Wall clock time and date at job start Tue Mar 31 2020 19:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38164 * 120.50401 * 2 1 4 4 N 1.31796 * 120.89628 * 179.97438 * 3 2 1 5 5 C 1.31827 * 122.05278 * 0.02562 * 4 3 2 6 6 C 1.38123 * 120.89143 * 0.02562 * 5 4 3 7 7 C 1.39803 * 120.49720 * 180.02562 * 2 1 3 8 8 C 1.48152 * 120.92134 * 0.04401 * 7 2 1 9 9 O 1.21511 * 119.99920 * 353.89958 * 8 7 2 10 10 N 1.34773 * 119.99698 * 173.89896 * 8 7 2 11 11 C 1.46507 * 119.99969 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.46852 * 34.99540 * 11 10 8 13 13 C 1.53000 * 109.46900 * 275.00325 * 11 10 8 14 14 C 1.52991 * 109.47011 * 155.00451 * 11 10 8 15 15 C 1.53006 * 109.47115 * 294.99369 * 14 11 10 16 16 N 1.46905 * 109.47127 * 179.97438 * 15 14 11 17 17 C 1.46902 * 110.99756 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.46790 * 180.02562 * 17 16 15 19 19 O 1.21289 * 120.00492 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99707 * 180.02562 * 18 17 16 21 21 C 1.37103 * 120.00152 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99515 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99994 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00216 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99702 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47292 * 90.00384 * 25 23 21 27 27 H 1.48498 * 109.47099 * 210.00465 * 25 23 21 28 28 H 1.48506 * 109.47170 * 330.00238 * 25 23 21 29 29 H 1.08996 * 109.47098 * 263.66644 * 1 2 3 30 30 H 1.09003 * 109.46472 * 23.66726 * 1 2 3 31 31 H 1.09001 * 109.46920 * 143.66642 * 1 2 3 32 32 H 1.08002 * 119.55046 * 0.02562 * 3 2 1 33 33 H 1.07996 * 119.55351 * 179.97438 * 5 4 3 34 34 H 1.08006 * 120.49790 * 179.97438 * 6 5 4 35 35 H 0.97002 * 120.00410 * 0.02562 * 10 8 7 36 36 H 1.09008 * 109.46966 * 299.99660 * 13 11 10 37 37 H 1.08993 * 109.47376 * 59.99390 * 13 11 10 38 38 H 1.08999 * 109.47492 * 180.02562 * 13 11 10 39 39 H 1.08999 * 109.48054 * 55.00053 * 14 11 10 40 40 H 1.09002 * 109.46994 * 175.00057 * 14 11 10 41 41 H 1.08994 * 109.47323 * 300.00735 * 15 14 11 42 42 H 1.09002 * 109.46628 * 60.00464 * 15 14 11 43 43 H 1.00894 * 110.99966 * 303.95739 * 16 15 14 44 44 H 1.08998 * 109.46974 * 300.00587 * 17 16 15 45 45 H 1.09004 * 109.46439 * 60.00478 * 17 16 15 46 46 H 0.97000 * 119.99969 * 359.97438 * 20 18 17 47 47 H 0.97003 * 119.99871 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2084 1.1904 0.0000 4 7 3.5263 1.1994 0.0005 5 6 4.2335 0.0869 0.0005 6 6 3.6137 -1.1474 -0.0005 7 6 2.2166 -1.2046 -0.0005 8 6 1.5078 -2.5056 -0.0021 9 8 0.2982 -2.5386 0.1089 10 7 2.2047 -3.6524 -0.1266 11 6 1.5038 -4.9390 -0.1288 12 1 0.5404 -4.8270 -0.6262 13 6 1.2826 -5.4015 1.3128 14 6 2.3452 -5.9769 -0.8740 15 6 2.4617 -5.5771 -2.3463 16 7 3.2702 -6.5734 -3.0617 17 6 3.4043 -6.2211 -4.4816 18 6 4.2374 -7.2639 -5.1813 19 8 4.6759 -8.2079 -4.5586 20 7 4.4952 -7.1475 -6.4990 21 6 5.2527 -8.0965 -7.1357 22 1 5.6431 -8.9370 -6.5812 23 6 5.5181 -7.9767 -8.4944 24 7 5.0435 -6.9537 -9.1689 25 14 6.5508 -9.2693 -9.3617 26 1 5.6660 -10.3423 -9.8823 27 1 7.2842 -8.6416 -10.4901 28 1 7.5232 -9.8516 -8.4022 29 1 -0.3633 -0.1134 1.0214 30 1 -0.3632 0.9413 -0.4126 31 1 -0.3633 -0.8279 -0.6089 32 1 1.6693 2.1262 0.0004 33 1 5.3121 0.1414 0.0005 34 1 4.1994 -2.0549 -0.0009 35 1 3.1703 -3.6261 -0.2149 36 1 2.2460 -5.5134 1.8103 37 1 0.6833 -4.6621 1.8437 38 1 0.7615 -6.3589 1.3113 39 1 3.3399 -6.0246 -0.4307 40 1 1.8671 -6.9535 -0.7995 41 1 1.4672 -5.5294 -2.7896 42 1 2.9399 -4.6004 -2.4208 43 1 4.1753 -6.6824 -2.6295 44 1 2.4164 -6.1781 -4.9401 45 1 3.8888 -5.2487 -4.5704 46 1 4.1443 -6.3928 -6.9971 47 1 5.2290 -6.8700 -10.1174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699099926.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:13 Heat of formation + Delta-G solvation = -69.167323 kcal Electronic energy + Delta-G solvation = -27576.173025 eV Core-core repulsion = 23564.438633 eV Total energy + Delta-G solvation = -4011.734392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.83028 -40.32547 -40.11532 -38.02068 -36.36380 -35.74039 -34.42580 -33.80498 -33.27291 -32.02212 -30.30711 -28.35209 -27.79555 -25.98967 -25.63245 -23.68858 -23.13424 -22.17606 -21.67028 -21.06132 -19.92050 -19.11703 -17.92198 -17.82080 -17.17752 -16.87989 -16.51531 -16.42831 -16.27052 -16.11690 -15.93368 -15.38095 -15.19816 -15.14864 -14.84920 -14.67924 -14.34423 -14.25566 -13.81424 -13.71475 -13.57359 -13.50564 -13.36444 -13.21690 -12.91102 -12.78140 -12.53944 -12.43003 -12.27567 -12.13482 -12.04594 -11.80990 -11.51361 -11.26429 -10.92595 -10.38975 -10.36891 -10.16203 -10.02816 -9.93001 -9.33394 -8.47523 -5.96507 -0.34788 0.05784 1.37922 1.41892 1.54611 1.80998 2.00464 2.03829 2.28558 2.79116 2.87565 3.19805 3.45135 3.46857 3.52392 3.74409 3.81111 3.88873 3.95742 4.01369 4.19067 4.29597 4.40009 4.42846 4.45276 4.51832 4.59091 4.61373 4.67254 4.72670 4.76016 4.81044 4.82771 4.94014 5.04804 5.08571 5.19517 5.30205 5.36180 5.40291 5.51528 5.61544 5.87370 6.08552 6.40479 6.44172 6.58716 6.88832 7.08696 7.11477 7.54971 8.09782 8.69906 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013880 B = 0.002003 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.734529 B =13972.254449 C =15178.119513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.090 4.090 3 C 0.087 3.913 4 N -0.488 5.488 5 C 0.080 3.920 6 C -0.129 4.129 7 C -0.112 4.112 8 C 0.557 3.443 9 O -0.555 6.555 10 N -0.705 5.705 11 C 0.150 3.850 12 H 0.076 0.924 13 C -0.157 4.157 14 C -0.114 4.114 15 C 0.062 3.938 16 N -0.682 5.682 17 C 0.065 3.935 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.181 0.819 33 H 0.187 0.813 34 H 0.167 0.833 35 H 0.411 0.589 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.038 0.962 43 H 0.347 0.653 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.065 15.525 20.709 26.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.070 4.070 4 N -0.197 5.197 5 C -0.076 4.076 6 C -0.150 4.150 7 C -0.123 4.123 8 C 0.344 3.656 9 O -0.434 6.434 10 N -0.358 5.358 11 C 0.045 3.955 12 H 0.094 0.906 13 C -0.215 4.215 14 C -0.152 4.152 15 C -0.067 4.067 16 N -0.314 5.314 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.508 6.508 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.198 0.802 33 H 0.204 0.796 34 H 0.184 0.816 35 H 0.249 0.751 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.056 0.944 43 H 0.166 0.834 44 H 0.117 0.883 45 H 0.084 0.916 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.699 15.257 20.884 26.717 hybrid contribution 0.834 -0.288 -0.949 1.296 sum -5.865 14.969 19.934 25.609 Atomic orbital electron populations 1.20910 0.88815 1.03747 1.03333 1.21302 0.98794 0.92843 0.96343 1.23081 0.89706 0.98088 0.96090 1.67595 1.08839 1.32886 1.10383 1.23227 1.01899 0.86943 0.95495 1.22618 0.93151 1.01353 0.97838 1.20355 0.94738 0.93483 1.03677 1.18336 0.86699 0.84244 0.76274 1.90733 1.14748 1.87476 1.50424 1.45987 1.11456 1.05194 1.73143 1.20937 0.96132 0.81504 0.96915 0.90562 1.22103 1.02639 1.01738 0.95013 1.21783 1.01507 0.99001 0.92935 1.22024 0.97867 0.92508 0.94297 1.60050 1.22196 1.48563 1.00636 1.21517 1.00005 0.95044 0.90218 1.20863 0.84995 0.89028 0.82591 1.90486 1.57527 1.36453 1.66382 1.41955 1.46889 1.24391 1.07868 1.19678 1.28974 1.05004 0.92658 0.90200 1.26062 0.98924 0.99724 0.96660 1.69675 1.46049 1.30508 1.09992 0.84919 0.78060 0.77659 0.77660 1.19710 1.19551 1.19601 0.90681 0.89811 0.90660 0.80170 0.79620 0.81602 0.75141 0.91167 0.93515 0.90436 0.89734 0.89243 0.91521 0.94357 0.83412 0.88346 0.91630 0.77027 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 8.84 71.24 0.63 -1.14 16 2 C -0.09 -1.52 5.93 -19.50 -0.12 -1.64 16 3 C 0.09 1.35 10.83 84.68 0.92 2.27 16 4 N -0.49 -8.43 10.33 -196.02 -2.03 -10.45 16 5 C 0.08 1.06 11.17 84.67 0.95 2.00 16 6 C -0.13 -1.55 9.60 22.63 0.22 -1.34 16 7 C -0.11 -1.87 5.91 -19.88 -0.12 -1.99 16 8 C 0.56 10.50 7.70 86.88 0.67 11.17 16 9 O -0.55 -13.78 13.19 -3.75 -0.05 -13.83 16 10 N -0.71 -9.80 4.49 -445.13 -2.00 -11.79 16 11 C 0.15 2.26 2.57 44.99 0.12 2.37 16 12 H 0.08 1.46 7.58 -2.39 -0.02 1.44 16 13 C -0.16 -2.13 9.48 71.98 0.68 -1.45 16 14 C -0.11 -1.76 5.01 30.59 0.15 -1.60 16 15 C 0.06 1.26 5.57 86.30 0.48 1.74 16 16 N -0.68 -19.84 6.13 -517.91 -3.17 -23.01 16 17 C 0.06 2.15 6.17 85.56 0.53 2.68 16 18 C 0.44 20.54 7.82 87.66 0.69 21.22 16 19 O -0.62 -33.91 15.78 -3.06 -0.05 -33.96 16 20 N -0.57 -29.29 5.29 -306.99 -1.62 -30.91 16 21 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 24 N -0.92 -49.63 13.05 21.66 0.28 -49.35 16 25 Si 0.99 42.64 29.55 68.60 2.03 44.66 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 28 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 0.94 8.06 -2.39 -0.02 0.92 16 31 H 0.07 1.55 5.95 -2.39 -0.01 1.53 16 32 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 33 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.17 0.92 6.58 -2.91 -0.02 0.90 16 35 H 0.41 3.72 6.78 -92.71 -0.63 3.09 16 36 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.04 0.70 7.75 -2.39 -0.02 0.68 16 43 H 0.35 10.23 8.43 -89.70 -0.76 9.48 16 44 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 45 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 46 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 47 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -73.63 394.82 -0.63 -74.26 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -1.10 Total: 38.40 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 7.07 Total: 15.99 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -8.54 Total: -125.52 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -0.10 Total: -47.79 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -73.63 -0.63 -74.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699099926.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.094 kcal (2) G-P(sol) polarization free energy of solvation -73.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds