Wall clock time and date at job start Tue Mar 31 2020 19:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32179 * 119.14106 * 2 1 4 4 C 1.32359 * 120.60529 * 180.02562 * 3 2 1 5 5 C 1.47497 * 120.50849 * 179.97438 * 4 3 2 6 6 O 1.21597 * 120.00219 * 179.97438 * 5 4 3 7 7 N 1.34779 * 120.00128 * 359.97438 * 5 4 3 8 8 C 1.47020 * 125.64758 * 0.05196 * 7 5 4 9 9 C 1.54325 * 107.27200 * 178.89951 * 8 7 5 10 10 C 1.55163 * 102.93978 * 337.80358 * 9 8 7 11 11 H 1.08992 * 111.04098 * 277.41456 * 10 9 8 12 12 C 1.53008 * 111.00044 * 153.57489 * 10 9 8 13 13 N 1.46498 * 109.46718 * 181.35191 * 12 10 9 14 14 C 1.46499 * 119.99985 * 90.00501 * 13 12 10 15 15 C 1.36939 * 119.99782 * 269.99829 * 13 12 10 16 16 H 1.08000 * 119.99892 * 334.66398 * 15 13 12 17 17 C 1.38818 * 119.99775 * 154.66743 * 15 13 12 18 18 N 1.31618 * 119.99903 * 4.06679 * 17 15 13 19 19 Si 1.86800 * 119.99547 * 184.06413 * 17 15 13 20 20 H 1.48493 * 109.47192 * 60.00281 * 19 17 15 21 21 H 1.48503 * 109.46739 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47316 * 299.99485 * 19 17 15 23 23 C 1.47421 * 125.64886 * 180.02562 * 7 5 4 24 24 C 1.46673 * 118.98088 * 0.25061 * 4 3 2 25 25 O 1.21857 * 120.78502 * 179.75343 * 24 4 3 26 26 N 1.35156 * 118.43191 * 359.48911 * 24 4 3 27 27 H 0.97004 * 120.36685 * 180.26032 * 26 24 4 28 28 C 1.34899 * 119.26389 * 0.53283 * 26 24 4 29 29 C 1.50699 * 119.50139 * 179.70217 * 28 26 24 30 30 H 1.09000 * 109.47170 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47382 * 119.99867 * 1 2 3 32 32 H 1.09002 * 109.47024 * 239.99881 * 1 2 3 33 33 H 1.09000 * 109.88317 * 298.31876 * 8 7 5 34 34 H 1.09002 * 109.88176 * 59.32778 * 8 7 5 35 35 H 1.09002 * 110.71760 * 219.44281 * 9 8 7 36 36 H 1.08993 * 110.71852 * 96.16734 * 9 8 7 37 37 H 1.08993 * 109.46948 * 61.35069 * 12 10 9 38 38 H 1.08998 * 109.46893 * 301.35327 * 12 10 9 39 39 H 1.09002 * 109.46914 * 264.47794 * 14 13 12 40 40 H 1.08997 * 109.47267 * 144.48487 * 14 13 12 41 41 H 1.08989 * 109.47447 * 24.47894 * 14 13 12 42 42 H 0.96996 * 119.99876 * 180.02562 * 18 17 15 43 43 H 1.09001 * 110.36626 * 85.32941 * 23 7 5 44 44 H 1.09002 * 110.46245 * 323.05505 * 23 7 5 45 45 H 1.08995 * 109.47319 * 269.97999 * 29 28 26 46 46 H 1.09003 * 109.46584 * 29.98099 * 29 28 26 47 47 H 1.08998 * 109.46728 * 149.98151 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1545 0.0000 4 6 3.4738 1.1883 -0.0005 5 6 4.1899 2.4778 -0.0011 6 8 5.4057 2.4981 -0.0011 7 7 3.4966 3.6336 -0.0016 8 6 2.0313 3.7539 -0.0006 9 6 1.6953 5.2599 0.0266 10 6 2.9857 5.8934 0.6106 11 1 2.9928 5.8340 1.6989 12 6 3.1463 7.3411 0.1421 13 7 4.3888 7.8951 0.6856 14 6 5.6382 7.7704 -0.0691 15 6 4.3823 8.5297 1.8991 16 1 3.4741 8.9851 2.2654 17 6 5.5430 8.5877 2.6582 18 7 6.6686 8.1036 2.1775 19 14 5.5074 9.3528 4.3620 20 1 4.5542 8.6050 5.2206 21 1 6.8653 9.2926 4.9601 22 1 5.0747 10.7697 4.2594 23 6 4.0820 4.9866 -0.0027 24 6 4.2170 -0.0762 -0.0067 25 8 5.4355 -0.0834 -0.0118 26 7 3.5185 -1.2332 -0.0010 27 1 3.9815 -2.0856 -0.0011 28 6 2.1702 -1.1895 -0.0009 29 6 1.3860 -2.4763 -0.0015 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 -0.3633 -0.5139 0.8900 33 1 1.6214 3.2988 -0.9022 34 1 1.6198 3.2639 0.8818 35 1 0.8423 5.4529 0.6773 36 1 1.5052 5.6308 -0.9805 37 1 2.3007 7.9324 0.4931 38 1 3.1819 7.3687 -0.9469 39 1 6.1890 6.8977 0.2818 40 1 6.2429 8.6651 0.0787 41 1 5.4124 7.6555 -1.1291 42 1 7.4796 8.1438 2.7081 43 1 4.3086 5.3010 -1.0215 44 1 4.9827 5.0127 0.6107 45 1 1.1965 -2.7860 -1.0292 46 1 1.9571 -3.2500 0.5117 47 1 0.4371 -2.3237 0.5128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664817484.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:25 Heat of formation + Delta-G solvation = 7.791209 kcal Electronic energy + Delta-G solvation = -29434.491242 eV Core-core repulsion = 25426.094022 eV Total energy + Delta-G solvation = -4008.397220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.99536 -39.51535 -38.22546 -37.22083 -35.70417 -35.16051 -33.46613 -32.05058 -30.51685 -29.55402 -28.50004 -27.23503 -26.06422 -25.26690 -24.96223 -23.47891 -22.41777 -20.96676 -19.95141 -19.53971 -18.87850 -18.21839 -16.80773 -16.57519 -16.52926 -15.97055 -15.60530 -15.18678 -14.68716 -14.44859 -14.41428 -14.13254 -13.64690 -13.52552 -13.48381 -13.41228 -13.37852 -12.79723 -12.57296 -12.40480 -12.32513 -12.12742 -12.07193 -11.73102 -11.56013 -11.31031 -11.28416 -10.86342 -10.68314 -10.60445 -10.35265 -10.09079 -10.05623 -9.96883 -9.78615 -9.67360 -9.35824 -8.40188 -8.37247 -8.11441 -6.62951 -5.62394 -3.09175 -0.11080 1.41252 2.09941 2.68306 3.17656 3.45233 3.50538 3.51669 3.63083 3.63788 3.92052 3.95420 4.29106 4.57365 4.67301 4.71320 4.88795 5.04795 5.08281 5.15968 5.22074 5.22792 5.35413 5.46866 5.56764 5.68956 5.73745 5.90705 5.96423 6.01868 6.07635 6.15576 6.18623 6.33840 6.37788 6.50035 6.64602 6.78004 6.82399 6.95451 7.09433 7.25153 7.52139 7.61296 7.85488 7.87779 7.99543 8.46991 8.53323 9.36623 9.98150 10.48143 11.42079 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017643 B = 0.002846 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.690223 B = 9834.705316 C =10361.427054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.033 4.033 3 N -0.348 5.348 4 C 0.020 3.980 5 C 0.585 3.415 6 O -0.508 6.508 7 N -0.598 5.598 8 C 0.118 3.882 9 C -0.134 4.134 10 C -0.117 4.117 11 H 0.084 0.916 12 C 0.165 3.835 13 N -0.605 5.605 14 C 0.165 3.835 15 C -0.256 4.256 16 H 0.067 0.933 17 C 0.006 3.994 18 N -0.906 5.906 19 Si 0.902 3.098 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.123 3.877 24 C 0.496 3.504 25 O -0.480 6.480 26 N -0.588 5.588 27 H 0.420 0.580 28 C 0.149 3.851 29 C -0.130 4.130 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.039 0.961 39 H 0.027 0.973 40 H 0.051 0.949 41 H -0.010 1.010 42 H 0.253 0.747 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.081 0.919 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.932 -22.582 -6.909 29.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.159 4.159 3 N -0.065 5.065 4 C -0.149 4.149 5 C 0.371 3.629 6 O -0.381 6.381 7 N -0.332 5.332 8 C -0.005 4.005 9 C -0.173 4.173 10 C -0.139 4.139 11 H 0.102 0.898 12 C 0.036 3.964 13 N -0.328 5.328 14 C 0.021 3.979 15 C -0.385 4.385 16 H 0.085 0.915 17 C -0.192 4.192 18 N -0.551 5.551 19 Si 0.731 3.269 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.211 1.211 23 C 0.002 3.998 24 C 0.287 3.713 25 O -0.350 6.350 26 N -0.224 5.224 27 H 0.260 0.740 28 C 0.033 3.967 29 C -0.188 4.188 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.008 0.992 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.774 -21.816 -6.848 28.358 hybrid contribution 0.648 -1.022 1.083 1.624 sum -16.126 -22.838 -5.765 28.546 Atomic orbital electron populations 1.20514 0.86974 1.04507 1.02110 1.20203 0.97943 0.85720 1.12036 1.67862 1.08416 1.28804 1.01432 1.23965 0.88855 0.93878 1.08200 1.16656 0.86081 0.81244 0.78955 1.90922 1.12065 1.85880 1.49265 1.48401 1.08021 1.05737 1.71056 1.22048 0.79985 0.96617 1.01808 1.22791 0.99023 0.93809 1.01661 1.23221 0.91656 0.97842 1.01167 0.89806 1.20766 0.90305 0.89686 0.95599 1.43937 1.03761 1.64542 1.20518 1.20917 0.87284 1.01362 0.88372 1.19124 0.96692 1.28434 0.94289 0.91512 1.25164 0.96421 0.99798 0.97844 1.70071 0.99150 1.49538 1.36322 0.86389 0.76653 0.78779 0.85030 1.21053 1.21700 1.21127 1.22362 0.98216 0.78346 1.00897 1.19085 0.88449 0.83932 0.79809 1.91077 1.11415 1.85192 1.47352 1.43733 1.06381 1.11937 1.60331 0.73970 1.21515 0.83532 0.98992 0.92615 1.21219 1.00929 0.91826 1.04781 0.89878 0.90935 0.90865 0.91524 0.91257 0.90531 0.91046 0.93326 0.94299 0.95418 0.93026 0.99164 0.93674 0.91894 0.89516 0.88475 0.90011 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 8.82 36.00 0.32 -0.06 16 2 C -0.03 -0.27 6.70 -83.18 -0.56 -0.83 16 3 N -0.35 -4.24 6.90 -4.85 -0.03 -4.27 16 4 C 0.02 0.31 6.92 -80.46 -0.56 -0.25 16 5 C 0.59 11.53 7.83 -12.49 -0.10 11.43 16 6 O -0.51 -12.24 15.76 -15.19 -0.24 -12.48 16 7 N -0.60 -10.79 3.33 -171.75 -0.57 -11.37 16 8 C 0.12 1.65 5.41 -3.06 -0.02 1.63 16 9 C -0.13 -1.82 6.42 -24.89 -0.16 -1.98 16 10 C -0.12 -2.15 3.29 -88.45 -0.29 -2.44 16 11 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 12 C 0.16 3.30 5.22 -4.04 -0.02 3.28 16 13 N -0.60 -15.33 2.85 -181.12 -0.52 -15.85 16 14 C 0.16 4.24 8.15 59.85 0.49 4.73 16 15 C -0.26 -7.08 9.67 -15.06 -0.15 -7.23 16 16 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 17 C 0.01 0.17 5.38 -17.43 -0.09 0.08 16 18 N -0.91 -27.21 10.12 55.49 0.56 -26.65 16 19 Si 0.90 22.38 29.56 -169.99 -5.02 17.36 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 C 0.12 2.45 5.37 -2.52 -0.01 2.44 16 24 C 0.50 7.35 7.93 -12.68 -0.10 7.25 16 25 O -0.48 -9.21 16.40 -15.43 -0.25 -9.47 16 26 N -0.59 -5.11 5.29 -9.45 -0.05 -5.16 16 27 H 0.42 2.37 8.81 -40.82 -0.36 2.01 16 28 C 0.15 0.94 6.78 -81.98 -0.56 0.39 16 29 C -0.13 -0.19 9.59 36.01 0.35 0.16 16 30 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.07 0.19 8.08 -51.93 -0.42 -0.22 16 32 H 0.07 0.21 7.36 -51.93 -0.38 -0.18 16 33 H 0.07 0.83 7.56 -51.93 -0.39 0.44 16 34 H 0.07 0.93 7.43 -51.93 -0.39 0.54 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.88 8.04 -51.93 -0.42 0.47 16 37 H 0.05 0.93 8.04 -51.93 -0.42 0.52 16 38 H 0.04 0.72 7.81 -51.93 -0.41 0.31 16 39 H 0.03 0.77 6.88 -51.93 -0.36 0.42 16 40 H 0.05 1.44 7.03 -51.93 -0.37 1.07 16 41 H -0.01 -0.23 7.83 -51.94 -0.41 -0.64 16 42 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.06 1.24 8.00 -51.93 -0.42 0.82 16 44 H 0.09 2.10 7.54 -51.93 -0.39 1.71 16 45 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 46 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 47 H 0.10 0.03 6.44 -51.93 -0.33 -0.31 16 LS Contribution 378.68 15.07 5.71 5.71 Total: -1.00 -38.13 378.68 -8.99 -47.12 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -7.11 Total: -3.53 kcal Atomic # 6 Polarization: 20.05 SS G_CDS: -1.46 Total: 18.59 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: -0.61 Total: -63.30 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.49 Total: -21.95 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.13 -8.99 -47.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664817484.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.907 kcal (2) G-P(sol) polarization free energy of solvation -38.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds