Wall clock time and date at job start Tue Mar 31 2020 19:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 110.78282 * 2 1 4 4 C 1.54428 * 110.72232 * 236.70635 * 2 1 3 5 5 N 1.47026 * 107.27742 * 263.84815 * 4 2 1 6 6 C 1.36939 * 125.64509 * 181.02726 * 5 4 2 7 7 H 1.07999 * 120.00364 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99929 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99916 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99946 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47340 * 90.00183 * 10 8 6 12 12 H 1.48500 * 109.47266 * 210.00682 * 10 8 6 13 13 H 1.48504 * 109.47301 * 330.00186 * 10 8 6 14 14 C 1.47418 * 108.70660 * 1.06061 * 5 4 2 15 15 C 1.54913 * 104.83130 * 335.87362 * 14 5 4 16 16 H 1.08999 * 111.00183 * 155.12109 * 15 14 5 17 17 N 1.46501 * 111.00311 * 278.93147 * 15 14 5 18 18 C 1.34781 * 119.99812 * 270.42162 * 17 15 14 19 19 O 1.21273 * 120.00146 * 359.97438 * 18 17 15 20 20 C 1.50706 * 119.99548 * 180.02562 * 18 17 15 21 21 C 1.52998 * 109.46668 * 179.97438 * 20 18 17 22 22 N 1.46501 * 109.46932 * 179.97438 * 21 20 18 23 23 C 1.34746 * 120.04180 * 90.00012 * 22 21 20 24 24 N 1.30640 * 121.49512 * 180.02562 * 23 22 21 25 25 C 1.33522 * 121.50298 * 359.97438 * 24 23 22 26 26 C 1.36201 * 119.90966 * 0.02562 * 25 24 23 27 27 C 1.35023 * 120.04193 * 270.28806 * 22 21 20 28 28 O 1.21976 * 120.71167 * 359.97438 * 27 22 21 29 29 H 1.09003 * 109.47210 * 296.76399 * 1 2 3 30 30 H 1.09006 * 109.46679 * 56.75915 * 1 2 3 31 31 H 1.08994 * 109.47470 * 176.76155 * 1 2 3 32 32 H 1.09003 * 109.47432 * 183.23442 * 3 2 1 33 33 H 1.08996 * 109.47457 * 303.23961 * 3 2 1 34 34 H 1.09008 * 109.47304 * 63.23609 * 3 2 1 35 35 H 1.09001 * 109.87441 * 144.43253 * 4 2 1 36 36 H 1.08990 * 110.01278 * 23.34433 * 4 2 1 37 37 H 0.97005 * 119.99905 * 179.97438 * 9 8 6 38 38 H 1.09005 * 110.37073 * 217.03342 * 14 5 4 39 39 H 1.09000 * 110.46069 * 94.75741 * 14 5 4 40 40 H 0.96992 * 119.99920 * 90.42072 * 17 15 14 41 41 H 1.08998 * 109.47024 * 59.99980 * 20 18 17 42 42 H 1.08991 * 109.47252 * 299.99779 * 20 18 17 43 43 H 1.08998 * 109.47296 * 60.00292 * 21 20 18 44 44 H 1.09005 * 109.47397 * 300.00107 * 21 20 18 45 45 H 1.07999 * 119.25691 * 0.04654 * 23 22 21 46 46 H 1.07996 * 120.04285 * 180.02562 * 25 24 23 47 47 H 1.08002 * 120.70033 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0764 -0.7929 -1.2073 5 7 2.3717 -2.1546 -0.7380 6 6 2.8933 -3.1658 -1.5000 7 1 3.1237 -2.9938 -2.5410 8 6 3.1258 -4.4119 -0.9344 9 7 2.8445 -4.6217 0.3341 10 14 3.8367 -5.7915 -1.9740 11 1 5.3192 -5.7558 -1.8972 12 1 3.3460 -7.0977 -1.4657 13 1 3.4098 -5.6179 -3.3857 14 6 2.0124 -2.2513 0.6885 15 6 2.0789 -0.7954 1.2138 16 1 1.4399 -0.6657 2.0872 17 7 3.4595 -0.4083 1.5145 18 6 3.9681 -0.6264 2.7434 19 8 3.2828 -1.1428 3.6004 20 6 5.3881 -0.2276 3.0528 21 6 5.7122 -0.5820 4.5055 22 7 7.0928 -0.1949 4.8062 23 6 7.3592 1.0365 5.2840 24 7 8.5795 1.4117 5.5612 25 6 9.6187 0.5922 5.3843 26 6 9.4170 -0.6663 4.9041 27 6 8.1004 -1.0695 4.5993 28 8 7.8762 -2.1862 4.1628 29 1 -0.3634 0.4628 0.9176 30 1 -0.3633 0.5634 -0.8596 31 1 -0.3634 -1.0259 -0.0580 32 1 3.1611 1.4061 -0.0580 33 1 1.6752 1.9700 -0.8595 34 1 1.7691 1.9344 0.9176 35 1 2.9875 -0.3228 -1.5777 36 1 1.3290 -0.8278 -1.9998 37 1 3.0066 -5.4927 0.7293 38 1 2.7289 -2.8789 1.2185 39 1 1.0041 -2.6496 0.8013 40 1 4.0074 0.0051 0.8291 41 1 5.5038 0.8464 2.9067 42 1 6.0681 -0.7601 2.3881 43 1 5.5963 -1.6559 4.6520 44 1 5.0321 -0.0491 5.1700 45 1 6.5456 1.7290 5.4417 46 1 10.6177 0.9267 5.6216 47 1 10.2483 -1.3397 4.7557 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675480350.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:06 Heat of formation + Delta-G solvation = 0.752362 kcal Electronic energy + Delta-G solvation = -29478.019698 eV Core-core repulsion = 25469.317250 eV Total energy + Delta-G solvation = -4008.702447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.99081 -39.79500 -38.08517 -37.74168 -35.83243 -33.84935 -33.08328 -31.44431 -31.18419 -30.70302 -28.19978 -26.97472 -25.78135 -25.57696 -24.60428 -23.50996 -22.69679 -20.56472 -19.80195 -18.70840 -18.57725 -17.84386 -17.27159 -16.72916 -16.42243 -16.08145 -15.73238 -15.38023 -14.77541 -14.59720 -14.52310 -13.91307 -13.90184 -13.71422 -13.42310 -13.23765 -13.16529 -13.06143 -12.79012 -12.60548 -12.19686 -11.95171 -11.77458 -11.44899 -11.30268 -11.19217 -11.00488 -10.77838 -10.74876 -10.44726 -10.37727 -10.23114 -10.21331 -9.98910 -9.82474 -9.69537 -9.51406 -8.72835 -8.67836 -8.40562 -6.81404 -5.62602 -3.05830 0.36921 1.65109 2.18461 2.95879 3.36628 3.41712 3.46122 3.49062 3.59986 3.79526 4.28204 4.38345 4.49727 4.60709 4.68903 4.93226 4.98482 5.04449 5.19163 5.22949 5.27180 5.30370 5.51878 5.52623 5.59874 5.62855 5.72247 5.76186 5.83685 5.98976 6.06596 6.09907 6.14532 6.21571 6.37399 6.38576 6.46346 6.56896 6.67699 6.71092 6.94896 7.46576 7.48655 7.62531 7.67977 7.85232 7.95794 8.39137 8.59358 9.22536 9.84165 10.47574 11.40077 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010853 B = 0.003470 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.325200 B = 8066.982026 C = 9889.184718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.130 4.130 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.228 4.228 7 H 0.076 0.924 8 C -0.007 4.007 9 N -0.916 5.916 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.145 3.855 15 C 0.124 3.876 16 H 0.087 0.913 17 N -0.699 5.699 18 C 0.521 3.479 19 O -0.544 6.544 20 C -0.156 4.156 21 C 0.104 3.896 22 N -0.519 5.519 23 C 0.376 3.624 24 N -0.549 5.549 25 C 0.146 3.854 26 C -0.287 4.287 27 C 0.510 3.490 28 O -0.523 6.523 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.020 0.980 36 H 0.023 0.977 37 H 0.253 0.747 38 H 0.113 0.887 39 H 0.020 0.980 40 H 0.397 0.603 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.204 0.796 46 H 0.165 0.835 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.455 17.434 8.718 20.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.188 4.188 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.356 4.356 7 H 0.094 0.906 8 C -0.203 4.203 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.208 1.208 14 C 0.020 3.980 15 C 0.019 3.981 16 H 0.105 0.895 17 N -0.348 5.348 18 C 0.306 3.694 19 O -0.422 6.422 20 C -0.197 4.197 21 C -0.018 4.018 22 N -0.236 5.236 23 C 0.092 3.908 24 N -0.272 5.272 25 C 0.008 3.992 26 C -0.312 4.312 27 C 0.309 3.691 28 O -0.400 6.400 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.041 0.959 37 H 0.064 0.936 38 H 0.131 0.869 39 H 0.038 0.962 40 H 0.231 0.769 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.133 0.867 44 H 0.125 0.875 45 H 0.220 0.780 46 H 0.182 0.818 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.162 16.760 9.335 20.150 hybrid contribution 0.590 -1.344 -1.352 1.996 sum 6.752 15.416 7.983 18.627 Atomic orbital electron populations 1.21685 0.93527 1.02529 1.00857 1.21855 0.96021 0.94512 0.96439 1.21709 1.00324 0.95458 1.01268 1.21424 0.96418 0.86852 0.93639 1.44447 1.74245 1.06651 1.07332 1.19008 1.34487 0.89246 0.92882 0.90611 1.24786 1.01567 0.97632 0.96337 1.69789 1.53368 1.22405 1.10802 0.86124 0.78792 0.81798 0.79059 1.21617 1.21634 1.20795 1.22308 1.00128 0.90443 0.85137 1.22537 0.81134 0.98238 0.96236 0.89502 1.45768 1.14915 1.61917 1.12208 1.19961 0.87914 0.78807 0.82731 1.90709 1.61178 1.43359 1.46954 1.21923 0.96610 1.03378 0.97762 1.21834 0.78181 1.05546 0.96246 1.46979 1.11463 1.13899 1.51286 1.25086 0.96291 0.84199 0.85259 1.68414 0.97891 1.35363 1.25504 1.22643 0.98072 0.89314 0.89176 1.22991 0.97040 1.00023 1.11143 1.17423 0.85754 0.85444 0.80479 1.91044 1.84197 1.19196 1.45539 0.93072 0.92708 0.91730 0.92989 0.92733 0.92839 0.96186 0.95883 0.93630 0.86945 0.96201 0.76873 0.88759 0.87993 0.86729 0.87519 0.77990 0.81788 0.82824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.41 37.16 0.31 -1.55 16 2 C -0.09 -1.38 0.81 -152.62 -0.12 -1.50 16 3 C -0.13 -1.58 8.08 37.16 0.30 -1.28 16 4 C 0.14 2.80 6.41 -3.01 -0.02 2.78 16 5 N -0.60 -14.86 3.39 -170.01 -0.58 -15.43 16 6 C -0.23 -6.30 10.27 -15.06 -0.15 -6.46 16 7 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -27.37 10.09 55.49 0.56 -26.81 16 10 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.15 3.52 5.27 -2.53 -0.01 3.51 16 15 C 0.12 2.28 2.61 -65.78 -0.17 2.10 16 16 H 0.09 1.62 7.53 -51.93 -0.39 1.23 16 17 N -0.70 -11.34 4.62 -51.73 -0.24 -11.58 16 18 C 0.52 8.37 7.83 -10.98 -0.09 8.28 16 19 O -0.54 -10.61 15.67 5.56 0.09 -10.52 16 20 C -0.16 -1.83 6.02 -27.88 -0.17 -2.00 16 21 C 0.10 1.16 4.66 -4.04 -0.02 1.15 16 22 N -0.52 -5.38 2.57 -121.11 -0.31 -5.69 16 23 C 0.38 2.76 11.48 -90.53 -1.04 1.73 16 24 N -0.55 -4.68 10.39 -14.48 -0.15 -4.83 16 25 C 0.15 1.20 11.20 -17.55 -0.20 1.00 16 26 C -0.29 -3.01 10.07 -39.26 -0.40 -3.40 16 27 C 0.51 6.94 7.45 -15.09 -0.11 6.83 16 28 O -0.52 -9.66 16.79 4.94 0.08 -9.57 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.08 7.58 -51.93 -0.39 0.69 16 32 H 0.05 0.60 6.42 -51.93 -0.33 0.26 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 35 H 0.02 0.39 7.77 -51.93 -0.40 -0.02 16 36 H 0.02 0.46 7.85 -51.93 -0.41 0.05 16 37 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.11 3.20 5.88 -51.93 -0.31 2.90 16 39 H 0.02 0.53 7.81 -51.93 -0.41 0.12 16 40 H 0.40 5.76 7.03 -40.82 -0.29 5.48 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.11 1.69 7.42 -51.93 -0.39 1.31 16 44 H 0.11 0.91 7.97 -51.93 -0.41 0.49 16 45 H 0.20 0.61 8.03 -52.49 -0.42 0.19 16 46 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 382.84 15.07 5.77 5.77 Total: -1.00 -36.39 382.84 -8.86 -45.25 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -7.08 Total: 4.99 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -1.98 Total: 10.89 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -0.72 Total: -64.33 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: 0.17 Total: -20.10 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.39 -8.86 -45.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675480350.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.998 kcal (2) G-P(sol) polarization free energy of solvation -36.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds