Wall clock time and date at job start Tue Mar 31 2020 19:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38169 * 120.50312 * 2 1 4 4 N 1.31791 * 120.89817 * 179.97438 * 3 2 1 5 5 C 1.31834 * 122.04805 * 0.02670 * 4 3 2 6 6 C 1.38126 * 120.89540 * 359.97438 * 5 4 3 7 7 C 1.39794 * 120.49851 * 179.97438 * 2 1 3 8 8 C 1.48155 * 120.92349 * 0.05314 * 7 2 1 9 9 O 1.21516 * 119.99938 * 6.05030 * 8 7 2 10 10 N 1.34772 * 119.99980 * 186.05132 * 8 7 2 11 11 C 1.46507 * 119.99884 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47250 * 325.00298 * 11 10 8 13 13 C 1.53005 * 109.46658 * 85.00079 * 11 10 8 14 14 C 1.52999 * 109.47229 * 205.00026 * 11 10 8 15 15 C 1.52994 * 109.47093 * 65.00351 * 14 11 10 16 16 N 1.46904 * 109.47169 * 179.97438 * 15 14 11 17 17 C 1.46906 * 110.99862 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.46923 * 179.97438 * 17 16 15 19 19 O 1.21294 * 119.99957 * 0.02562 * 18 17 16 20 20 N 1.34772 * 119.99880 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00103 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99536 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00044 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00528 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99723 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47274 * 90.00116 * 25 23 21 27 27 H 1.48501 * 109.46789 * 209.99499 * 25 23 21 28 28 H 1.48498 * 109.47322 * 329.99709 * 25 23 21 29 29 H 1.09005 * 109.46474 * 96.33426 * 1 2 3 30 30 H 1.08997 * 109.47506 * 216.32867 * 1 2 3 31 31 H 1.08997 * 109.46979 * 336.34025 * 1 2 3 32 32 H 1.08003 * 119.54834 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.55079 * 179.71938 * 5 4 3 34 34 H 1.07997 * 120.49810 * 179.97438 * 6 5 4 35 35 H 0.96999 * 120.00209 * 359.97438 * 10 8 7 36 36 H 1.08995 * 109.47409 * 300.00128 * 13 11 10 37 37 H 1.08997 * 109.47112 * 60.00134 * 13 11 10 38 38 H 1.09003 * 109.46940 * 179.97438 * 13 11 10 39 39 H 1.09001 * 109.46892 * 185.00316 * 14 11 10 40 40 H 1.08999 * 109.47341 * 305.00081 * 14 11 10 41 41 H 1.09001 * 109.47223 * 299.99763 * 15 14 11 42 42 H 1.08999 * 109.47248 * 59.99673 * 15 14 11 43 43 H 1.00891 * 111.00014 * 303.95526 * 16 15 14 44 44 H 1.09001 * 109.47215 * 299.99797 * 17 16 15 45 45 H 1.09003 * 109.46806 * 60.00146 * 17 16 15 46 46 H 0.97006 * 120.00151 * 0.02562 * 20 18 17 47 47 H 0.96997 * 120.00460 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1996 0.0005 5 6 4.2335 0.0870 0.0005 6 6 3.6137 -1.1474 0.0005 7 6 2.2165 -1.2045 0.0005 8 6 1.5078 -2.5056 -0.0001 9 8 0.2982 -2.5385 -0.1119 10 7 2.2046 -3.6525 0.1235 11 6 1.5037 -4.9391 0.1235 12 1 0.5400 -4.8278 0.6204 13 6 1.2836 -5.3998 -1.3189 14 6 2.3446 -5.9780 0.8681 15 6 2.4600 -5.5801 2.3409 16 7 3.2668 -6.5779 3.0560 17 6 3.3998 -6.2274 4.4764 18 6 4.2313 -7.2718 5.1757 19 8 4.6703 -8.2150 4.5521 20 7 4.4880 -7.1572 6.4938 21 6 5.2448 -8.1070 7.1299 22 1 5.6350 -8.9473 6.5748 23 6 5.5090 -7.9892 8.4889 24 7 5.0338 -6.9671 9.1645 25 14 6.5397 -9.2838 9.3557 26 1 7.9722 -8.8970 9.2968 27 1 6.1130 -9.3877 10.7743 28 1 6.3531 -10.5956 8.6852 29 1 -0.3632 -0.1134 -1.0215 30 1 -0.3634 -0.8279 0.6088 31 1 -0.3633 0.9413 0.4124 32 1 1.6692 2.1263 -0.0004 33 1 5.3121 0.1415 -0.0037 34 1 4.1993 -2.0548 0.0001 35 1 3.1701 -3.6263 0.2125 36 1 0.6846 -4.6597 -1.8493 37 1 2.2473 -5.5110 -1.8158 38 1 0.7626 -6.3572 -1.3189 39 1 1.8664 -6.9546 0.7920 40 1 3.3395 -6.0251 0.4254 41 1 2.9381 -4.6035 2.4170 42 1 1.4650 -5.5330 2.7835 43 1 2.8787 -7.5027 2.9462 44 1 3.8851 -5.2556 4.5670 45 1 2.4115 -6.1841 4.9340 46 1 4.1372 -6.4027 6.9925 47 1 5.2185 -6.8847 10.1131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699099929.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:16 Heat of formation + Delta-G solvation = -69.307885 kcal Electronic energy + Delta-G solvation = -27567.843326 eV Core-core repulsion = 23556.102838 eV Total energy + Delta-G solvation = -4011.740487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.81829 -40.31581 -40.11312 -38.01193 -36.36431 -35.74129 -34.41505 -33.79374 -33.27367 -32.01353 -30.30648 -28.34218 -27.79611 -25.98688 -25.62199 -23.67675 -23.12955 -22.18117 -21.63379 -21.06871 -19.92348 -19.10939 -17.90264 -17.83281 -17.19855 -16.84814 -16.50221 -16.43119 -16.26305 -16.13573 -15.91260 -15.41514 -15.21643 -14.98542 -14.89336 -14.62616 -14.35978 -14.29945 -13.89209 -13.66518 -13.57358 -13.49704 -13.36502 -13.21042 -12.92563 -12.77891 -12.52856 -12.43121 -12.21483 -12.13079 -12.11750 -11.78704 -11.51316 -11.25671 -10.91381 -10.37325 -10.36577 -10.15266 -10.02877 -9.91766 -9.36189 -8.47532 -5.96557 -0.33628 0.07029 1.37893 1.41855 1.54608 1.81844 2.01772 2.03754 2.28501 2.80277 2.87161 3.19747 3.45577 3.47239 3.53171 3.75936 3.82299 3.93054 3.97148 4.02855 4.09242 4.31130 4.41113 4.42859 4.47903 4.52102 4.60227 4.62142 4.67235 4.73815 4.76651 4.82561 4.84032 4.90002 5.03724 5.09245 5.19925 5.30083 5.36903 5.40244 5.51712 5.62699 5.86985 6.08116 6.38505 6.43584 6.58632 6.89954 7.09398 7.11427 7.54886 8.09689 8.69900 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.002003 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.684849 B =13975.385560 C =15188.903653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.090 4.090 3 C 0.087 3.913 4 N -0.488 5.488 5 C 0.080 3.920 6 C -0.129 4.129 7 C -0.112 4.112 8 C 0.557 3.443 9 O -0.555 6.555 10 N -0.705 5.705 11 C 0.150 3.850 12 H 0.076 0.924 13 C -0.157 4.157 14 C -0.115 4.115 15 C 0.061 3.939 16 N -0.679 5.679 17 C 0.064 3.936 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.181 0.819 33 H 0.187 0.813 34 H 0.166 0.834 35 H 0.412 0.588 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.029 0.971 43 H 0.345 0.655 44 H 0.103 0.897 45 H 0.062 0.938 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.676 14.525 -20.293 26.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.070 4.070 4 N -0.197 5.197 5 C -0.076 4.076 6 C -0.149 4.149 7 C -0.123 4.123 8 C 0.345 3.655 9 O -0.435 6.435 10 N -0.358 5.358 11 C 0.045 3.955 12 H 0.094 0.906 13 C -0.215 4.215 14 C -0.153 4.153 15 C -0.068 4.068 16 N -0.311 5.311 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.508 6.508 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.198 0.802 33 H 0.204 0.796 34 H 0.184 0.816 35 H 0.249 0.751 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.047 0.953 43 H 0.164 0.836 44 H 0.121 0.879 45 H 0.080 0.920 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.187 14.964 -20.748 26.571 hybrid contribution -0.569 -1.186 1.305 1.853 sum -7.756 13.778 -19.442 25.060 Atomic orbital electron populations 1.20905 0.88802 1.03733 1.03322 1.21297 0.98791 0.92826 0.96366 1.23082 0.89705 0.98086 0.96114 1.67597 1.08846 1.32860 1.10385 1.23227 1.01898 0.86941 0.95495 1.22624 0.93190 1.01362 0.97760 1.20349 0.94713 0.93494 1.03694 1.18333 0.86683 0.84240 0.76256 1.90730 1.14725 1.87499 1.50507 1.45998 1.11550 1.05177 1.73063 1.20942 0.96010 0.81604 0.96926 0.90572 1.22107 1.02625 1.01765 0.95014 1.21789 1.01559 0.98732 0.93215 1.22037 0.94902 0.95719 0.94132 1.60097 1.55407 1.06339 1.09300 1.21528 0.98475 0.97610 0.89223 1.20858 0.85373 0.88870 0.82371 1.90488 1.57521 1.36665 1.66171 1.41953 1.46937 1.24404 1.07799 1.19676 1.29096 1.04959 0.92584 0.90199 1.26059 0.98872 0.99769 0.96659 1.69669 1.45924 1.30650 1.09982 0.84921 0.78186 0.77866 0.77335 1.19581 1.19607 1.19670 0.90691 0.90668 0.89810 0.80157 0.79644 0.81644 0.75051 0.93509 0.91243 0.90335 0.89349 0.89558 0.90648 0.95277 0.83620 0.87927 0.92032 0.77024 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 8.84 71.24 0.63 -1.15 16 2 C -0.09 -1.55 5.93 -19.50 -0.12 -1.66 16 3 C 0.09 1.38 10.83 84.68 0.92 2.29 16 4 N -0.49 -8.62 10.33 -196.00 -2.03 -10.64 16 5 C 0.08 1.10 11.17 84.67 0.95 2.05 16 6 C -0.13 -1.64 9.60 22.63 0.22 -1.42 16 7 C -0.11 -1.91 5.91 -19.88 -0.12 -2.03 16 8 C 0.56 10.68 7.70 86.88 0.67 11.35 16 9 O -0.56 -13.84 13.20 -3.77 -0.05 -13.89 16 10 N -0.71 -10.20 4.49 -445.10 -2.00 -12.19 16 11 C 0.15 2.26 2.57 44.99 0.12 2.38 16 12 H 0.08 1.42 7.58 -2.39 -0.02 1.41 16 13 C -0.16 -2.13 9.48 71.98 0.68 -1.44 16 14 C -0.11 -1.77 5.01 30.59 0.15 -1.62 16 15 C 0.06 1.25 5.57 86.30 0.48 1.73 16 16 N -0.68 -19.78 6.13 -517.91 -3.17 -22.95 16 17 C 0.06 2.14 6.17 85.56 0.53 2.67 16 18 C 0.44 20.54 7.82 87.66 0.69 21.22 16 19 O -0.62 -33.91 15.78 -3.07 -0.05 -33.96 16 20 N -0.57 -29.28 5.29 -306.99 -1.62 -30.90 16 21 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 24 N -0.92 -49.63 13.05 21.66 0.28 -49.35 16 25 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 29 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.07 1.55 5.95 -2.39 -0.01 1.53 16 31 H 0.08 0.94 8.06 -2.39 -0.02 0.92 16 32 H 0.18 1.88 8.06 -2.91 -0.02 1.85 16 33 H 0.19 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.17 1.09 6.58 -2.91 -0.02 1.07 16 35 H 0.41 4.20 6.78 -92.71 -0.63 3.57 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.08 1.47 7.75 -2.39 -0.02 1.45 16 42 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.35 10.57 8.43 -89.70 -0.76 9.81 16 44 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 45 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.40 19.23 7.90 -92.70 -0.73 18.50 16 47 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -73.11 394.82 -0.63 -73.75 By element: Atomic # 1 Polarization: 40.52 SS G_CDS: -1.10 Total: 39.42 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 7.07 Total: 16.05 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -8.54 Total: -126.04 kcal Atomic # 8 Polarization: -47.74 SS G_CDS: -0.10 Total: -47.84 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -73.11 -0.63 -73.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699099929.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.438 kcal (2) G-P(sol) polarization free energy of solvation -73.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds