Wall clock time and date at job start Tue Mar 31 2020 19:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38175 * 120.49476 * 2 1 4 4 N 1.31804 * 120.88902 * 179.97438 * 3 2 1 5 5 C 1.31822 * 122.05118 * 0.02562 * 4 3 2 6 6 C 1.38124 * 120.89823 * 0.02562 * 5 4 3 7 7 C 1.39794 * 120.50405 * 180.02562 * 2 1 3 8 8 C 1.48155 * 120.91786 * 0.03489 * 7 2 1 9 9 O 1.21513 * 120.00109 * 355.51844 * 8 7 2 10 10 N 1.34776 * 119.99544 * 175.52151 * 8 7 2 11 11 C 1.46501 * 119.99885 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47018 * 327.90037 * 11 10 8 13 13 C 1.53005 * 109.47531 * 87.90141 * 11 10 8 14 14 C 1.52993 * 109.47145 * 207.90303 * 11 10 8 15 15 N 1.46904 * 109.47279 * 57.82707 * 14 11 10 16 16 C 1.46900 * 111.00175 * 199.87079 * 15 14 11 17 17 C 1.46892 * 111.00311 * 75.91321 * 15 14 11 18 18 C 1.50698 * 109.47333 * 190.00280 * 17 15 14 19 19 O 1.21294 * 119.99748 * 359.97438 * 18 17 15 20 20 N 1.34778 * 120.00071 * 179.97438 * 18 17 15 21 21 C 1.37098 * 119.99891 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00148 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99969 * 179.97438 * 21 20 18 24 24 N 1.31417 * 119.99756 * 180.02562 * 23 21 20 25 25 Si 1.86792 * 119.99989 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47300 * 89.99412 * 25 23 21 27 27 H 1.48493 * 109.47240 * 209.99688 * 25 23 21 28 28 H 1.48499 * 109.47098 * 329.99579 * 25 23 21 29 29 H 1.09008 * 109.46507 * 262.81492 * 1 2 3 30 30 H 1.08997 * 109.47206 * 22.81084 * 1 2 3 31 31 H 1.08996 * 109.47104 * 142.81682 * 1 2 3 32 32 H 1.07997 * 119.55475 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.54871 * 180.02562 * 5 4 3 34 34 H 1.08005 * 120.49725 * 179.97438 * 6 5 4 35 35 H 0.97001 * 120.00052 * 359.97438 * 10 8 7 36 36 H 1.08996 * 109.47193 * 180.02562 * 13 11 10 37 37 H 1.09002 * 109.46710 * 300.00101 * 13 11 10 38 38 H 1.09001 * 109.47054 * 59.99919 * 13 11 10 39 39 H 1.08998 * 109.47311 * 177.82316 * 14 11 10 40 40 H 1.09001 * 109.47222 * 297.82146 * 14 11 10 41 41 H 1.09004 * 109.47279 * 65.04855 * 16 15 14 42 42 H 1.08992 * 109.47240 * 185.05075 * 16 15 14 43 43 H 1.09001 * 109.46922 * 305.05288 * 16 15 14 44 44 H 1.09002 * 109.46751 * 310.00146 * 17 15 14 45 45 H 1.09000 * 109.47396 * 70.00205 * 17 15 14 46 46 H 0.97001 * 120.00066 * 0.02562 * 20 18 17 47 47 H 0.96992 * 119.99627 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5262 1.1997 0.0005 5 6 4.2334 0.0872 0.0005 6 6 3.6138 -1.1472 -0.0005 7 6 2.2166 -1.2045 -0.0005 8 6 1.5079 -2.5055 -0.0019 9 8 0.2959 -2.5373 0.0797 10 7 2.2076 -3.6538 -0.0935 11 6 1.5068 -4.9403 -0.0955 12 1 0.6077 -4.8652 0.5162 13 6 1.1190 -5.3078 -1.5292 14 6 2.4246 -6.0218 0.4777 15 7 2.8388 -5.6436 1.8355 16 6 4.0501 -6.3705 2.2382 17 6 1.7502 -5.8606 2.7976 18 6 2.1179 -5.2397 4.1206 19 8 3.1823 -4.6725 4.2494 20 7 1.2639 -5.3145 5.1606 21 6 1.5986 -4.7500 6.3644 22 1 2.5464 -4.2450 6.4791 23 6 0.7180 -4.8267 7.4365 24 7 1.0387 -4.2852 8.5902 25 14 -0.9215 -5.6995 7.2379 26 1 -0.7637 -7.1346 7.5855 27 1 -1.9249 -5.0792 8.1397 28 1 -1.3793 -5.5786 5.8304 29 1 -0.3633 -0.1285 1.0197 30 1 -0.3633 0.9473 -0.3984 31 1 -0.3633 -0.8187 -0.6211 32 1 1.6690 2.1264 0.0004 33 1 5.3121 0.1418 0.0014 34 1 4.1996 -2.0546 -0.0009 35 1 3.1750 -3.6284 -0.1590 36 1 0.5972 -6.2648 -1.5305 37 1 0.4650 -4.5373 -1.9375 38 1 2.0181 -5.3829 -2.1409 39 1 1.8902 -6.9712 0.5122 40 1 3.3058 -6.1238 -0.1558 41 1 4.8830 -6.0688 1.6031 42 1 4.2836 -6.1399 3.2775 43 1 3.8825 -7.4424 2.1326 44 1 0.8362 -5.4007 2.4219 45 1 1.5906 -6.9306 2.9304 46 1 0.4129 -5.7684 5.0577 47 1 0.4241 -4.3391 9.3386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699446294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:37 Heat of formation + Delta-G solvation = -20.163553 kcal Electronic energy + Delta-G solvation = -29273.842812 eV Core-core repulsion = 25264.233383 eV Total energy + Delta-G solvation = -4009.609429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.83618 -39.41021 -38.68277 -37.07269 -34.99177 -33.86017 -33.45206 -32.64973 -31.67393 -30.68243 -28.28938 -27.44103 -27.06440 -24.89341 -24.60584 -22.86295 -22.21355 -21.14609 -20.59767 -19.34022 -18.28651 -18.18819 -16.90219 -16.27599 -15.92879 -15.59481 -15.37929 -15.32670 -15.06188 -14.98385 -14.40436 -14.18594 -14.02337 -13.74101 -13.57392 -13.49998 -13.21234 -13.00075 -12.78881 -12.64567 -12.48294 -12.30729 -12.20823 -12.02680 -11.85204 -11.67574 -11.59739 -11.33958 -11.14472 -10.77985 -10.59020 -10.22190 -9.97543 -9.92348 -9.53383 -9.39358 -9.14534 -8.98808 -8.58574 -8.18399 -8.04045 -6.30976 -3.82202 0.63793 0.95396 2.86663 3.03691 3.04000 3.06883 3.15498 3.72824 3.73359 3.84881 4.10755 4.27674 4.47040 4.53869 4.63392 4.71045 4.82729 4.85404 4.99660 5.10803 5.21107 5.24221 5.27482 5.39858 5.47441 5.50393 5.51992 5.56236 5.59536 5.70153 5.73559 5.78200 5.82333 5.84188 5.94013 5.97790 5.99442 6.26067 6.38469 6.46554 6.51187 7.07445 7.20121 7.45495 7.58314 7.77234 8.14359 8.16120 8.60130 8.95228 9.42633 9.83148 10.82160 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009665 B = 0.003588 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.247155 B = 7801.322144 C = 8900.810325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.077 4.077 3 C 0.090 3.910 4 N -0.468 5.468 5 C 0.085 3.915 6 C -0.130 4.130 7 C -0.090 4.090 8 C 0.562 3.438 9 O -0.530 6.530 10 N -0.697 5.697 11 C 0.145 3.855 12 H 0.091 0.909 13 C -0.161 4.161 14 C 0.042 3.958 15 N -0.516 5.516 16 C 0.023 3.977 17 C 0.040 3.960 18 C 0.454 3.546 19 O -0.559 6.559 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.878 3.122 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.140 0.860 35 H 0.401 0.599 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.015 0.985 44 H 0.088 0.912 45 H 0.049 0.951 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.040 -0.157 -22.717 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.080 4.080 3 C -0.068 4.068 4 N -0.176 5.176 5 C -0.072 4.072 6 C -0.151 4.151 7 C -0.101 4.101 8 C 0.349 3.651 9 O -0.408 6.408 10 N -0.348 5.348 11 C 0.040 3.960 12 H 0.109 0.891 13 C -0.220 4.220 14 C -0.087 4.087 15 N -0.239 5.239 16 C -0.125 4.125 17 C -0.091 4.091 18 C 0.239 3.761 19 O -0.441 6.441 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.704 3.296 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.177 0.823 33 H 0.178 0.822 34 H 0.157 0.843 35 H 0.237 0.763 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.033 0.967 44 H 0.106 0.894 45 H 0.067 0.933 46 H 0.202 0.798 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.404 1.509 -22.327 22.422 hybrid contribution -1.429 -2.372 0.182 2.775 sum -0.025 -0.863 -22.145 22.162 Atomic orbital electron populations 1.20984 0.89086 1.03072 1.04164 1.21124 0.98435 0.92508 0.95924 1.22719 0.89780 0.97360 0.96900 1.67523 1.08327 1.31877 1.09899 1.22691 1.00543 0.87262 0.96661 1.22347 0.93916 1.00237 0.98563 1.20235 0.93798 0.93923 1.02179 1.18076 0.86959 0.83628 0.76445 1.90719 1.13396 1.87074 1.49585 1.45629 1.10573 1.04956 1.73601 1.21007 0.96235 0.82315 0.96431 0.89057 1.22153 1.01765 1.02055 0.96024 1.22498 0.99136 0.95980 0.91037 1.61530 1.04611 1.57744 1.00062 1.22537 0.91438 0.93969 1.04525 1.21953 0.95011 0.98967 0.93176 1.19590 0.86228 0.85617 0.84645 1.90522 1.23998 1.46308 1.83311 1.42217 1.17666 1.51777 1.11337 1.19412 1.06078 1.32635 0.85136 0.86310 1.25028 0.98235 0.97617 0.95199 1.69621 1.36947 1.43841 1.01712 0.86691 0.84049 0.80362 0.78458 1.19655 1.20116 1.19450 0.90161 0.92048 0.88684 0.82255 0.82217 0.84258 0.76322 0.91508 0.91863 0.92380 0.93083 0.90199 0.91998 0.88586 0.96667 0.89413 0.93303 0.79770 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 8.83 36.01 0.32 -1.03 16 2 C -0.08 -0.96 5.93 -104.06 -0.62 -1.58 16 3 C 0.09 1.05 10.83 -17.59 -0.19 0.86 16 4 N -0.47 -5.85 10.33 -13.30 -0.14 -5.98 16 5 C 0.08 0.93 11.17 -17.60 -0.20 0.73 16 6 C -0.13 -1.42 9.61 -39.03 -0.37 -1.80 16 7 C -0.09 -1.17 5.91 -104.65 -0.62 -1.79 16 8 C 0.56 7.79 7.74 -12.19 -0.09 7.70 16 9 O -0.53 -8.59 13.13 5.35 0.07 -8.52 16 10 N -0.70 -7.99 4.79 -54.65 -0.26 -8.25 16 11 C 0.15 1.56 2.66 -67.93 -0.18 1.38 16 12 H 0.09 1.21 6.21 -51.93 -0.32 0.88 16 13 C -0.16 -1.35 9.51 37.16 0.35 -1.00 16 14 C 0.04 0.43 4.55 -3.83 -0.02 0.41 16 15 N -0.52 -7.39 4.22 -244.38 -1.03 -8.42 16 16 C 0.02 0.32 9.15 60.06 0.55 0.87 16 17 C 0.04 0.67 5.27 -4.98 -0.03 0.64 16 18 C 0.45 10.24 7.42 -10.99 -0.08 10.15 16 19 O -0.56 -14.60 13.96 5.55 0.08 -14.52 16 20 N -0.59 -14.21 5.09 -10.96 -0.06 -14.27 16 21 C -0.30 -8.65 10.16 -14.93 -0.15 -8.81 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.17 5.50 -17.46 -0.10 1.07 16 24 N -0.88 -25.95 13.96 55.50 0.77 -25.18 16 25 Si 0.88 19.66 27.74 -169.99 -4.71 14.95 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.27 -5.56 6.52 56.52 0.37 -5.19 16 29 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 30 H 0.06 0.54 8.05 -51.93 -0.42 0.12 16 31 H 0.09 1.21 5.96 -51.93 -0.31 0.90 16 32 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.14 1.18 6.56 -52.48 -0.34 0.84 16 35 H 0.40 3.90 6.79 -40.82 -0.28 3.63 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.05 0.47 8.00 -51.93 -0.42 0.05 16 40 H 0.08 0.66 7.94 -51.93 -0.41 0.25 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.10 1.74 5.79 -51.93 -0.30 1.44 16 43 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 44 H 0.09 1.38 6.67 -51.93 -0.35 1.03 16 45 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 46 H 0.37 7.91 5.76 -40.82 -0.24 7.67 16 47 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -35.00 384.70 -7.65 -42.65 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -6.74 Total: 13.95 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -1.42 Total: 7.82 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.71 Total: -62.11 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.15 Total: -23.05 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.71 Total: 14.95 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.00 -7.65 -42.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699446294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.485 kcal (2) G-P(sol) polarization free energy of solvation -35.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds