Wall clock time and date at job start Tue Mar 31 2020 19:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38169 * 120.50312 * 2 1 4 4 N 1.31791 * 120.89817 * 179.97438 * 3 2 1 5 5 C 1.31834 * 122.04805 * 0.02670 * 4 3 2 6 6 C 1.38126 * 120.89540 * 359.97438 * 5 4 3 7 7 C 1.39794 * 120.49851 * 179.97438 * 2 1 3 8 8 C 1.48155 * 120.92349 * 0.05314 * 7 2 1 9 9 O 1.21516 * 119.99938 * 6.05030 * 8 7 2 10 10 N 1.34772 * 119.99980 * 186.05132 * 8 7 2 11 11 C 1.46507 * 119.99884 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47250 * 325.00298 * 11 10 8 13 13 C 1.53005 * 109.46658 * 85.00079 * 11 10 8 14 14 C 1.52999 * 109.47229 * 205.00026 * 11 10 8 15 15 C 1.52994 * 109.47093 * 65.00351 * 14 11 10 16 16 N 1.46904 * 109.47169 * 179.97438 * 15 14 11 17 17 C 1.46906 * 110.99862 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.46923 * 179.97438 * 17 16 15 19 19 O 1.21294 * 119.99957 * 0.02562 * 18 17 16 20 20 N 1.34772 * 119.99880 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00103 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99536 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00044 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00528 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99723 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47274 * 90.00116 * 25 23 21 27 27 H 1.48501 * 109.46789 * 209.99499 * 25 23 21 28 28 H 1.48498 * 109.47322 * 329.99709 * 25 23 21 29 29 H 1.09005 * 109.46474 * 96.33426 * 1 2 3 30 30 H 1.08997 * 109.47506 * 216.32867 * 1 2 3 31 31 H 1.08997 * 109.46979 * 336.34025 * 1 2 3 32 32 H 1.08003 * 119.54834 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.55079 * 179.71938 * 5 4 3 34 34 H 1.07997 * 120.49810 * 179.97438 * 6 5 4 35 35 H 0.96999 * 120.00209 * 359.97438 * 10 8 7 36 36 H 1.08995 * 109.47409 * 300.00128 * 13 11 10 37 37 H 1.08997 * 109.47112 * 60.00134 * 13 11 10 38 38 H 1.09003 * 109.46940 * 179.97438 * 13 11 10 39 39 H 1.09001 * 109.46892 * 185.00316 * 14 11 10 40 40 H 1.08999 * 109.47341 * 305.00081 * 14 11 10 41 41 H 1.09001 * 109.47223 * 299.99763 * 15 14 11 42 42 H 1.08999 * 109.47248 * 59.99673 * 15 14 11 43 43 H 1.00891 * 111.00014 * 303.95526 * 16 15 14 44 44 H 1.09001 * 109.47215 * 299.99797 * 17 16 15 45 45 H 1.09003 * 109.46806 * 60.00146 * 17 16 15 46 46 H 0.97006 * 120.00151 * 0.02562 * 20 18 17 47 47 H 0.96997 * 120.00460 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1996 0.0005 5 6 4.2335 0.0870 0.0005 6 6 3.6137 -1.1474 0.0005 7 6 2.2165 -1.2045 0.0005 8 6 1.5078 -2.5056 -0.0001 9 8 0.2982 -2.5385 -0.1119 10 7 2.2046 -3.6525 0.1235 11 6 1.5037 -4.9391 0.1235 12 1 0.5400 -4.8278 0.6204 13 6 1.2836 -5.3998 -1.3189 14 6 2.3446 -5.9780 0.8681 15 6 2.4600 -5.5801 2.3409 16 7 3.2668 -6.5779 3.0560 17 6 3.3998 -6.2274 4.4764 18 6 4.2313 -7.2718 5.1757 19 8 4.6703 -8.2150 4.5521 20 7 4.4880 -7.1572 6.4938 21 6 5.2448 -8.1070 7.1299 22 1 5.6350 -8.9473 6.5748 23 6 5.5090 -7.9892 8.4889 24 7 5.0338 -6.9671 9.1645 25 14 6.5397 -9.2838 9.3557 26 1 7.9722 -8.8970 9.2968 27 1 6.1130 -9.3877 10.7743 28 1 6.3531 -10.5956 8.6852 29 1 -0.3632 -0.1134 -1.0215 30 1 -0.3634 -0.8279 0.6088 31 1 -0.3633 0.9413 0.4124 32 1 1.6692 2.1263 -0.0004 33 1 5.3121 0.1415 -0.0037 34 1 4.1993 -2.0548 0.0001 35 1 3.1701 -3.6263 0.2125 36 1 0.6846 -4.6597 -1.8493 37 1 2.2473 -5.5110 -1.8158 38 1 0.7626 -6.3572 -1.3189 39 1 1.8664 -6.9546 0.7920 40 1 3.3395 -6.0251 0.4254 41 1 2.9381 -4.6035 2.4170 42 1 1.4650 -5.5330 2.7835 43 1 2.8787 -7.5027 2.9462 44 1 3.8851 -5.2556 4.5670 45 1 2.4115 -6.1841 4.9340 46 1 4.1372 -6.4027 6.9925 47 1 5.2185 -6.8847 10.1131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699099929.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:17 Heat of formation + Delta-G solvation = -44.301461 kcal Electronic energy + Delta-G solvation = -27566.758966 eV Core-core repulsion = 23556.102838 eV Total energy + Delta-G solvation = -4010.656127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15930 -39.58198 -38.34575 -37.08386 -35.14967 -33.87475 -33.76193 -33.08483 -31.36705 -31.16022 -29.32168 -27.72988 -26.28717 -25.17099 -24.13971 -22.94358 -22.25748 -21.45551 -20.90663 -19.28140 -18.45792 -17.89513 -17.20584 -16.45798 -16.09483 -15.77240 -15.69560 -15.59096 -15.40359 -14.61744 -14.50328 -14.35234 -14.11463 -13.87293 -13.78727 -13.74285 -13.68180 -13.16973 -13.01991 -12.80034 -12.73358 -12.32918 -12.24683 -11.96304 -11.69694 -11.53160 -11.34354 -11.29611 -11.07826 -10.98689 -10.53206 -10.41072 -10.25155 -10.23785 -9.70623 -9.53105 -9.47860 -9.29644 -8.50270 -8.11037 -7.98397 -6.43663 -3.84729 0.31371 0.65445 2.53092 2.69500 3.16422 3.25172 3.30885 3.42240 3.87941 3.98007 4.00125 4.14332 4.22917 4.32081 4.40251 4.55740 4.72033 4.76625 4.86726 4.95650 5.06849 5.20426 5.20811 5.26142 5.27529 5.28569 5.39395 5.42260 5.44816 5.49692 5.58756 5.68463 5.74989 5.82346 5.87661 5.94470 5.97756 6.03179 6.18488 6.22082 6.24024 7.08673 7.15430 7.49485 7.53244 7.60679 7.78895 8.04075 8.58869 9.15671 9.51968 10.03179 10.74068 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.002003 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.684849 B =13975.385560 C =15188.903653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.077 4.077 3 C 0.093 3.907 4 N -0.465 5.465 5 C 0.087 3.913 6 C -0.135 4.135 7 C -0.096 4.096 8 C 0.559 3.441 9 O -0.525 6.525 10 N -0.715 5.715 11 C 0.144 3.856 12 H 0.091 0.909 13 C -0.162 4.162 14 C -0.126 4.126 15 C 0.058 3.942 16 N -0.669 5.669 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.140 0.860 35 H 0.402 0.598 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.027 0.973 43 H 0.349 0.651 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.271 14.109 -20.029 25.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.080 4.080 3 C -0.065 4.065 4 N -0.174 5.174 5 C -0.069 4.069 6 C -0.156 4.156 7 C -0.107 4.107 8 C 0.346 3.654 9 O -0.402 6.402 10 N -0.367 5.367 11 C 0.039 3.961 12 H 0.109 0.891 13 C -0.221 4.221 14 C -0.164 4.164 15 C -0.071 4.071 16 N -0.302 5.302 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.179 0.821 33 H 0.180 0.820 34 H 0.158 0.842 35 H 0.238 0.762 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.169 0.831 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.785 14.524 -20.480 26.286 hybrid contribution -0.377 -1.075 1.275 1.710 sum -8.162 13.448 -19.205 24.825 Atomic orbital electron populations 1.20989 0.88976 1.03579 1.03816 1.21139 0.98468 0.92463 0.95926 1.22774 0.89777 0.97448 0.96507 1.67559 1.08322 1.31871 1.09648 1.22760 1.00723 0.87177 0.96221 1.22374 0.93836 1.00367 0.99009 1.20249 0.93798 0.93885 1.02739 1.18149 0.86969 0.83579 0.76690 1.90740 1.13422 1.87059 1.48981 1.46065 1.11085 1.05694 1.73883 1.21041 0.96767 0.81691 0.96568 0.89115 1.22162 1.02220 1.01794 0.95885 1.21890 1.01135 0.98440 0.94981 1.21962 0.95438 0.96538 0.93182 1.60078 1.53984 1.05613 1.10497 1.21668 0.98766 0.99384 0.88390 1.19799 0.86169 0.88456 0.83009 1.90520 1.56102 1.34710 1.65486 1.41872 1.46634 1.24542 1.06948 1.19704 1.27187 1.04331 0.91714 0.87901 1.25271 0.98229 0.97879 0.96583 1.69608 1.45539 1.29655 1.09503 0.85852 0.79585 0.80620 0.78197 1.20358 1.20923 1.19411 0.90379 0.88588 0.91776 0.82104 0.81997 0.84201 0.76239 0.92114 0.92244 0.91271 0.89956 0.90109 0.91282 0.95481 0.83145 0.89709 0.93910 0.77457 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 8.84 36.01 0.32 -0.62 16 2 C -0.08 -0.68 5.93 -104.06 -0.62 -1.30 16 3 C 0.09 0.77 10.83 -17.59 -0.19 0.58 16 4 N -0.47 -4.40 10.33 -13.30 -0.14 -4.53 16 5 C 0.09 0.68 11.17 -17.59 -0.20 0.48 16 6 C -0.14 -0.98 9.60 -39.03 -0.37 -1.36 16 7 C -0.10 -0.86 5.91 -104.65 -0.62 -1.48 16 8 C 0.56 5.53 7.70 -12.19 -0.09 5.44 16 9 O -0.52 -6.47 13.20 5.35 0.07 -6.40 16 10 N -0.71 -5.71 4.49 -54.65 -0.25 -5.95 16 11 C 0.14 1.19 2.57 -67.92 -0.17 1.01 16 12 H 0.09 0.88 7.58 -51.93 -0.39 0.49 16 13 C -0.16 -1.22 9.48 37.16 0.35 -0.87 16 14 C -0.13 -1.10 5.01 -26.73 -0.13 -1.24 16 15 C 0.06 0.66 5.57 -3.82 -0.02 0.64 16 16 N -0.67 -10.28 6.13 -115.05 -0.70 -10.99 16 17 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 18 C 0.44 10.33 7.82 -10.99 -0.09 10.25 16 19 O -0.58 -15.74 15.78 5.54 0.09 -15.65 16 20 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 21 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 22 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 25 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 0.96 5.95 -51.93 -0.31 0.65 16 31 H 0.06 0.38 8.06 -51.93 -0.42 -0.04 16 32 H 0.16 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 34 H 0.14 0.65 6.58 -52.49 -0.35 0.31 16 35 H 0.40 2.51 6.78 -40.82 -0.28 2.24 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 42 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.35 5.54 8.43 -39.30 -0.33 5.21 16 44 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 47 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 394.82 15.07 5.95 5.95 Total: -1.00 -33.67 394.82 -8.41 -42.07 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -6.96 Total: 13.28 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -2.11 Total: 4.39 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.42 Total: -59.60 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: 0.16 Total: -22.05 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.67 -8.41 -42.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699099929.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.228 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds