Wall clock time and date at job start Tue Mar 31 2020 19:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32179 * 119.14106 * 2 1 4 4 C 1.32359 * 120.60529 * 180.02562 * 3 2 1 5 5 C 1.47497 * 120.50849 * 179.97438 * 4 3 2 6 6 O 1.21597 * 120.00219 * 179.97438 * 5 4 3 7 7 N 1.34779 * 120.00128 * 359.97438 * 5 4 3 8 8 C 1.47020 * 125.64758 * 0.05196 * 7 5 4 9 9 C 1.54325 * 107.27200 * 178.89951 * 8 7 5 10 10 C 1.55163 * 102.93978 * 337.80358 * 9 8 7 11 11 H 1.08992 * 111.04098 * 277.41456 * 10 9 8 12 12 C 1.53008 * 111.00044 * 153.57489 * 10 9 8 13 13 N 1.46498 * 109.46718 * 181.35191 * 12 10 9 14 14 C 1.46499 * 119.99985 * 90.00501 * 13 12 10 15 15 C 1.36939 * 119.99782 * 269.99829 * 13 12 10 16 16 H 1.08000 * 119.99892 * 334.66398 * 15 13 12 17 17 C 1.38818 * 119.99775 * 154.66743 * 15 13 12 18 18 N 1.31618 * 119.99903 * 4.06679 * 17 15 13 19 19 Si 1.86800 * 119.99547 * 184.06413 * 17 15 13 20 20 H 1.48493 * 109.47192 * 60.00281 * 19 17 15 21 21 H 1.48503 * 109.46739 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47316 * 299.99485 * 19 17 15 23 23 C 1.47421 * 125.64886 * 180.02562 * 7 5 4 24 24 C 1.46673 * 118.98088 * 0.25061 * 4 3 2 25 25 O 1.21857 * 120.78502 * 179.75343 * 24 4 3 26 26 N 1.35156 * 118.43191 * 359.48911 * 24 4 3 27 27 H 0.97004 * 120.36685 * 180.26032 * 26 24 4 28 28 C 1.34899 * 119.26389 * 0.53283 * 26 24 4 29 29 C 1.50699 * 119.50139 * 179.70217 * 28 26 24 30 30 H 1.09000 * 109.47170 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47382 * 119.99867 * 1 2 3 32 32 H 1.09002 * 109.47024 * 239.99881 * 1 2 3 33 33 H 1.09000 * 109.88317 * 298.31876 * 8 7 5 34 34 H 1.09002 * 109.88176 * 59.32778 * 8 7 5 35 35 H 1.09002 * 110.71760 * 219.44281 * 9 8 7 36 36 H 1.08993 * 110.71852 * 96.16734 * 9 8 7 37 37 H 1.08993 * 109.46948 * 61.35069 * 12 10 9 38 38 H 1.08998 * 109.46893 * 301.35327 * 12 10 9 39 39 H 1.09002 * 109.46914 * 264.47794 * 14 13 12 40 40 H 1.08997 * 109.47267 * 144.48487 * 14 13 12 41 41 H 1.08989 * 109.47447 * 24.47894 * 14 13 12 42 42 H 0.96996 * 119.99876 * 180.02562 * 18 17 15 43 43 H 1.09001 * 110.36626 * 85.32941 * 23 7 5 44 44 H 1.09002 * 110.46245 * 323.05505 * 23 7 5 45 45 H 1.08995 * 109.47319 * 269.97999 * 29 28 26 46 46 H 1.09003 * 109.46584 * 29.98099 * 29 28 26 47 47 H 1.08998 * 109.46728 * 149.98151 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1545 0.0000 4 6 3.4738 1.1883 -0.0005 5 6 4.1899 2.4778 -0.0011 6 8 5.4057 2.4981 -0.0011 7 7 3.4966 3.6336 -0.0016 8 6 2.0313 3.7539 -0.0006 9 6 1.6953 5.2599 0.0266 10 6 2.9857 5.8934 0.6106 11 1 2.9928 5.8340 1.6989 12 6 3.1463 7.3411 0.1421 13 7 4.3888 7.8951 0.6856 14 6 5.6382 7.7704 -0.0691 15 6 4.3823 8.5297 1.8991 16 1 3.4741 8.9851 2.2654 17 6 5.5430 8.5877 2.6582 18 7 6.6686 8.1036 2.1775 19 14 5.5074 9.3528 4.3620 20 1 4.5542 8.6050 5.2206 21 1 6.8653 9.2926 4.9601 22 1 5.0747 10.7697 4.2594 23 6 4.0820 4.9866 -0.0027 24 6 4.2170 -0.0762 -0.0067 25 8 5.4355 -0.0834 -0.0118 26 7 3.5185 -1.2332 -0.0010 27 1 3.9815 -2.0856 -0.0011 28 6 2.1702 -1.1895 -0.0009 29 6 1.3860 -2.4763 -0.0015 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 -0.3633 -0.5139 0.8900 33 1 1.6214 3.2988 -0.9022 34 1 1.6198 3.2639 0.8818 35 1 0.8423 5.4529 0.6773 36 1 1.5052 5.6308 -0.9805 37 1 2.3007 7.9324 0.4931 38 1 3.1819 7.3687 -0.9469 39 1 6.1890 6.8977 0.2818 40 1 6.2429 8.6651 0.0787 41 1 5.4124 7.6555 -1.1291 42 1 7.4796 8.1438 2.7081 43 1 4.3086 5.3010 -1.0215 44 1 4.9827 5.0127 0.6107 45 1 1.1965 -2.7860 -1.0292 46 1 1.9571 -3.2500 0.5117 47 1 0.4371 -2.3237 0.5128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664817484.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:24 Heat of formation + Delta-G solvation = -20.669553 kcal Electronic energy + Delta-G solvation = -29435.725393 eV Core-core repulsion = 25426.094022 eV Total energy + Delta-G solvation = -4009.631371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.91202 -40.90390 -39.30034 -38.70881 -37.06438 -36.60186 -34.25851 -33.73960 -32.23952 -30.17793 -29.86303 -28.34543 -27.89711 -26.96745 -25.60403 -24.81712 -23.53074 -22.75513 -21.17783 -20.97937 -19.82618 -19.24010 -18.67481 -17.93329 -17.54998 -17.17401 -16.88628 -16.73651 -16.42238 -15.72080 -15.41110 -15.09530 -15.01890 -14.91044 -14.48144 -14.34833 -14.12699 -13.98312 -13.84950 -13.74997 -13.60617 -13.12795 -13.07094 -12.80011 -12.78584 -12.69518 -12.57868 -12.45877 -12.35363 -12.33210 -12.07657 -11.96922 -11.74612 -11.58941 -11.40769 -11.32587 -10.58289 -10.47686 -9.71170 -9.07208 -8.72985 -7.80516 -5.28585 -0.98468 0.49355 1.19355 1.44620 1.48284 1.50615 1.54331 1.99165 2.50950 2.51855 2.88145 2.98329 3.33821 3.41377 3.56635 3.74274 3.81198 3.84239 3.99604 4.15073 4.39385 4.55009 4.57677 4.65922 4.69405 4.72533 4.78604 4.86672 4.92532 4.96410 4.98696 5.02867 5.06164 5.08033 5.11899 5.20803 5.25308 5.35248 5.38801 5.42443 5.55020 5.55781 5.66710 5.81640 6.37115 6.38163 6.48715 6.59050 7.07625 7.19410 7.91791 8.36827 9.23403 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017643 B = 0.002846 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.690223 B = 9834.705316 C =10361.427054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.049 4.049 3 N -0.328 5.328 4 C -0.063 4.063 5 C 0.576 3.424 6 O -0.580 6.580 7 N -0.603 5.603 8 C 0.121 3.879 9 C -0.115 4.115 10 C -0.108 4.108 11 H 0.053 0.947 12 C 0.162 3.838 13 N -0.622 5.622 14 C 0.184 3.816 15 C -0.257 4.257 16 H 0.080 0.920 17 C -0.059 4.059 18 N -0.943 5.943 19 Si 0.968 3.032 20 H -0.277 1.277 21 H -0.302 1.302 22 H -0.271 1.271 23 C 0.130 3.870 24 C 0.490 3.510 25 O -0.546 6.546 26 N -0.563 5.563 27 H 0.438 0.562 28 C 0.201 3.799 29 C -0.132 4.132 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.061 0.939 39 H -0.010 1.010 40 H 0.022 0.978 41 H 0.020 0.980 42 H 0.243 0.757 43 H 0.061 0.939 44 H 0.025 0.975 45 H 0.129 0.871 46 H 0.103 0.897 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.171 -25.604 -7.351 35.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.181 4.181 3 N -0.046 5.046 4 C -0.223 4.223 5 C 0.365 3.635 6 O -0.459 6.459 7 N -0.336 5.336 8 C 0.000 4.000 9 C -0.153 4.153 10 C -0.130 4.130 11 H 0.072 0.928 12 C 0.036 3.964 13 N -0.345 5.345 14 C 0.039 3.961 15 C -0.387 4.387 16 H 0.097 0.903 17 C -0.253 4.253 18 N -0.590 5.590 19 Si 0.796 3.204 20 H -0.203 1.203 21 H -0.228 1.228 22 H -0.196 1.196 23 C 0.008 3.992 24 C 0.285 3.715 25 O -0.424 6.424 26 N -0.198 5.198 27 H 0.282 0.718 28 C 0.081 3.919 29 C -0.189 4.189 30 H 0.093 0.907 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.009 0.991 40 H 0.041 0.959 41 H 0.038 0.962 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.146 0.854 46 H 0.122 0.878 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -23.080 -24.810 -7.302 34.663 hybrid contribution 2.240 -0.440 1.151 2.557 sum -20.840 -25.250 -6.151 33.312 Atomic orbital electron populations 1.20725 0.83289 1.05064 1.04859 1.21172 1.00092 0.85109 1.11686 1.67711 1.06722 1.31258 0.98899 1.22851 0.89878 0.91959 1.17576 1.17378 0.85715 0.82995 0.77381 1.90847 1.15137 1.87180 1.52705 1.48497 1.09739 1.04545 1.70773 1.22258 0.77261 0.97269 1.03197 1.22790 0.96843 0.92496 1.03202 1.22945 0.94015 0.96788 0.99296 0.92849 1.20994 0.88376 0.90292 0.96759 1.44190 1.05033 1.65074 1.20189 1.20539 0.87386 0.98261 0.89914 1.19557 0.96732 1.27612 0.94777 0.90273 1.25990 0.96310 1.01332 1.01635 1.70305 0.99532 1.51806 1.37386 0.85326 0.76025 0.78573 0.80470 1.20251 1.22824 1.19608 1.22062 0.96898 0.80706 0.99542 1.19036 0.87786 0.85205 0.79508 1.91028 1.13941 1.86181 1.51202 1.43691 1.07586 1.11247 1.57260 0.71825 1.22616 0.82299 1.01338 0.85606 1.21626 1.01289 0.88767 1.07228 0.90657 0.87946 0.88135 0.89335 0.90496 0.87539 0.88628 0.91452 0.92077 0.99122 0.95897 0.96167 0.94741 0.92101 0.95651 0.85358 0.87804 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 8.82 71.24 0.63 0.39 16 2 C -0.05 -0.61 6.70 42.03 0.28 -0.33 16 3 N -0.33 -7.55 6.90 -169.25 -1.17 -8.71 16 4 C -0.06 -2.09 6.92 43.71 0.30 -1.79 16 5 C 0.58 25.16 7.83 86.68 0.68 25.84 16 6 O -0.58 -31.86 15.76 15.55 0.25 -31.62 16 7 N -0.60 -23.28 3.33 -815.54 -2.71 -26.00 16 8 C 0.12 3.25 5.41 86.73 0.47 3.72 16 9 C -0.12 -2.83 6.42 31.79 0.20 -2.63 16 10 C -0.11 -4.05 3.29 -9.39 -0.03 -4.08 16 11 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 12 C 0.16 6.40 5.22 86.38 0.45 6.85 16 13 N -0.62 -32.45 2.85 -726.95 -2.07 -34.52 16 14 C 0.18 10.05 8.15 127.77 1.04 11.09 16 15 C -0.26 -14.51 9.67 84.03 0.81 -13.69 16 16 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 17 C -0.06 -3.47 5.38 84.86 0.46 -3.01 16 18 N -0.94 -60.35 10.12 21.65 0.22 -60.13 16 19 Si 0.97 47.48 29.56 68.60 2.03 49.51 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.30 -15.18 7.11 99.48 0.71 -14.48 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 23 C 0.13 5.65 5.37 86.86 0.47 6.12 16 24 C 0.49 15.31 7.93 86.39 0.68 16.00 16 25 O -0.55 -23.20 16.40 14.73 0.24 -22.96 16 26 N -0.56 -8.61 5.29 -301.76 -1.60 -10.21 16 27 H 0.44 3.77 8.81 -92.71 -0.82 2.95 16 28 C 0.20 1.58 6.78 41.61 0.28 1.86 16 29 C -0.13 0.62 9.59 71.24 0.68 1.31 16 30 H 0.07 0.43 8.10 -2.39 -0.02 0.41 16 31 H 0.10 -0.23 8.08 -2.39 -0.02 -0.24 16 32 H 0.10 -0.18 7.36 -2.39 -0.02 -0.19 16 33 H 0.09 2.00 7.56 -2.39 -0.02 1.99 16 34 H 0.08 1.94 7.43 -2.39 -0.02 1.93 16 35 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.10 1.97 8.04 -2.39 -0.02 1.95 16 37 H 0.07 2.43 8.04 -2.39 -0.02 2.41 16 38 H 0.06 2.15 7.81 -2.39 -0.02 2.13 16 39 H -0.01 -0.59 6.88 -2.39 -0.02 -0.61 16 40 H 0.02 1.34 7.03 -2.39 -0.02 1.32 16 41 H 0.02 0.95 7.83 -2.39 -0.02 0.93 16 42 H 0.24 15.35 8.31 -92.71 -0.77 14.58 16 43 H 0.06 2.59 8.00 -2.39 -0.02 2.57 16 44 H 0.02 1.38 7.54 -2.39 -0.02 1.36 16 45 H 0.13 -1.04 8.14 -2.39 -0.02 -1.05 16 46 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 47 H 0.13 -1.09 6.44 -2.39 -0.02 -1.11 16 Total: -1.00 -99.33 378.68 2.78 -96.55 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: 0.18 Total: 0.44 kcal Atomic # 6 Polarization: 40.23 SS G_CDS: 7.41 Total: 47.64 kcal Atomic # 7 Polarization: -132.24 SS G_CDS: -7.33 Total: -139.57 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: 0.49 Total: -54.57 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -99.33 2.78 -96.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664817484.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.884 kcal (2) G-P(sol) polarization free energy of solvation -99.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds