Wall clock time and date at job start Tue Mar 31 2020 19:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38171 * 120.49971 * 2 1 4 4 N 1.31796 * 120.89238 * 179.97438 * 3 2 1 5 5 C 1.31830 * 122.05236 * 0.02562 * 4 3 2 6 6 C 1.38118 * 120.89644 * 359.97438 * 5 4 3 7 7 C 1.39800 * 120.50032 * 179.97438 * 2 1 3 8 8 C 1.48152 * 120.91847 * 0.05086 * 7 2 1 9 9 O 1.21512 * 120.00307 * 5.85234 * 8 7 2 10 10 N 1.34780 * 119.99424 * 185.85099 * 8 7 2 11 11 C 1.46506 * 119.99774 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47290 * 38.04055 * 11 10 8 13 13 C 1.53004 * 109.46501 * 278.04340 * 11 10 8 14 14 C 1.52997 * 109.47327 * 158.04831 * 11 10 8 15 15 N 1.46903 * 109.46883 * 305.85786 * 14 11 10 16 16 C 1.46899 * 111.00089 * 170.12740 * 15 14 11 17 17 C 1.46907 * 110.99903 * 294.07701 * 15 14 11 18 18 C 1.50695 * 109.47258 * 170.00053 * 17 15 14 19 19 O 1.21294 * 120.00255 * 0.02562 * 18 17 15 20 20 N 1.34777 * 120.00328 * 180.02562 * 18 17 15 21 21 C 1.37099 * 120.00190 * 180.02562 * 20 18 17 22 22 H 1.07991 * 119.99939 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99919 * 179.97438 * 21 20 18 24 24 N 1.31417 * 119.99824 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00063 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46920 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46821 * 120.00165 * 25 23 21 28 28 H 1.48498 * 109.47200 * 239.99881 * 25 23 21 29 29 H 1.08998 * 109.46612 * 97.03952 * 1 2 3 30 30 H 1.08996 * 109.47369 * 217.03640 * 1 2 3 31 31 H 1.08993 * 109.47293 * 337.04508 * 1 2 3 32 32 H 1.08003 * 119.55463 * 359.96776 * 3 2 1 33 33 H 1.07999 * 119.54786 * 179.71831 * 5 4 3 34 34 H 1.08001 * 120.50094 * 179.97438 * 6 5 4 35 35 H 0.97002 * 120.00232 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.47564 * 299.99991 * 13 11 10 37 37 H 1.08999 * 109.46867 * 60.00274 * 13 11 10 38 38 H 1.09004 * 109.46785 * 179.97438 * 13 11 10 39 39 H 1.08999 * 109.47350 * 65.85584 * 14 11 10 40 40 H 1.08995 * 109.47421 * 185.85929 * 14 11 10 41 41 H 1.09001 * 109.47437 * 65.55874 * 16 15 14 42 42 H 1.09003 * 109.47233 * 185.56332 * 16 15 14 43 43 H 1.09006 * 109.46530 * 305.55580 * 16 15 14 44 44 H 1.08997 * 109.47122 * 290.00375 * 17 15 14 45 45 H 1.09007 * 109.46758 * 50.00131 * 17 15 14 46 46 H 0.96999 * 119.99544 * 359.97438 * 20 18 17 47 47 H 0.97004 * 119.99606 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1996 0.0005 5 6 4.2335 0.0870 0.0005 6 6 3.6138 -1.1473 0.0006 7 6 2.2166 -1.2046 0.0005 8 6 1.5078 -2.5055 0.0000 9 8 0.2980 -2.5383 -0.1082 10 7 2.2051 -3.6527 0.1195 11 6 1.5043 -4.9393 0.1184 12 1 0.6810 -4.9040 -0.5949 13 6 0.9546 -5.2217 1.5181 14 6 2.4779 -6.0500 -0.2807 15 7 3.1114 -5.7089 -1.5615 16 6 4.2173 -6.6276 -1.8630 17 6 2.1251 -5.6972 -2.6501 18 6 2.7511 -5.1103 -3.8889 19 8 3.9056 -4.7387 -3.8673 20 7 2.0283 -4.9982 -5.0209 21 6 2.5981 -4.4647 -6.1481 22 1 3.6259 -4.1339 -6.1287 23 6 1.8530 -4.3497 -7.3152 24 7 0.6021 -4.7518 -7.3385 25 14 2.6290 -3.6222 -8.8508 26 1 4.0375 -3.2490 -8.5643 27 1 2.5960 -4.6257 -9.9450 28 1 1.8705 -2.4142 -9.2639 29 1 -0.3632 -0.1259 -1.0199 30 1 -0.3634 -0.8203 0.6190 31 1 -0.3633 0.9462 0.4008 32 1 1.6692 2.1264 -0.0005 33 1 5.3121 0.1416 -0.0037 34 1 4.1995 -2.0547 0.0002 35 1 3.1709 -3.6266 0.2055 36 1 1.7779 -5.2570 2.2316 37 1 0.2611 -4.4304 1.8025 38 1 0.4329 -6.1788 1.5172 39 1 3.2443 -6.1548 0.4872 40 1 1.9351 -6.9897 -0.3829 41 1 3.8232 -7.6317 -2.0195 42 1 4.7311 -6.2942 -2.7647 43 1 4.9184 -6.6384 -1.0284 44 1 1.7990 -6.7167 -2.8559 45 1 1.2665 -5.0935 -2.3560 46 1 1.1053 -5.2957 -5.0383 47 1 0.0821 -4.6719 -8.1535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699446293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:33 Heat of formation + Delta-G solvation = -51.668556 kcal Electronic energy + Delta-G solvation = -29376.022250 eV Core-core repulsion = 25365.046661 eV Total energy + Delta-G solvation = -4010.975589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.78431 -40.58040 -40.02040 -38.30692 -36.20011 -35.61918 -34.39146 -33.54434 -33.28495 -31.56424 -29.61116 -28.33190 -27.97432 -26.61628 -25.79139 -23.91395 -23.27576 -22.16754 -21.63877 -20.81745 -19.85518 -19.12422 -17.93718 -17.83285 -16.91760 -16.70940 -16.55505 -16.50943 -16.21448 -16.10693 -15.86951 -15.40956 -15.24466 -15.11156 -14.86774 -14.62617 -14.33428 -14.15112 -13.73028 -13.68679 -13.49529 -13.42656 -13.22229 -13.06113 -12.94940 -12.81880 -12.66940 -12.51537 -12.46038 -12.36637 -12.13673 -11.70279 -11.45783 -11.23105 -10.88085 -10.35694 -10.27051 -10.06945 -10.00892 -9.89621 -9.22107 -8.47825 -5.96395 -0.31100 0.07928 1.34309 1.39145 1.53308 1.86054 2.04380 2.10255 2.26806 2.77686 2.81691 3.19028 3.35970 3.47406 3.59609 3.73806 3.81192 3.84396 3.98061 4.12050 4.15993 4.32334 4.38870 4.42192 4.50375 4.58379 4.62791 4.65656 4.73275 4.74120 4.76225 4.79297 4.82197 4.84358 5.03550 5.09631 5.24552 5.29740 5.35784 5.39630 5.54671 5.63353 5.85587 6.05050 6.19979 6.52197 6.58781 6.88787 7.11930 7.17545 7.55337 8.10583 8.70073 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008710 B = 0.003853 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.867707 B = 7265.139244 C = 8901.733521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.093 4.093 3 C 0.087 3.913 4 N -0.486 5.486 5 C 0.080 3.920 6 C -0.129 4.129 7 C -0.112 4.112 8 C 0.553 3.447 9 O -0.561 6.561 10 N -0.689 5.689 11 C 0.142 3.858 12 H 0.062 0.938 13 C -0.151 4.151 14 C 0.049 3.951 15 N -0.528 5.528 16 C 0.027 3.973 17 C 0.057 3.943 18 C 0.443 3.557 19 O -0.608 6.608 20 N -0.578 5.578 21 C -0.329 4.329 22 H 0.080 0.920 23 C -0.015 4.015 24 N -0.923 5.923 25 Si 0.991 3.009 26 H -0.272 1.272 27 H -0.269 1.269 28 H -0.273 1.273 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.185 0.815 33 H 0.188 0.812 34 H 0.159 0.841 35 H 0.411 0.589 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.027 0.973 42 H 0.054 0.946 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.393 0.607 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.884 1.179 20.256 20.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.096 4.096 3 C -0.070 4.070 4 N -0.194 5.194 5 C -0.075 4.075 6 C -0.150 4.150 7 C -0.123 4.123 8 C 0.340 3.660 9 O -0.441 6.441 10 N -0.340 5.340 11 C 0.038 3.962 12 H 0.080 0.920 13 C -0.210 4.210 14 C -0.079 4.079 15 N -0.252 5.252 16 C -0.120 4.120 17 C -0.074 4.074 18 C 0.231 3.769 19 O -0.493 6.493 20 N -0.215 5.215 21 C -0.458 4.458 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.815 3.185 26 H -0.196 1.196 27 H -0.194 1.194 28 H -0.199 1.199 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.202 0.798 33 H 0.205 0.795 34 H 0.177 0.823 35 H 0.249 0.751 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.130 0.870 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.108 0.892 46 H 0.226 0.774 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.319 2.604 20.092 20.392 hybrid contribution -0.697 -1.411 -1.331 2.061 sum 1.621 1.192 18.761 18.869 Atomic orbital electron populations 1.20874 0.88767 1.03951 1.02884 1.21325 0.98878 0.92853 0.96547 1.23098 0.89753 0.98001 0.96179 1.67586 1.08774 1.32567 1.10519 1.23187 1.01870 0.86847 0.95637 1.22594 0.93348 1.01322 0.97705 1.20423 0.94786 0.93828 1.03271 1.18345 0.86747 0.84505 0.76378 1.90704 1.14728 1.87584 1.51112 1.45698 1.11370 1.04756 1.72204 1.21107 0.94622 0.82117 0.98386 0.92010 1.22055 1.01652 1.02474 0.94790 1.22589 0.98024 0.96110 0.91183 1.61535 1.09710 1.52797 1.01203 1.22435 0.93847 0.92708 1.03034 1.21723 0.95234 1.00272 0.90175 1.20717 0.87188 0.83854 0.85175 1.90446 1.19055 1.54718 1.85101 1.41977 1.14086 1.55823 1.09659 1.19675 0.98224 1.38748 0.89181 0.90204 1.26039 0.95911 0.97628 1.01835 1.69693 1.08683 1.47796 1.30235 0.84894 0.78166 0.78098 0.77345 1.19621 1.19436 1.19879 0.91875 0.90264 0.89234 0.79812 0.79530 0.82322 0.75135 0.90482 0.93596 0.89788 0.87030 0.91514 0.95445 0.92738 0.89126 0.91664 0.89225 0.77428 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.59 8.81 71.24 0.63 -1.96 16 2 C -0.09 -2.40 5.93 -19.50 -0.12 -2.51 16 3 C 0.09 2.01 10.83 84.68 0.92 2.93 16 4 N -0.49 -12.05 10.33 -196.01 -2.03 -14.07 16 5 C 0.08 1.76 11.17 84.66 0.95 2.71 16 6 C -0.13 -2.93 9.60 22.63 0.22 -2.71 16 7 C -0.11 -3.03 5.91 -19.88 -0.12 -3.14 16 8 C 0.55 16.06 7.66 86.88 0.67 16.73 16 9 O -0.56 -19.22 13.13 -3.75 -0.05 -19.27 16 10 N -0.69 -16.22 4.77 -445.11 -2.12 -18.34 16 11 C 0.14 3.04 2.32 44.99 0.10 3.14 16 12 H 0.06 1.68 6.16 -2.39 -0.01 1.67 16 13 C -0.15 -2.46 9.44 71.98 0.68 -1.78 16 14 C 0.05 0.90 4.51 86.30 0.39 1.29 16 15 N -0.53 -14.76 4.20 -927.03 -3.90 -18.65 16 16 C 0.03 0.75 9.20 127.69 1.17 1.92 16 17 C 0.06 1.98 5.31 85.55 0.45 2.43 16 18 C 0.44 21.08 7.52 87.66 0.66 21.74 16 19 O -0.61 -32.47 13.88 -3.07 -0.04 -32.51 16 20 N -0.58 -30.36 5.29 -306.99 -1.62 -31.98 16 21 C -0.33 -18.94 9.68 84.04 0.81 -18.12 16 22 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 23 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 24 N -0.92 -51.13 13.05 21.66 0.28 -50.85 16 25 Si 0.99 43.79 29.55 68.60 2.03 45.82 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 2.15 6.00 -2.39 -0.01 2.13 16 31 H 0.09 1.55 8.05 -2.39 -0.02 1.53 16 32 H 0.18 3.09 8.06 -2.91 -0.02 3.07 16 33 H 0.19 2.89 8.06 -2.91 -0.02 2.86 16 34 H 0.16 2.86 6.58 -2.91 -0.02 2.84 16 35 H 0.41 8.30 6.75 -92.71 -0.63 7.68 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.04 0.94 8.01 -2.39 -0.02 0.92 16 38 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.11 1.48 7.99 -2.39 -0.02 1.46 16 40 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 41 H 0.03 0.67 8.13 -2.39 -0.02 0.65 16 42 H 0.05 2.00 5.91 -2.39 -0.01 1.98 16 43 H 0.09 1.87 8.02 -2.38 -0.02 1.85 16 44 H 0.07 2.03 8.11 -2.39 -0.02 2.01 16 45 H 0.09 3.10 6.19 -2.38 -0.01 3.08 16 46 H 0.39 20.01 7.90 -92.71 -0.73 19.28 16 47 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -74.35 386.88 0.09 -74.26 By element: Atomic # 1 Polarization: 43.62 SS G_CDS: -0.35 Total: 43.28 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 7.88 Total: 22.32 kcal Atomic # 7 Polarization: -124.51 SS G_CDS: -9.39 Total: -133.89 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -0.09 Total: -51.78 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -74.35 0.09 -74.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699446293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.595 kcal (2) G-P(sol) polarization free energy of solvation -74.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds