Wall clock time and date at job start Tue Mar 31 2020 19:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38175 * 120.49476 * 2 1 4 4 N 1.31804 * 120.88902 * 179.97438 * 3 2 1 5 5 C 1.31822 * 122.05118 * 0.02562 * 4 3 2 6 6 C 1.38124 * 120.89823 * 0.02562 * 5 4 3 7 7 C 1.39794 * 120.50405 * 180.02562 * 2 1 3 8 8 C 1.48155 * 120.91786 * 0.03489 * 7 2 1 9 9 O 1.21513 * 120.00109 * 355.51844 * 8 7 2 10 10 N 1.34776 * 119.99544 * 175.52151 * 8 7 2 11 11 C 1.46501 * 119.99885 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47018 * 327.90037 * 11 10 8 13 13 C 1.53005 * 109.47531 * 87.90141 * 11 10 8 14 14 C 1.52993 * 109.47145 * 207.90303 * 11 10 8 15 15 N 1.46904 * 109.47279 * 57.82707 * 14 11 10 16 16 C 1.46900 * 111.00175 * 199.87079 * 15 14 11 17 17 C 1.46892 * 111.00311 * 75.91321 * 15 14 11 18 18 C 1.50698 * 109.47333 * 190.00280 * 17 15 14 19 19 O 1.21294 * 119.99748 * 359.97438 * 18 17 15 20 20 N 1.34778 * 120.00071 * 179.97438 * 18 17 15 21 21 C 1.37098 * 119.99891 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00148 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99969 * 179.97438 * 21 20 18 24 24 N 1.31417 * 119.99756 * 180.02562 * 23 21 20 25 25 Si 1.86792 * 119.99989 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47300 * 89.99412 * 25 23 21 27 27 H 1.48493 * 109.47240 * 209.99688 * 25 23 21 28 28 H 1.48499 * 109.47098 * 329.99579 * 25 23 21 29 29 H 1.09008 * 109.46507 * 262.81492 * 1 2 3 30 30 H 1.08997 * 109.47206 * 22.81084 * 1 2 3 31 31 H 1.08996 * 109.47104 * 142.81682 * 1 2 3 32 32 H 1.07997 * 119.55475 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.54871 * 180.02562 * 5 4 3 34 34 H 1.08005 * 120.49725 * 179.97438 * 6 5 4 35 35 H 0.97001 * 120.00052 * 359.97438 * 10 8 7 36 36 H 1.08996 * 109.47193 * 180.02562 * 13 11 10 37 37 H 1.09002 * 109.46710 * 300.00101 * 13 11 10 38 38 H 1.09001 * 109.47054 * 59.99919 * 13 11 10 39 39 H 1.08998 * 109.47311 * 177.82316 * 14 11 10 40 40 H 1.09001 * 109.47222 * 297.82146 * 14 11 10 41 41 H 1.09004 * 109.47279 * 65.04855 * 16 15 14 42 42 H 1.08992 * 109.47240 * 185.05075 * 16 15 14 43 43 H 1.09001 * 109.46922 * 305.05288 * 16 15 14 44 44 H 1.09002 * 109.46751 * 310.00146 * 17 15 14 45 45 H 1.09000 * 109.47396 * 70.00205 * 17 15 14 46 46 H 0.97001 * 120.00066 * 0.02562 * 20 18 17 47 47 H 0.96992 * 119.99627 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5262 1.1997 0.0005 5 6 4.2334 0.0872 0.0005 6 6 3.6138 -1.1472 -0.0005 7 6 2.2166 -1.2045 -0.0005 8 6 1.5079 -2.5055 -0.0019 9 8 0.2959 -2.5373 0.0797 10 7 2.2076 -3.6538 -0.0935 11 6 1.5068 -4.9403 -0.0955 12 1 0.6077 -4.8652 0.5162 13 6 1.1190 -5.3078 -1.5292 14 6 2.4246 -6.0218 0.4777 15 7 2.8388 -5.6436 1.8355 16 6 4.0501 -6.3705 2.2382 17 6 1.7502 -5.8606 2.7976 18 6 2.1179 -5.2397 4.1206 19 8 3.1823 -4.6725 4.2494 20 7 1.2639 -5.3145 5.1606 21 6 1.5986 -4.7500 6.3644 22 1 2.5464 -4.2450 6.4791 23 6 0.7180 -4.8267 7.4365 24 7 1.0387 -4.2852 8.5902 25 14 -0.9215 -5.6995 7.2379 26 1 -0.7637 -7.1346 7.5855 27 1 -1.9249 -5.0792 8.1397 28 1 -1.3793 -5.5786 5.8304 29 1 -0.3633 -0.1285 1.0197 30 1 -0.3633 0.9473 -0.3984 31 1 -0.3633 -0.8187 -0.6211 32 1 1.6690 2.1264 0.0004 33 1 5.3121 0.1418 0.0014 34 1 4.1996 -2.0546 -0.0009 35 1 3.1750 -3.6284 -0.1590 36 1 0.5972 -6.2648 -1.5305 37 1 0.4650 -4.5373 -1.9375 38 1 2.0181 -5.3829 -2.1409 39 1 1.8902 -6.9712 0.5122 40 1 3.3058 -6.1238 -0.1558 41 1 4.8830 -6.0688 1.6031 42 1 4.2836 -6.1399 3.2775 43 1 3.8825 -7.4424 2.1326 44 1 0.8362 -5.4007 2.4219 45 1 1.5906 -6.9306 2.9304 46 1 0.4129 -5.7684 5.0577 47 1 0.4241 -4.3391 9.3386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699446294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:36 Heat of formation + Delta-G solvation = -47.824633 kcal Electronic energy + Delta-G solvation = -29275.042286 eV Core-core repulsion = 25264.233383 eV Total energy + Delta-G solvation = -4010.808904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.77024 -40.63562 -40.07286 -38.31117 -36.24833 -35.67388 -34.38981 -33.76540 -33.54613 -31.55829 -29.74290 -28.33298 -27.95523 -26.50281 -25.78741 -23.86195 -23.24671 -22.11607 -21.62492 -21.17750 -20.16745 -19.11684 -17.87209 -17.85146 -16.99443 -16.71174 -16.69079 -16.47897 -16.21324 -16.12886 -15.71682 -15.43918 -15.20723 -14.97565 -14.84599 -14.63586 -14.36857 -14.32258 -14.13738 -13.70457 -13.59246 -13.50912 -13.27278 -13.07629 -12.91282 -12.81294 -12.66527 -12.51878 -12.48664 -12.38490 -12.01712 -11.71836 -11.46444 -11.21680 -10.87975 -10.38347 -10.33221 -10.24111 -10.05277 -9.89210 -9.19721 -8.43322 -6.03327 -0.30698 0.07866 1.27346 1.31537 1.40547 1.87193 1.94810 2.12634 2.20038 2.63183 2.82040 3.13151 3.19874 3.47444 3.59676 3.75219 3.83376 3.85098 3.98234 4.04812 4.18460 4.31834 4.32744 4.41620 4.47224 4.56893 4.62520 4.67189 4.70913 4.73760 4.76648 4.80463 4.83693 4.85073 5.05060 5.09758 5.23047 5.31388 5.35943 5.50781 5.56971 5.63371 5.88363 6.00513 6.20711 6.52689 6.58079 6.87093 6.89052 7.19312 7.38537 7.95611 8.74428 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009665 B = 0.003588 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.247155 B = 7801.322144 C = 8900.810325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.094 4.094 3 C 0.086 3.914 4 N -0.487 5.487 5 C 0.080 3.920 6 C -0.129 4.129 7 C -0.112 4.112 8 C 0.554 3.446 9 O -0.562 6.562 10 N -0.688 5.688 11 C 0.142 3.858 12 H 0.065 0.935 13 C -0.151 4.151 14 C 0.049 3.951 15 N -0.535 5.535 16 C 0.028 3.972 17 C 0.054 3.946 18 C 0.452 3.548 19 O -0.600 6.600 20 N -0.596 5.596 21 C -0.325 4.325 22 H 0.056 0.944 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.961 3.039 26 H -0.253 1.253 27 H -0.275 1.275 28 H -0.238 1.238 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.183 0.817 33 H 0.189 0.811 34 H 0.163 0.837 35 H 0.410 0.590 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.047 0.953 43 H 0.038 0.962 44 H 0.100 0.900 45 H 0.080 0.920 46 H 0.387 0.613 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 -2.293 -25.468 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.097 4.097 3 C -0.071 4.071 4 N -0.196 5.196 5 C -0.076 4.076 6 C -0.149 4.149 7 C -0.123 4.123 8 C 0.341 3.659 9 O -0.443 6.443 10 N -0.339 5.339 11 C 0.038 3.962 12 H 0.083 0.917 13 C -0.210 4.210 14 C -0.079 4.079 15 N -0.259 5.259 16 C -0.119 4.119 17 C -0.078 4.078 18 C 0.240 3.760 19 O -0.484 6.484 20 N -0.238 5.238 21 C -0.454 4.454 22 H 0.074 0.926 23 C -0.212 4.212 24 N -0.575 5.575 25 Si 0.781 3.219 26 H -0.177 1.177 27 H -0.200 1.200 28 H -0.161 1.161 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.200 0.800 33 H 0.206 0.794 34 H 0.180 0.820 35 H 0.247 0.753 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.118 0.882 45 H 0.098 0.902 46 H 0.222 0.778 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.566 -0.653 -25.120 25.135 hybrid contribution -0.971 -1.652 1.000 2.161 sum -0.405 -2.305 -24.120 24.233 Atomic orbital electron populations 1.20886 0.88861 1.03969 1.02855 1.21324 0.98856 0.92943 0.96600 1.23082 0.89789 0.97998 0.96249 1.67582 1.08749 1.32711 1.10548 1.23215 1.01904 0.86881 0.95602 1.22605 0.93263 1.01351 0.97690 1.20434 0.94869 0.93824 1.03172 1.18320 0.86772 0.84524 0.76255 1.90697 1.14682 1.87585 1.51318 1.45648 1.11026 1.04779 1.72416 1.21116 0.95391 0.82082 0.97655 0.91683 1.22061 1.02410 1.02225 0.94280 1.22582 1.00435 0.96325 0.88536 1.61447 1.04084 1.58955 1.01432 1.22410 0.92141 0.95329 1.02037 1.21818 0.96055 1.00051 0.89854 1.20876 0.84989 0.83898 0.86256 1.90508 1.25811 1.47633 1.84435 1.42086 1.18869 1.52438 1.10385 1.18984 1.04593 1.33957 0.87908 0.92569 1.26055 1.03072 0.98061 0.94026 1.69799 1.39114 1.45594 1.02996 0.85422 0.77102 0.79253 0.80139 1.17746 1.19988 1.16135 0.91970 0.89351 0.90106 0.79990 0.79430 0.81959 0.75279 0.89709 0.93698 0.90488 0.90781 0.87340 0.89759 0.93418 0.94387 0.88224 0.90177 0.77827 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.58 8.83 71.24 0.63 -1.95 16 2 C -0.09 -2.37 5.93 -19.50 -0.12 -2.49 16 3 C 0.09 1.96 10.83 84.68 0.92 2.87 16 4 N -0.49 -11.78 10.33 -196.01 -2.03 -13.81 16 5 C 0.08 1.65 11.17 84.67 0.95 2.60 16 6 C -0.13 -2.69 9.61 22.63 0.22 -2.47 16 7 C -0.11 -2.89 5.91 -19.88 -0.12 -3.01 16 8 C 0.55 15.32 7.74 86.88 0.67 15.99 16 9 O -0.56 -18.64 13.13 -3.76 -0.05 -18.69 16 10 N -0.69 -14.72 4.79 -445.12 -2.13 -16.86 16 11 C 0.14 2.70 2.66 44.99 0.12 2.82 16 12 H 0.06 1.61 6.21 -2.39 -0.01 1.60 16 13 C -0.15 -2.08 9.51 71.98 0.68 -1.40 16 14 C 0.05 0.79 4.55 86.30 0.39 1.18 16 15 N -0.53 -13.94 4.22 -927.08 -3.91 -17.85 16 16 C 0.03 0.73 9.15 127.69 1.17 1.90 16 17 C 0.05 1.64 5.27 85.56 0.45 2.10 16 18 C 0.45 20.55 7.42 87.66 0.65 21.20 16 19 O -0.60 -32.60 13.96 -3.07 -0.04 -32.64 16 20 N -0.60 -28.86 5.09 -306.98 -1.56 -30.42 16 21 C -0.33 -19.38 10.16 84.04 0.85 -18.53 16 22 H 0.06 3.97 7.39 -2.91 -0.02 3.94 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 24 N -0.93 -57.20 13.96 21.67 0.30 -56.89 16 25 Si 0.96 40.00 27.74 68.60 1.90 41.90 16 26 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 28 H -0.24 -8.61 6.52 99.48 0.65 -7.96 16 29 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.09 1.52 8.05 -2.39 -0.02 1.50 16 31 H 0.08 2.15 5.96 -2.39 -0.01 2.14 16 32 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 33 H 0.19 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.16 2.45 6.56 -2.91 -0.02 2.43 16 35 H 0.41 7.07 6.79 -92.71 -0.63 6.44 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.95 8.00 -2.39 -0.02 0.93 16 40 H 0.11 1.21 7.94 -2.39 -0.02 1.19 16 41 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.05 1.72 5.79 -2.39 -0.01 1.70 16 43 H 0.04 0.80 8.13 -2.39 -0.02 0.78 16 44 H 0.10 2.89 6.67 -2.39 -0.02 2.88 16 45 H 0.08 2.01 8.12 -2.39 -0.02 1.99 16 46 H 0.39 15.84 5.76 -92.71 -0.53 15.30 16 47 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -83.62 384.70 0.21 -83.41 By element: Atomic # 1 Polarization: 41.54 SS G_CDS: -0.21 Total: 41.33 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 7.94 Total: 20.52 kcal Atomic # 7 Polarization: -126.50 SS G_CDS: -9.33 Total: -135.83 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -0.09 Total: -51.33 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 1.90 Total: 41.90 kcal Total: -83.62 0.21 -83.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699446294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.583 kcal (2) G-P(sol) polarization free energy of solvation -83.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds