 43.19 29.55 68.60 2.03 45.21 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 30 H 0.09 1.36 8.05 -2.39 -0.02 1.34 16 31 H 0.08 1.97 5.98 -2.39 -0.01 1.96 16 32 H 0.19 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.19 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.15 3.01 6.58 -2.91 -0.02 2.99 16 35 H 0.41 9.04 6.39 -92.71 -0.59 8.45 16 36 H 0.05 1.38 6.67 -2.39 -0.02 1.37 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.08 6.68 -2.39 -0.02 1.07 16 39 H 0.05 1.02 6.54 -2.39 -0.02 1.01 16 40 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.05 1.92 5.79 -2.39 -0.01 1.90 16 43 H 0.04 0.81 6.55 -2.39 -0.02 0.80 16 44 H 0.09 2.97 6.28 -2.39 -0.02 2.96 16 45 H 0.07 2.03 6.83 -2.39 -0.02 2.02 16 46 H 0.39 19.49 7.90 -92.71 -0.73 18.75 16 47 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -71.52 380.55 0.01 -71.51 By element: Atomic # 1 Polarization: 44.03 SS G_CDS: -0.30 Total: 43.73 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 7.75 Total: 21.24 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -9.38 Total: -131.67 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -0.09 Total: -50.02 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -71.52 0.01 -71.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570709029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.611 kcal (2) G-P(sol) polarization free energy of solvation -71.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds